Streptomyces lunaelactis strain MM109 plasmid pSLUN1, complete sequence.
Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.
Complete genome sequence of Streptomyces lunaelactis MM109T, a Ferroverdin A producer isolated from cave moonmilk deposits
Submitted (23-JAN-2018) InBioS (Integrative Biological Sciences), Center for Protein Engineering, Allee de la Chimie, 3, Liege 4000, Belgium
REFSEQ INFORMATION: The reference sequence is identical to\nCP026305.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.5\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 193.7x\nSequencing Technology :: Illumina HiSeq; Illumina MiSeq; ONT\n MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/09/2022 09:41:19\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,839\nCDSs (total) :: 7,750\nGenes (coding) :: 7,325\nCDSs (with protein) :: 7,325\nGenes (RNA) :: 89\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 3\nPseudo Genes (total) :: 425\nCDSs (without protein) :: 425\nPseudo Genes (ambiguous residues) :: 0 of 425\nPseudo Genes (frameshifted) :: 165 of 425\nPseudo Genes (incomplete) :: 322 of 425\nPseudo Genes (internal stop) :: 24 of 425\nPseudo Genes (multiple problems) :: 80 of 425\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF017542.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013473933.1
COORDINATES: similar to AA sequence:RefSeq:WP_016435759.1
COORDINATES: similar to AA sequence:RefSeq:WP_014151252.1
COORDINATES: similar to AA sequence:RefSeq:WP_006125606.1
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006604575.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018092334.1
COORDINATES: similar to AA sequence:RefSeq:WP_016645659.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979648.1
COORDINATES: similar to AA sequence:RefSeq:WP_009716688.1
COORDINATES: similar to AA sequence:RefSeq:WP_006348198.1
COORDINATES: similar to AA sequence:RefSeq:WP_020666101.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019526146.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_016641420.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
GO:0006525 - arginine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014671619.1
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014044901.1
GO:0004358 - glutamate N-acetyltransferase activity [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
COORDINATES: similar to AA sequence:RefSeq:WP_011856103.1
COORDINATES: similar to AA sequence:RefSeq:WP_020553942.1
COORDINATES: similar to AA sequence:RefSeq:WP_009719705.1
FMN-binding negative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016641413.1
COORDINATES: similar to AA sequence:RefSeq:WP_014154529.1
GO:0046417 - chorismate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_018803939.1
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: protein motif:HMM:NF013166.2
COORDINATES: similar to AA sequence:RefSeq:WP_016645013.1
COORDINATES: similar to AA sequence:RefSeq:WP_016645012.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009945513.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106306.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018105944.1
bacterial transcriptional activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018105948.1
COORDINATES: similar to AA sequence:RefSeq:WP_016578788.1
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015608524.1
COORDINATES: similar to AA sequence:RefSeq:WP_012893909.1
COORDINATES: similar to AA sequence:RefSeq:WP_009314190.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014670401.1
acetoacetate decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009712444.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014670394.1
Members of this family of hydrolases with an active site Cys residue belong to MEROPS family C26; Derived by automated computational analysis using gene prediction method: Protein Homology.
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003996162.1
COORDINATES: similar to AA sequence:RefSeq:WP_003996168.1
COORDINATES: similar to AA sequence:RefSeq:WP_006383696.1
COORDINATES: similar to AA sequence:RefSeq:WP_014058939.1
GO:0003824 - catalytic activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005154137.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_004992830.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005477046.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015036395.1
GO:0043714 - (R)-citramalate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020207396.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106309.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007268976.1
AfsR/SARP family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006344621.1
COORDINATES: similar to AA sequence:RefSeq:WP_005321617.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010985133.1
ScbR family autoregulator-binding transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_006344625.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828556.1
COORDINATES: similar to AA sequence:RefSeq:WP_018548735.1
COORDINATES: similar to AA sequence:RefSeq:WP_010985137.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014181913.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_003963347.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039494.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003963345.1
COORDINATES: similar to AA sequence:RefSeq:WP_006134630.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053671.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005310851.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011029635.1
COORDINATES: similar to AA sequence:RefSeq:WP_017621785.1
COORDINATES: similar to AA sequence:RefSeq:WP_012379868.1
COORDINATES: protein motif:HMM:NF024758.2
trypsin-like peptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013476802.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006608156.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_010641759.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449488.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012891692.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106296.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043630.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_014058635.1