Metabacillus endolithicus strain KCTC 33579 plasmid pMb-1, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Metabacillus.
Metabacillus endolithicus type strain genome analysis
Submitted (11-APR-2022) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP095551.1.\nBacteria and source DNA available from KCTC 33579.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Miniasm v. 0.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 69.5x\nSequencing Technology :: Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/11/2023 05:02:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,497\nCDSs (total) :: 5,298\nGenes (coding) :: 4,750\nCDSs (with protein) :: 4,750\nGenes (RNA) :: 199\nrRNAs :: 16, 15, 15 (5S, 16S, 23S)\ncomplete rRNAs :: 16, 15, 15 (5S, 16S, 23S)\ntRNAs :: 146\nncRNAs :: 7\nPseudo Genes (total) :: 549\nCDSs (without protein) :: 548\nPseudo Genes (ambiguous residues) :: 0 of 549\nPseudo Genes (frameshifted) :: 503 of 549\nPseudo Genes (incomplete) :: 53 of 549\nPseudo Genes (internal stop) :: 14 of 549\nPseudo Genes (multiple problems) :: 19 of 549\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
pebbles collected from Pingleshwar beach
COORDINATES: similar to AA sequence:RefSeq:WP_013489643.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_007084054.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]; GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
cytochrome aa3 quinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_019121471.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019121470.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]; GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
cytochrome aa3 quinol oxidase subunit III
COORDINATES: similar to AA sequence:RefSeq:WP_008405415.1
cytochrome aa3 quinol oxidase subunit IV
COORDINATES: similar to AA sequence:RefSeq:WP_013489921.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015085.2
COORDINATES: protein motif:HMM:NF027651.2
COORDINATES: protein motif:HMM:NF015853.2
cytochrome c-type biogenesis protein CcmH
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF015344.2
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013725.2
COORDINATES: protein motif:HMM:TIGR04391.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF012787.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021214.2
COORDINATES: similar to AA sequence:RefSeq:WP_010025834.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_007506582.1
COORDINATES: similar to AA sequence:RefSeq:WP_003322275.1
COORDINATES: protein motif:HMM:NF016149.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019380872.1
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF020264.2
COORDINATES: similar to AA sequence:RefSeq:WP_010898134.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000684984.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001226076.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019156603.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015142011.1
mercury resistance system transport protein MerF
COORDINATES: similar to AA sequence:RefSeq:WP_250634606.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002360746.1
COORDINATES: protein motif:HMM:NF012621.2
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001031939.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019412485.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006194222.1
COORDINATES: similar to AA sequence:RefSeq:WP_012887640.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012630.2
GO:0031012 - extracellular matrix [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001001385.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002029026.1
phosphoadenosine phosphosulfate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_016766725.1
COORDINATES: protein motif:HMM:NF022953.2
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: similar to AA sequence:RefSeq:WP_008637926.1
COORDINATES: protein motif:HMM:NF039653.1
COORDINATES: protein motif:HMM:NF013658.2
GO:0003824 - catalytic activity [Evidence IEA]
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: similar to AA sequence:RefSeq:WP_019381958.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009335136.1
COORDINATES: similar to AA sequence:RefSeq:WP_008433044.1
COORDINATES: protein motif:HMM:NF020945.2
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016123317.1
COORDINATES: protein motif:HMM:NF024427.2
COORDINATES: similar to AA sequence:RefSeq:WP_004429650.1
COORDINATES: similar to AA sequence:RefSeq:WP_016992341.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF019097.2
COORDINATES: similar to AA sequence:RefSeq:WP_010289560.1
COORDINATES: similar to AA sequence:RefSeq:WP_003182134.1
COORDINATES: similar to AA sequence:RefSeq:WP_007200137.1
COORDINATES: similar to AA sequence:RefSeq:WP_053400514.1
COORDINATES: similar to AA sequence:RefSeq:WP_002071617.1
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_000064066.1
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: similar to AA sequence:RefSeq:WP_010898493.1
