Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
Genomic insights into the origins and evolution of symbiotic genes in the Phaseolus vulgaris microsymbionts
Submitted (08-JAN-2019) College of Life Sciences, Northwest A&F University, No.3 Taicheng Road, Yangling, Shaanxi 712100, China
Submitted (13-SEP-2017) College of Life Sciences, Northwest A&F University, No. 3 Taicheng Road, Yangling, Shaanxi 712100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP034999.1.\nBacteria and source DNA available from State Key Laboratory of Crop\nStress Biology in Arid Areas, College of Life Sciences, Northwest\nA&F University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 170.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 06:06:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,223\nCDSs (total) :: 7,160\nGenes (coding) :: 6,810\nCDSs (with protein) :: 6,810\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 350\nCDSs (without protein) :: 350\nPseudo Genes (ambiguous residues) :: 0 of 350\nPseudo Genes (frameshifted) :: 234 of 350\nPseudo Genes (incomplete) :: 203 of 350\nPseudo Genes (internal stop) :: 49 of 350\nPseudo Genes (multiple problems) :: 118 of 350\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010974137.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611421.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017270940.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_016558795.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013844528.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014761052.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007636754.1
GO:0008233 - peptidase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012503.2
GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636748.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328976.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019863592.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636742.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
amino acid ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_003528404.1
GO:0046983 - protein dimerization activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
alkyl sulfatase dimerization domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_007636791.1
acetyl-CoA carboxylase biotin carboxylase subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611363.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010975503.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_011053474.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
oxygen-independent coproporphyrinogen III oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_020011686.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_010024976.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677870.1
COORDINATES: similar to AA sequence:RefSeq:WP_009991124.1
COORDINATES: similar to AA sequence:RefSeq:WP_009991126.1
NifX-associated nitrogen fixation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011053415.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006331758.1
GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]
GO:0016163 - nitrogenase activity [Evidence IEA]
GO:0009399 - nitrogen fixation [Evidence IEA]
nitrogenase molybdenum-iron protein subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_003532774.1
nitrogenase molybdenum-iron protein alpha chain
COORDINATES: similar to AA sequence:RefSeq:WP_004675840.1
GO:0016611 - iron-iron nitrogenase complex [Evidence IEA]; GO:0016612 - molybdenum-iron nitrogenase complex [Evidence IEA]; GO:0016613 - vanadium-iron nitrogenase complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003595475.1
COORDINATES: similar to AA sequence:RefSeq:WP_004679687.1
COORDINATES: similar to AA sequence:RefSeq:WP_011084832.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
GO:0009877 - nodulation [Evidence IEA]; GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007635950.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677763.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053483.1
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012778787.1
COORDINATES: similar to AA sequence:RefSeq:WP_003569621.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672573.1
COORDINATES: similar to AA sequence:RefSeq:WP_008840514.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677747.1
COORDINATES: similar to AA sequence:RefSeq:WP_004677746.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635962.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976047.1
COORDINATES: similar to AA sequence:RefSeq:WP_004675975.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: protein motif:HMM:NF016584.2
COORDINATES: protein motif:HMM:NF014503.2
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_017484551.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013593.2
COORDINATES: similar to AA sequence:RefSeq:WP_018496634.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF027488.2
COORDINATES: similar to AA sequence:RefSeq:WP_008533948.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004676279.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_076611470.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011427384.1
COORDINATES: similar to AA sequence:RefSeq:WP_007635973.1
COORDINATES: similar to AA sequence:RefSeq:WP_018067938.1
nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007537192.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018855502.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007635988.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016735572.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017958428.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427545.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016735570.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004672597.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534289.1
COORDINATES: similar to AA sequence:RefSeq:WP_007691372.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247141.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534277.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0071978 - bacterial-type flagellum-dependent swarming motility [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF015187.2
GO:0005576 - extracellular region [Evidence IEA]
GO:0030570 - pectate lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011053325.1
GO:0009306 - protein secretion [Evidence IEA]
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_008534267.1
GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015241680.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636018.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system export apparatus subunit SctR
COORDINATES: similar to AA sequence:RefSeq:WP_012489459.1
FliM/FliN family flagellar motor switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_004672587.1
GO:0046034 - ATP metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636029.1
type III secretion system stator protein SctL
COORDINATES: similar to AA sequence:RefSeq:WP_011053322.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247139.1
type III secretion inner membrane ring lipoprotein SctJ
COORDINATES: similar to AA sequence:RefSeq:WP_004672583.1
COORDINATES: similar to AA sequence:RefSeq:WP_004672582.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053319.1
