Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genomic insights into the origins and evolution of symbiotic genes in the Phaseolus vulgaris microsymbionts
Submitted (08-JAN-2019) College of Life Sciences, Northwest A&F University, No.3 Taicheng Road, Yangling, Shaanxi 712100, China
Submitted (13-SEP-2017) College of Life Sciences, Northwest A&F University, No. 3 Taicheng Road, Yangling, Shaanxi 712100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP035000.1.\nBacteria and source DNA available from State Key Laboratory of Crop\nStress Biology in Arid Areas, College of Life Sciences, Northwest\nA&F University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 170.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 06:06:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,223\nCDSs (total) :: 7,160\nGenes (coding) :: 6,810\nCDSs (with protein) :: 6,810\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 350\nCDSs (without protein) :: 350\nPseudo Genes (ambiguous residues) :: 0 of 350\nPseudo Genes (frameshifted) :: 234 of 350\nPseudo Genes (incomplete) :: 203 of 350\nPseudo Genes (internal stop) :: 49 of 350\nPseudo Genes (multiple problems) :: 118 of 350\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007695872.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012738.2
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007767190.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024921.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014763791.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF020039.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF014766.2
COORDINATES: protein motif:HMM:NF024771.2
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019964952.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007821817.1
heme-degrading domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003562638.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013431.2
COORDINATES: similar to AA sequence:RefSeq:WP_007635103.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003581339.1
COORDINATES: similar to AA sequence:RefSeq:WP_008121471.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_010972361.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018099659.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007533465.1
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654719.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427422.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827581.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595218.1
nucleotidyltransferase and HEPN domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011053391.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_007636139.1
COORDINATES: protein motif:HMM:NF018152.2
COORDINATES: similar to AA sequence:RefSeq:WP_007753860.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594540.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559843.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594536.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016555397.1
COORDINATES: similar to AA sequence:RefSeq:WP_018116061.1
COORDINATES: similar to AA sequence:RefSeq:WP_018116060.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007538546.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023693.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020046822.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518418.1
DUF3991 and toprim domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018445321.1
COORDINATES: similar to AA sequence:RefSeq:WP_011652016.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_017964330.1
COORDINATES: similar to AA sequence:RefSeq:WP_020049969.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017956657.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634298.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493945.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556303.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
glutathionylspermidine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017956563.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576197.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556301.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572108.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591540.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956566.1
COORDINATES: similar to AA sequence:RefSeq:WP_011426223.1
COORDINATES: similar to AA sequence:RefSeq:WP_011426224.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343186.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313953.1
COORDINATES: similar to AA sequence:RefSeq:WP_011426227.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343184.1
COORDINATES: similar to AA sequence:RefSeq:WP_015343183.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313958.1
GO:0004371 - glycerone kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018480586.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012556295.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018444825.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245715.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003508204.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_018444831.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480592.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018493366.1
GO:0005509 - calcium ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018516614.1
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591511.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011428481.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003591507.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550204.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996250.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480599.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444840.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010023905.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018493361.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_003550198.1
GO:0042400 - ectoine catabolic process [Evidence IEA]
N(2)-acetyl-L-2,4-diaminobutanoate deacetylase DoeB
COORDINATES: similar to AA sequence:RefSeq:WP_010975302.1
DoeA (degradation of ectoine A) is also called EutD (ectoine utilization D); Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012755556.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556279.1
hydroxyectoine utilization dehydratase EutB
COORDINATES: similar to AA sequence:RefSeq:WP_003591485.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556277.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
GO:0051470 - ectoine transport [Evidence IEA]; GO:0033308 - hydroxyectoine transport [Evidence IEA]
ectoine/hydroxyectoine ABC transporter permease subunit EhuD
COORDINATES: similar to AA sequence:RefSeq:WP_018444849.1
ectoine/hydroxyectoine ABC transporter permease subunit EhuC
COORDINATES: similar to AA sequence:RefSeq:WP_018480609.1
GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]; GO:0033294 - ectoine binding [Evidence IEA]; GO:0033295 - hydroxyectoine binding [Evidence IEA]
ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB
COORDINATES: similar to AA sequence:RefSeq:WP_017996258.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA
COORDINATES: similar to AA sequence:RefSeq:WP_004673711.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012556267.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018444854.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012556265.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003591448.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591446.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991309.1
COORDINATES: similar to AA sequence:RefSeq:WP_018243242.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991311.1
COORDINATES: similar to AA sequence:RefSeq:WP_018116605.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489921.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532531.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020047081.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003591434.1