COORDINATES: protein motif:HMM:NF025502.2
COORDINATES: similar to AA sequence:RefSeq:WP_014255905.1
COORDINATES: similar to AA sequence:RefSeq:WP_009710827.1
COORDINATES: similar to AA sequence:RefSeq:WP_019156279.1
COORDINATES: similar to AA sequence:RefSeq:WP_000716605.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612119.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025918.2
COORDINATES: similar to AA sequence:RefSeq:WP_018707042.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025903.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF017655.2
COORDINATES: similar to AA sequence:RefSeq:WP_005552129.1
COORDINATES: protein motif:HMM:NF036696.2
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_016995625.1
GO:0003953 - NAD+ nucleosidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000877833.1
COORDINATES: similar to AA sequence:RefSeq:WP_008430012.1
COORDINATES: similar to AA sequence:RefSeq:WP_018131482.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017247009.1
COORDINATES: similar to AA sequence:RefSeq:WP_016114076.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042834 - peptidoglycan binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
peptidoglycan recognition family protein
COORDINATES: protein motif:HMM:NF013625.2
GO:0042834 - peptidoglycan binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019240747.1
GO:0008955 - peptidoglycan glycosyltransferase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
biosynthetic peptidoglycan transglycosylase
COORDINATES: similar to AA sequence:RefSeq:WP_019413923.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003327279.1
GO:0008658 - penicillin binding [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015594012.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009795725.1
COORDINATES: protein motif:HMM:NF015552.2
COORDINATES: similar to AA sequence:RefSeq:WP_011247591.1
alpha/beta-type small acid-soluble spore protein
COORDINATES: similar to AA sequence:RefSeq:WP_003252392.1
GO:0005506 - iron ion binding [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]
iron-sulfur cluster repair di-iron protein
COORDINATES: similar to AA sequence:RefSeq:WP_008879028.1
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017251307.1
COORDINATES: similar to AA sequence:RefSeq:WP_009333498.1
molybdopterin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007086371.1
COORDINATES: similar to AA sequence:RefSeq:WP_009333501.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009333504.1
COORDINATES: similar to AA sequence:RefSeq:WP_019415034.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00254.1
sensor domain-containing diguanylate cyclase
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015844310.1
COORDINATES: similar to AA sequence:RefSeq:WP_019413829.1
COORDINATES: similar to AA sequence:RefSeq:WP_018934029.1
COORDINATES: similar to AA sequence:RefSeq:WP_008587686.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_017466553.1
COORDINATES: similar to AA sequence:RefSeq:WP_002581263.1
COORDINATES: similar to AA sequence:RefSeq:WP_019152401.1
COORDINATES: similar to AA sequence:RefSeq:WP_014642997.1
COORDINATES: similar to AA sequence:RefSeq:WP_016132974.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF015755.2
COORDINATES: similar to AA sequence:RefSeq:WP_016428961.1
COORDINATES: similar to AA sequence:RefSeq:NP_390514.1
COORDINATES: similar to AA sequence:RefSeq:WP_019381043.1
COORDINATES: protein motif:HMM:NF016024.2
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:NF019997.2
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF039493.1
COORDINATES: protein motif:HMM:NF024078.2
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: similar to AA sequence:RefSeq:WP_016089814.1
reverse transcriptase/maturase family protein
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612077.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000462861.1
COORDINATES: similar to AA sequence:RefSeq:WP_003348173.1
COORDINATES: similar to AA sequence:RefSeq:WP_016204228.1
COORDINATES: protein motif:HMM:NF013235.2
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012870.2
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_002016740.1
COORDINATES: protein motif:HMM:NF021897.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF020250.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: similar to AA sequence:RefSeq:WP_000086364.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF020123.2
GO:0016209 - antioxidant activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015100.2
RnfABCDGE type electron transport complex subunit D
COORDINATES: similar to AA sequence:RefSeq:WP_017754889.1
COORDINATES: protein motif:HMM:NF015515.2
COORDINATES: protein motif:HMM:NF023095.2
COORDINATES: similar to AA sequence:RefSeq:WP_012158948.1
COORDINATES: similar to AA sequence:RefSeq:WP_012959013.1
COORDINATES: similar to AA sequence:RefSeq:WP_018131871.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]