COORDINATES: similar to AA sequence:RefSeq:WP_019567172.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636038.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636041.1
protein phosphatase 2C domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017957165.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957069.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551129.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003910 - DNA ligase (ATP) activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020048036.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012760577.1
COORDINATES: similar to AA sequence:RefSeq:WP_007627851.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018068201.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: similar to AA sequence:RefSeq:WP_018440878.1
COORDINATES: similar to AA sequence:RefSeq:WP_013843912.1
COORDINATES: similar to AA sequence:RefSeq:WP_018440880.1
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: similar to AA sequence:RefSeq:WP_011053284.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558830.1
COORDINATES: similar to AA sequence:RefSeq:WP_011427421.1
GO:0030246 - carbohydrate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611884.1
COORDINATES: similar to AA sequence:RefSeq:WP_011983064.1
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: similar to AA sequence:RefSeq:WP_011388520.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
iron-sulfur cluster assembly accessory protein
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: protein motif:HMM:NF013624.2
COORDINATES: similar to AA sequence:RefSeq:WP_009996985.1
COORDINATES: similar to AA sequence:RefSeq:WP_011650575.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674376.1
GO:0009374 - biotin binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007755480.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611992.1
COORDINATES: protein motif:HMM:NF015415.2
COORDINATES: similar to AA sequence:RefSeq:WP_002715008.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004674371.1
N-acyl homoserine lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018328800.1
COORDINATES: protein motif:HMM:NF013777.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024214.2
NTP transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018329045.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010034735.1
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_007636110.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737469.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008536029.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636116.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636118.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247165.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489507.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737466.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636126.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018247163.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737465.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011053391.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_007636139.1
COORDINATES: similar to AA sequence:RefSeq:WP_004676101.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489500.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_011053387.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010066437.1
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: similar to AA sequence:RefSeq:WP_004676096.1
COORDINATES: similar to AA sequence:RefSeq:WP_003535142.1
COORDINATES: similar to AA sequence:RefSeq:WP_007823649.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013845385.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967479.1
COORDINATES: similar to AA sequence:RefSeq:WP_003571619.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737456.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636161.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737454.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636165.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016737452.1
COORDINATES: similar to AA sequence:RefSeq:WP_009996879.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_012489489.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673420.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053372.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004673415.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489487.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636185.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636187.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735283.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737445.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018446357.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673403.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489498.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576949.1
COORDINATES: similar to AA sequence:RefSeq:WP_003594536.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017969091.1
COORDINATES: similar to AA sequence:RefSeq:WP_003576948.1
COORDINATES: similar to AA sequence:RefSeq:WP_017992472.1
COORDINATES: similar to AA sequence:RefSeq:WP_007634817.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699041.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559836.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559835.1
COORDINATES: similar to AA sequence:RefSeq:WP_012559834.1
COORDINATES: similar to AA sequence:RefSeq:WP_003585939.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735290.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012559830.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654497.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000356587.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF020419.2
COORDINATES: similar to AA sequence:RefSeq:WP_013984791.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636251.1
COORDINATES: similar to AA sequence:RefSeq:WP_003585917.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558284.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003596966.1
COORDINATES: similar to AA sequence:RefSeq:WP_008874715.1
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008874716.1
COORDINATES: similar to AA sequence:RefSeq:WP_016736107.1
COORDINATES: similar to AA sequence:RefSeq:WP_020809953.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007538502.1
COORDINATES: similar to AA sequence:RefSeq:WP_020809955.1
COORDINATES: similar to AA sequence:RefSeq:WP_018094658.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003587438.1
COORDINATES: similar to AA sequence:RefSeq:WP_008939424.1
COORDINATES: similar to AA sequence:RefSeq:WP_012557269.1
COORDINATES: similar to AA sequence:RefSeq:WP_018925606.1
bifunctional DedA family/phosphatase PAP2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008522977.1
COORDINATES: similar to AA sequence:RefSeq:WP_007537474.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007694599.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735239.1
COORDINATES: similar to AA sequence:RefSeq:WP_007694601.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735237.1