COORDINATES: similar to AA sequence:RefSeq:WP_011648829.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591430.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003562554.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017991317.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576127.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550160.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591421.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635044.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012755535.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755534.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956607.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572553.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017991323.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480631.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956612.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761245.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_014989244.1
COORDINATES: protein motif:HMM:NF024685.2
COORDINATES: similar to AA sequence:RefSeq:WP_003531900.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591400.1
GO:0006817 - phosphate ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003550141.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047105.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562595.1
COORDINATES: similar to AA sequence:RefSeq:WP_011648807.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444880.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480645.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003569395.1
COORDINATES: similar to AA sequence:RefSeq:WP_011651102.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489922.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480647.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767651.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493340.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047113.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572614.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012556240.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493326.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047117.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018073089.1
COORDINATES: similar to AA sequence:RefSeq:WP_018073088.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591368.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_008532505.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016657 - oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047122.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0052873 - FMN reductase (NADPH) activity [Evidence IEA]; GO:0008752 - FMN reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010973629.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576053.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556235.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562630.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493320.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003550107.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489934.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428545.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003550102.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649524.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480673.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591351.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572678.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591349.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556225.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572683.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591346.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572688.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003550085.1
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003591345.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444711.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591343.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245863.1
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591341.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012554517.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550007.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482467.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576007.1
lysylphosphatidylglycerol synthase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020047171.1
GO:0003824 - catalytic activity [Evidence IEA]
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011649489.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635198.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649487.1
amino acid ABC transporter permease/ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020047175.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489953.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575993.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572701.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755476.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591320.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549974.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649009.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572706.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575980.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245656.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591311.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516766.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480299.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493595.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444772.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649019.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480302.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591299.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591298.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572720.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591295.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003575966.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_017967436.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003591288.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003575962.1
COORDINATES: similar to AA sequence:RefSeq:WP_018073026.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003575960.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428574.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428575.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245891.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649465.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007762854.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572736.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591274.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004676082.1
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012653906.1
GO:0003844 - 1,4-alpha-glucan branching enzyme activity [Evidence IEA]; GO:0043169 - cation binding [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]; GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017991416.1
GO:0047471 - maltose alpha-D-glucosyltransferase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591267.1
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003591265.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575934.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339728.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012556192.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956709.1
GO:0016310 - phosphorylation [Evidence IEA]
aminoglycoside phosphotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017991420.1
magnesium and cobalt transport protein CorA
COORDINATES: protein motif:HMM:NF020265.2
COORDINATES: similar to AA sequence:RefSeq:WP_003591254.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493292.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556187.1
NCS1 family nucleobase:cation symporter-1
COORDINATES: similar to AA sequence:RefSeq:WP_018482431.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996341.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996342.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018073004.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047212.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575914.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556183.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018493283.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635340.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549923.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677420.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755440.1
