Kozakia baliensis strain NBRC 16680 plasmid pKB16680_3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Kozakia.
Dissection of exopolysaccharide biosynthesis in Kozakia baliensis
Submitted (08-MAR-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel Str. 4, Freising 85354, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP014684.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: TMW2.1340_1\nLong Assembly Name :: Kozakia baliensis NBRC16680_1\nGenome Coverage :: 72\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 17:05:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,988\nCDSs (total) :: 2,912\nGenes (coding) :: 2,845\nCDSs (with protein) :: 2,845\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 25 of 67\nPseudo Genes (incomplete) :: 54 of 67\nPseudo Genes (internal stop) :: 13 of 67\nPseudo Genes (multiple problems) :: 21 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008069558.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019352.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:NF012343.2
COORDINATES: similar to AA sequence:RefSeq:WP_009823602.1
COORDINATES: similar to AA sequence:RefSeq:WP_019410668.1
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity [Evidence IEA]
GO:0015990 - electron transport coupled proton transport [Evidence IEA]
cytochrome o ubiquinol oxidase subunit IV
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF016830.2
COORDINATES: similar to AA sequence:RefSeq:WP_019086723.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019086722.1
GO:0004806 - triglyceride lipase activity [Evidence IEA]
GO:0016042 - lipid catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015803.2
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF016154.2
COORDINATES: similar to AA sequence:RefSeq:WP_012553751.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006401347.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813374.1
COORDINATES: protein motif:HMM:NF012870.2
Mu transposase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024412.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003630649.1
COORDINATES: similar to AA sequence:RefSeq:WP_001549957.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396320.1
COORDINATES: similar to AA sequence:RefSeq:WP_006559416.1
COORDINATES: similar to AA sequence:RefSeq:WP_006559415.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511350.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092482.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612398.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010512305.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665984.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813386.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396251.1
COORDINATES: similar to AA sequence:RefSeq:WP_010665981.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088721.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_010512615.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010668423.1
COORDINATES: similar to AA sequence:RefSeq:WP_014106725.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088724.1
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:NF012801.2