COORDINATES: similar to AA sequence:RefSeq:WP_004125789.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341517.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735234.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_016735233.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016735232.1
COORDINATES: similar to AA sequence:RefSeq:WP_016735231.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008522948.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342130.1
COORDINATES: similar to AA sequence:RefSeq:WP_008522963.1
COORDINATES: similar to AA sequence:RefSeq:WP_015342131.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341871.1
COORDINATES: similar to AA sequence:RefSeq:WP_008522968.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341872.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341873.1
COORDINATES: similar to AA sequence:RefSeq:WP_004111695.1
COORDINATES: similar to AA sequence:RefSeq:WP_018516702.1
COORDINATES: similar to AA sequence:RefSeq:WP_006313517.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501668.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518564.1
COORDINATES: similar to AA sequence:RefSeq:WP_013913040.1
COORDINATES: similar to AA sequence:RefSeq:WP_013419137.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013419136.1
COORDINATES: similar to AA sequence:RefSeq:WP_006200010.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330531.1
COORDINATES: similar to AA sequence:RefSeq:WP_013847919.1
COORDINATES: similar to AA sequence:RefSeq:WP_018899371.1
COORDINATES: similar to AA sequence:RefSeq:WP_019565689.1
COORDINATES: similar to AA sequence:RefSeq:WP_003517409.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012755612.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567898.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: similar to AA sequence:RefSeq:WP_016736164.1
COORDINATES: similar to AA sequence:RefSeq:WP_010068053.1
COORDINATES: similar to AA sequence:RefSeq:WP_003595910.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_008532972.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737406.1
COORDINATES: similar to AA sequence:RefSeq:WP_003554271.1
COORDINATES: similar to AA sequence:RefSeq:WP_016555911.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247142.1
COORDINATES: similar to AA sequence:RefSeq:WP_017958375.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018247044.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636332.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469870.1
COORDINATES: similar to AA sequence:RefSeq:WP_007459086.1
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017492067.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636340.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636342.1
COORDINATES: similar to AA sequence:RefSeq:WP_007692915.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636351.1
2-oxoglutarate and iron-dependent oxygenase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636353.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636370.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636372.1
rhodanese-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636374.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007794133.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016558366.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004445472.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859505.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690470.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859507.1
COORDINATES: similar to AA sequence:RefSeq:WP_007534430.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018859509.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636394.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636399.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636401.1
COORDINATES: similar to AA sequence:RefSeq:WP_018859513.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649472.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636408.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018115895.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115896.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690456.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007690454.1
COORDINATES: similar to AA sequence:RefSeq:WP_012649478.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636420.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007690636.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690634.1
COORDINATES: similar to AA sequence:RefSeq:WP_007690633.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611444.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISRel21 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012489435.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 3 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018328921.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328920.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341913.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015341912.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636440.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636442.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341910.1
COORDINATES: similar to AA sequence:RefSeq:WP_004130091.1
COORDINATES: similar to AA sequence:RefSeq:WP_004130093.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018328913.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984725.1
COORDINATES: similar to AA sequence:RefSeq:WP_004130101.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009987854.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636455.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018328908.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636460.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328906.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0052873 - FMN reductase (NADPH) activity [Evidence IEA]; GO:0008752 - FMN reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328905.1
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]
3,4-dihydroxy-2-butanone-4-phosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_013637293.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636470.1
COORDINATES: protein motif:HMM:NF019974.2
nitrate- and nitrite sensing domain-containing protein
COORDINATES: protein motif:HMM:NF012245.2
GO:0098561 - methyl accepting chemotaxis protein complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636478.1
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_012760201.1
COORDINATES: similar to AA sequence:RefSeq:WP_010356417.1
COORDINATES: similar to AA sequence:RefSeq:WP_018270530.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018328824.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328825.1
GO:0018784 - (S)-2-haloacid dehalogenase activity [Evidence IEA]
GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328826.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129804.1