COORDINATES: similar to AA sequence:RefSeq:WP_018445027.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245914.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956725.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991440.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635371.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549890.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047226.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591203.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549885.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649432.1
GO:0004560 - alpha-L-fucosidase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003572789.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677395.1
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012755426.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003572796.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490006.1
COORDINATES: similar to AA sequence:RefSeq:WP_018897937.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996363.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017991452.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003549868.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591178.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493267.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591174.1
COORDINATES: similar to AA sequence:RefSeq:WP_003506013.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996370.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591170.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649414.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591168.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991460.1
COORDINATES: similar to AA sequence:RefSeq:WP_006015924.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591166.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018072964.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591162.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575842.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572833.1
COORDINATES: similar to AA sequence:RefSeq:WP_017991464.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591156.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493255.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556150.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003591152.1
COORDINATES: similar to AA sequence:RefSeq:WP_018072951.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549825.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012556146.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556145.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556144.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245970.1
COORDINATES: similar to AA sequence:RefSeq:WP_003500453.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635451.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678960.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007799690.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004678967.1
hydroxypyruvate isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018482358.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018493227.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490052.1
COORDINATES: similar to AA sequence:RefSeq:WP_017269930.1
COORDINATES: similar to AA sequence:RefSeq:WP_018072919.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635478.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649364.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956817.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591125.1
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0004657 - proline dehydrogenase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_018480226.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649313.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003551065.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003591109.1
COORDINATES: similar to AA sequence:RefSeq:WP_018494251.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_003591105.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480242.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003575760.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047333.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551053.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649294.1
proline/glycine betaine ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_012556116.1
glycine betaine/L-proline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003591093.1
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008532179.1
COORDINATES: similar to AA sequence:RefSeq:WP_007606920.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428704.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071451.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956854.1
COORDINATES: similar to AA sequence:RefSeq:WP_003580396.1
COORDINATES: similar to AA sequence:RefSeq:WP_018448881.1
COORDINATES: similar to AA sequence:RefSeq:WP_012779117.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_003591085.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555691.1
COORDINATES: similar to AA sequence:RefSeq:WP_012556093.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047907.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_018855616.1
COORDINATES: similar to AA sequence:RefSeq:WP_007758851.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591031.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532618.1
COORDINATES: similar to AA sequence:RefSeq:WP_018329045.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018068081.1
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006699047.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611730.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003592402.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555866.1
GO:0051907 - S-(hydroxymethyl)glutathione synthase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018480244.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007826120.1
GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0051903 - S-(hydroxymethyl)glutathione dehydrogenase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]; GO:0009404 - toxin metabolic process [Evidence IEA]
S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_020047345.1
GO:0047869 - dimethylpropiothetin dethiomethylase activity [Evidence IEA]
dimethylsulfonioproprionate lyase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003551028.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017966359.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018446953.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428712.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649280.1
COORDINATES: similar to AA sequence:RefSeq:WP_018446956.1
pyrroline-5-carboxylate reductase dimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011649278.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800569.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755273.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592376.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047364.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967588.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956871.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047367.1
GO:0050269 - coniferyl-aldehyde dehydrogenase activity [Evidence IEA]
GO:0006081 - cellular aldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635614.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246052.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592361.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755262.1
COORDINATES: similar to AA sequence:RefSeq:WP_016732987.1
adenylate/guanylate cyclase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012555847.1
COORDINATES: similar to AA sequence:RefSeq:WP_010023496.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490509.1
