Streptomyces lunaelactis strain MM109 plasmid pSLUN2, complete sequence.
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.
Complete genome sequence of Streptomyces lunaelactis MM109T, a Ferroverdin A producer isolated from cave moonmilk deposits
Submitted (23-JAN-2018) InBioS (Integrative Biological Sciences), Center for Protein Engineering, Allee de la Chimie, 3, Liege 4000, Belgium
REFSEQ INFORMATION: The reference sequence is identical to\nCP026306.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 193.7x\nSequencing Technology :: Illumina HiSeq; Illumina MiSeq; ONT\n MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/09/2022 09:41:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,839\nCDSs (total) :: 7,750\nGenes (coding) :: 7,325\nCDSs (with protein) :: 7,325\nGenes (RNA) :: 89\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 3\nPseudo Genes (total) :: 425\nCDSs (without protein) :: 425\nPseudo Genes (ambiguous residues) :: 0 of 425\nPseudo Genes (frameshifted) :: 165 of 425\nPseudo Genes (incomplete) :: 322 of 425\nPseudo Genes (internal stop) :: 24 of 425\nPseudo Genes (multiple problems) :: 80 of 425\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018845101.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019527590.1
COORDINATES: similar to AA sequence:RefSeq:WP_011554459.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006351135.1
COORDINATES: protein motif:HMM:NF015620.2
COORDINATES: similar to AA sequence:RefSeq:WP_018471219.1
COORDINATES: protein motif:HMM:NF020332.2
COORDINATES: similar to AA sequence:RefSeq:WP_014386297.1
COORDINATES: similar to AA sequence:RefSeq:WP_003952307.1
COORDINATES: protein motif:HMM:NF025186.2
COORDINATES: similar to AA sequence:RefSeq:WP_009193390.1
COORDINATES: protein motif:HMM:NF025107.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007502357.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039389.1
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: similar to AA sequence:RefSeq:WP_018733817.1
COORDINATES: similar to AA sequence:RefSeq:WP_018739306.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.