isocitrate/isopropylmalate dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004129802.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328829.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129795.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004129793.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328832.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004129789.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004129787.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328835.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis, and/or gluconeogenesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018444789.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007817073.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_018328838.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129782.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328840.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129780.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_018328842.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636546.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129775.1
COORDINATES: similar to AA sequence:RefSeq:WP_012707228.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328846.1
ribulose-bisphosphate carboxylase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004129768.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636554.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328849.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636560.1
COORDINATES: similar to AA sequence:RefSeq:WP_016150210.1
COORDINATES: similar to AA sequence:RefSeq:WP_002965778.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004129756.1
COORDINATES: similar to AA sequence:RefSeq:WP_008534165.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_012489432.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328855.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636573.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654075.1
COORDINATES: similar to AA sequence:RefSeq:WP_007737376.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530262.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328844.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612398.1
COORDINATES: similar to AA sequence:RefSeq:WP_007746076.1
COORDINATES: similar to AA sequence:RefSeq:WP_003598465.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477253.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636577.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129707.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004129705.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636580.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668623.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636582.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668627.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341892.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668632.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668634.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_018328872.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489473.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328889.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737438.1
COORDINATES: similar to AA sequence:RefSeq:WP_004129665.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671509.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671507.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671505.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004671504.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636602.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636604.1
COORDINATES: similar to AA sequence:RefSeq:WP_018328898.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_018328899.1
COORDINATES: similar to AA sequence:RefSeq:WP_014761245.1
COORDINATES: similar to AA sequence:RefSeq:WP_018482044.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611390.1
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189972.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
COORDINATES: similar to AA sequence:RefSeq:WP_007234514.1
COORDINATES: similar to AA sequence:RefSeq:WP_010799682.1
COORDINATES: similar to AA sequence:RefSeq:WP_007538552.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636621.1
COORDINATES: similar to AA sequence:RefSeq:WP_007539642.1
COORDINATES: similar to AA sequence:RefSeq:WP_004118281.1
COORDINATES: similar to AA sequence:RefSeq:WP_004118282.1
COORDINATES: similar to AA sequence:RefSeq:WP_018246141.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680432.1
COORDINATES: similar to AA sequence:RefSeq:WP_004680430.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0033103 - protein secretion by the type VI secretion system [Evidence IEA]
type VI secretion system tip protein TssI/VgrG
COORDINATES: similar to AA sequence:RefSeq:WP_018238562.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR03347.1
type VI secretion system baseplate subunit TssG
COORDINATES: similar to AA sequence:RefSeq:WP_004680428.1
type VI secretion system baseplate subunit TssF
COORDINATES: similar to AA sequence:RefSeq:WP_004680427.1
type VI secretion system baseplate subunit TssE
COORDINATES: similar to AA sequence:RefSeq:WP_007636660.1
type VI secretion system tube protein Hcp
COORDINATES: similar to AA sequence:RefSeq:WP_004680425.1
GO:0033104 - type VI protein secretion system complex [Evidence IEA]
type VI secretion system contractile sheath large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_016737476.1
type VI secretion system contractile sheath small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004680423.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611843.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489520.1
COORDINATES: similar to AA sequence:RefSeq:WP_010069402.1
type VI secretion system baseplate subunit TssK
COORDINATES: protein motif:HMM:NF012708.2
COORDINATES: similar to AA sequence:RefSeq:WP_012489524.1
type IVB secretion system protein IcmH/DotU
COORDINATES: similar to AA sequence:RefSeq:WP_012489525.1
type VI secretion system membrane subunit TssM
COORDINATES: similar to AA sequence:RefSeq:WP_012489526.1
COORDINATES: similar to AA sequence:RefSeq:WP_006333887.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053454.1
GO:0009058 - biosynthetic process [Evidence IEA]
carbamoyltransferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636678.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636679.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913584.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536079.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489533.1
GO:0008234 - cysteine-type peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489534.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611442.1
programmed frameshift; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014901.2
COORDINATES: similar to AA sequence:RefSeq:WP_010875204.1
leucine zipper domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018517062.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636707.1
COORDINATES: similar to AA sequence:RefSeq:WP_041684032.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654719.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827581.1
COORDINATES: similar to AA sequence:RefSeq:WP_009804912.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566774.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018236217.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004128902.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558771.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002722857.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558773.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517533.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863393.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636750.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007636749.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611730.1