COORDINATES: similar to AA sequence:RefSeq:WP_012558132.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015914896.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532075.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860356.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018483493.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047381.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575701.1
COORDINATES: similar to AA sequence:RefSeq:WP_007535490.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490352.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996022.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047386.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_012555837.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550970.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550967.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635648.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755247.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649247.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649244.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649243.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649242.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_011649241.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555829.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516960.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996029.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555820.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592276.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735945.1
COORDINATES: similar to AA sequence:RefSeq:WP_015271372.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672058.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555817.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592271.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003592269.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592268.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523955.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019565641.1
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003592265.1
COORDINATES: similar to AA sequence:RefSeq:WP_003545745.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490122.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_003568746.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555809.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555808.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592259.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490127.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237469.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_014989692.1
COORDINATES: similar to AA sequence:RefSeq:WP_010025109.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635734.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575613.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575612.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592246.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635742.1
COORDINATES: similar to AA sequence:RefSeq:WP_006467492.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575608.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996034.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047398.1
GO:0008718 - D-amino-acid dehydrogenase activity [Evidence IEA]; GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0055130 - D-alanine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003592239.1
GO:0008784 - alanine racemase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635752.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672081.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592761.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003592759.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003592738.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592755.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592753.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592237.1
COORDINATES: similar to AA sequence:RefSeq:WP_003568706.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012489655.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592232.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489653.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957287.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550380.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555793.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331408.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011649167.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735410.1
sialic acid TRAP transporter substrate-binding protein SiaP
COORDINATES: similar to AA sequence:RefSeq:WP_003575586.1
COORDINATES: similar to AA sequence:RefSeq:WP_018485768.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735393.1
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018485766.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575576.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_011652536.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071331.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649073.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550604.1
GO:0047770 - carboxylate reductase activity [Evidence IEA]
aldehyde oxidoreductase molybdenum-binding subunit PaoC
COORDINATES: similar to AA sequence:RefSeq:WP_017957401.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_020487072.1
GO:0047770 - carboxylate reductase activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
aldehyde dehydrogenase iron-sulfur subunit PaoA
COORDINATES: similar to AA sequence:RefSeq:WP_018071318.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444684.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_003550570.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735964.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550568.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550567.1
GO:0016746 - acyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017957383.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0009410 - response to xenobiotic stimulus [Evidence IEA]; GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635776.1
COORDINATES: similar to AA sequence:RefSeq:WP_012490158.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649094.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012649846.1
GO:0015891 - siderophore transport [Evidence IEA]
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012555775.1
Fe(3+)-hydroxamate ABC transporter permease FhuB
COORDINATES: similar to AA sequence:RefSeq:WP_012555774.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735974.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550556.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020047498.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592191.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516879.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555769.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047494.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755169.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550545.1
COORDINATES: similar to AA sequence:RefSeq:WP_003575549.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967731.1
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0071972 - peptidoglycan L,D-transpeptidase activity [Evidence IEA]
GO:0018104 - peptidoglycan-protein cross-linking [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011428776.1
GO:0042834 - peptidoglycan binding [Evidence IEA]; GO:0015288 - porin activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017996091.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010020762.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428780.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649703.1
COORDINATES: similar to AA sequence:RefSeq:WP_012093004.1
COORDINATES: similar to AA sequence:RefSeq:WP_008483960.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649544.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493494.1
GO:0004559 - alpha-mannosidase activity [Evidence IEA]
GO:0006013 - mannose metabolic process [Evidence IEA]
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011157606.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
Orn/Lys/Arg decarboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003576915.1
COORDINATES: similar to AA sequence:RefSeq:WP_008522856.1