COORDINATES: similar to AA sequence:RefSeq:WP_009797950.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636804.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636806.1
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007636807.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636808.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636809.1
COORDINATES: similar to AA sequence:RefSeq:WP_013851068.1
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012330260.1
COORDINATES: similar to AA sequence:RefSeq:WP_007825401.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636815.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341606.1
amino acid--[acyl-carrier-protein] ligase
COORDINATES: similar to AA sequence:RefSeq:WP_007692245.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558415.1
COORDINATES: protein motif:HMM:NF022540.2
exopolysaccharide production repressor protein
COORDINATES: similar to AA sequence:RefSeq:WP_007636839.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737533.1
GO:0051540 - metal cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004672660.1
nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
COORDINATES: similar to AA sequence:RefSeq:WP_007636851.1
COORDINATES: similar to AA sequence:RefSeq:WP_006199572.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636855.1
COORDINATES: protein motif:HMM:NF018595.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017499263.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010009905.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017964666.1
COORDINATES: similar to AA sequence:RefSeq:WP_016733322.1
responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018097504.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678547.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004678546.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536553.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636873.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008536550.1
nitrogenase stabilizing/protective protein NifW
COORDINATES: similar to AA sequence:RefSeq:WP_016558440.1
GO:0009055 - electron transfer activity [Evidence IEA]
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536549.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008536548.1
COORDINATES: similar to AA sequence:RefSeq:WP_011970923.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247198.1
GO:0009399 - nitrogen fixation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
nif-specific transcriptional activator NifA
COORDINATES: similar to AA sequence:RefSeq:WP_011053432.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
nitrogenase cofactor biosynthesis protein NifB
COORDINATES: similar to AA sequence:RefSeq:WP_008536545.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536544.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636888.1
COORDINATES: similar to AA sequence:RefSeq:WP_004678511.1
COORDINATES: similar to AA sequence:RefSeq:WP_004126138.1
GO:0045303 - diaminobutyrate-2-oxoglutarate transaminase activity [Evidence IEA]
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_007636896.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612018.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671991.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018328735.1
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014526.2
COORDINATES: similar to AA sequence:RefSeq:WP_004671987.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247203.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558719.1
COORDINATES: similar to AA sequence:RefSeq:WP_011084489.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636915.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633476.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_011084944.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737498.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838317.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053443.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673819.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489562.1
COORDINATES: similar to AA sequence:RefSeq:WP_010913628.1
catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011053350.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188732.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654837.1
COORDINATES: similar to AA sequence:RefSeq:WP_014327878.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636960.1
GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018247190.1
COORDINATES: similar to AA sequence:RefSeq:WP_007636964.1
COORDINATES: similar to AA sequence:RefSeq:WP_004673815.1
COORDINATES: similar to AA sequence:RefSeq:WP_010009888.1
GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018247185.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247211.1
COORDINATES: similar to AA sequence:RefSeq:WP_004679185.1
COORDINATES: similar to AA sequence:RefSeq:WP_012489415.1
COORDINATES: protein motif:HMM:NF016439.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611153.1
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012489573.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247214.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536490.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536489.1
COORDINATES: similar to AA sequence:RefSeq:WP_018247215.1
nodulation factor ABC transporter ATP-binding protein NodI
COORDINATES: similar to AA sequence:RefSeq:WP_004125972.1
carbamoyltransferase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004679207.1
COORDINATES: similar to AA sequence:RefSeq:WP_008536483.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0009312 - oligosaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007636999.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004679213.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF017630.2
COORDINATES: similar to AA sequence:RefSeq:WP_004674430.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674428.1
COORDINATES: similar to AA sequence:RefSeq:WP_003549679.1
GO:0008535 - respiratory chain complex IV assembly [Evidence IEA]
cbb3-type cytochrome oxidase assembly protein CcoS
COORDINATES: similar to AA sequence:RefSeq:WP_004674422.1
COORDINATES: similar to AA sequence:RefSeq:WP_011053472.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654242.1
cytochrome c oxidase accessory protein CcoG
COORDINATES: similar to AA sequence:RefSeq:WP_003590892.1
COORDINATES: similar to AA sequence:RefSeq:WP_020048100.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
cytochrome-c oxidase, cbb3-type subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_007795252.1
cbb3-type cytochrome c oxidase subunit 3
COORDINATES: similar to AA sequence:RefSeq:WP_016737483.1
cytochrome-c oxidase, cbb3-type subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_003549660.1
cytochrome-c oxidase, cbb3-type subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003581460.1
COORDINATES: similar to AA sequence:RefSeq:WP_016737107.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]