COORDINATES: similar to AA sequence:RefSeq:WP_012758359.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071277.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576911.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550504.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571662.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245496.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562326.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755200.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592060.1
COORDINATES: similar to AA sequence:RefSeq:WP_008532785.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592058.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571675.1
COORDINATES: protein motif:HMM:NF024861.2
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: similar to AA sequence:RefSeq:WP_007635909.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555702.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592053.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576412.1
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018245488.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003550483.1
hydrogen peroxide-inducible genes activator
COORDINATES: similar to AA sequence:RefSeq:WP_041684052.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489611.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012555698.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555697.1
COORDINATES: similar to AA sequence:RefSeq:WP_011649141.1
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011649143.1
COORDINATES: similar to AA sequence:RefSeq:WP_018071256.1
COORDINATES: similar to AA sequence:RefSeq:WP_018493481.1
GO:0019346 - transsulfuration [Evidence IEA]
cystathionine gamma-synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003592040.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017990668.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592039.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555692.1
rRNA adenine N-6-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003592033.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047423.1
COORDINATES: similar to AA sequence:RefSeq:WP_020047422.1
COORDINATES: similar to AA sequence:RefSeq:WP_007788107.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562299.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957307.1
COORDINATES: similar to AA sequence:RefSeq:WP_003550416.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480458.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967773.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555682.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525781.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444585.1
COORDINATES: similar to AA sequence:RefSeq:WP_018245454.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957299.1
D-ribose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003562289.1
phosphogluconate dehydrogenase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012490383.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_012555677.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003550401.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555675.1
ribulose-bisphosphate carboxylase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003592012.1
COORDINATES: similar to AA sequence:RefSeq:WP_003562285.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735382.1
COORDINATES: similar to AA sequence:RefSeq:WP_003572061.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735384.1
COORDINATES: similar to AA sequence:RefSeq:WP_014763793.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671159.1
GH32 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003576367.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576364.1
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003576362.1
COORDINATES: similar to AA sequence:RefSeq:WP_007818956.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555660.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007637068.1
transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007637067.1
GO:0004866 - endopeptidase inhibitor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007637066.1
COORDINATES: similar to AA sequence:RefSeq:WP_012523124.1
GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014529321.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555658.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486155.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018247078.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591976.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247080.1
COORDINATES: similar to AA sequence:RefSeq:WP_018486159.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591965.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555652.1
COORDINATES: similar to AA sequence:RefSeq:WP_018444798.1
COORDINATES: similar to AA sequence:RefSeq:WP_017956528.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591958.1
COORDINATES: similar to AA sequence:RefSeq:WP_017967833.1
COORDINATES: similar to AA sequence:RefSeq:WP_018480529.1
autoinducer 2 ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003550856.1
COORDINATES: similar to AA sequence:RefSeq:WP_012759955.1
COORDINATES: similar to AA sequence:RefSeq:WP_018095578.1
COORDINATES: similar to AA sequence:RefSeq:WP_003568571.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591948.1
COORDINATES: similar to AA sequence:RefSeq:WP_012555638.1
COORDINATES: similar to AA sequence:RefSeq:WP_012483097.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611472.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012483096.1
COORDINATES: similar to AA sequence:RefSeq:WP_015339484.1
COORDINATES: similar to AA sequence:RefSeq:WP_017270940.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558795.1
COORDINATES: similar to AA sequence:RefSeq:WP_013760960.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558315.1
COORDINATES: similar to AA sequence:RefSeq:WP_004669254.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760201.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670133.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736152.1
GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016736151.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736150.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670144.1
COORDINATES: similar to AA sequence:RefSeq:WP_020011556.1
COORDINATES: similar to AA sequence:RefSeq:WP_020809379.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205810.1
COORDINATES: similar to AA sequence:RefSeq:WP_004670151.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_016736145.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736144.1
COORDINATES: similar to AA sequence:RefSeq:WP_018238813.1
COORDINATES: protein motif:HMM:NF017206.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611552.1
IS3-like element ISRle4 family transposase
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_020628979.1
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013223414.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914562.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
COORDINATES: protein motif:HMM:NF012402.2
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: protein motif:HMM:TIGR02246.1
COORDINATES: similar to AA sequence:RefSeq:WP_019883195.1
COORDINATES: similar to AA sequence:RefSeq:WP_003591631.1
COORDINATES: similar to AA sequence:RefSeq:WP_011428538.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973626.1
COORDINATES: similar to AA sequence:RefSeq:WP_018066243.1
COORDINATES: similar to AA sequence:RefSeq:WP_020040280.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578881.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578882.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578883.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578884.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578885.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578886.1
COORDINATES: protein motif:HMM:NF026221.2
GO:0004565 - beta-galactosidase activity [Evidence IEA]
beta-galactosidase trimerization domain-containing protein
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_010354465.1
COORDINATES: similar to AA sequence:RefSeq:WP_013772471.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578898.1
GO:0008679 - 2-hydroxy-3-oxopropionate reductase activity [Evidence IEA]
GO:0019580 - galactarate metabolic process [Evidence IEA]