Kozakia baliensis strain NBRC 16680 plasmid pKB16680_2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Kozakia.
Dissection of exopolysaccharide biosynthesis in Kozakia baliensis
Submitted (08-MAR-2016) Technische Mikrobiologie, Technische Universitaet Muenchen, Gregor-Mendel Str. 4, Freising 85354, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP014683.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Celera Assembler v. 1\nAssembly Name :: TMW2.1340_1\nLong Assembly Name :: Kozakia baliensis NBRC16680_1\nGenome Coverage :: 72\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 17:05:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,988\nCDSs (total) :: 2,912\nGenes (coding) :: 2,845\nCDSs (with protein) :: 2,845\nGenes (RNA) :: 76\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 4\nPseudo Genes (total) :: 67\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 67\nPseudo Genes (frameshifted) :: 25 of 67\nPseudo Genes (incomplete) :: 54 of 67\nPseudo Genes (internal stop) :: 13 of 67\nPseudo Genes (multiple problems) :: 21 of 67\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_007257056.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611570.1
GO:0015074 - DNA integration [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009488589.1
COORDINATES: similar to AA sequence:RefSeq:WP_019087174.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012813117.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505557.1
type I restriction-modification system subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_010510561.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003618731.1
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010668756.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396344.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007284435.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007400750.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618725.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003630454.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010512535.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630457.1
DUF3991 and TOPRIM domain-containing protein
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: similar to AA sequence:RefSeq:WP_017501906.1
DNA polymerase involved in damage-induced mutagenesis and translesion synthesis. It is not the major replicative DNA polymerase.; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006560347.1
COORDINATES: similar to AA sequence:RefSeq:WP_012092590.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007396143.1
COORDINATES: similar to AA sequence:RefSeq:WP_013039026.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618791.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007284432.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019088956.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618801.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019092215.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019088954.1
COORDINATES: similar to AA sequence:RefSeq:WP_007398708.1
COORDINATES: protein motif:HMM:NF019976.2
nuclease-related domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017134811.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_019092489.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_010511736.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089472.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626515.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012817656.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012817657.1
putative addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_003630486.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396596.1
COORDINATES: protein motif:HMM:NF014548.2
COORDINATES: similar to AA sequence:RefSeq:WP_010510539.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626889.1
COORDINATES: similar to AA sequence:RefSeq:WP_014106803.1
COORDINATES: similar to AA sequence:RefSeq:WP_018237956.1
COORDINATES: similar to AA sequence:RefSeq:WP_018860470.1
COORDINATES: similar to AA sequence:RefSeq:WP_010505746.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_014989572.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008970546.1
COORDINATES: similar to AA sequence:RefSeq:WP_018156650.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009490379.1
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_019015344.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989571.1
COORDINATES: similar to AA sequence:RefSeq:WP_019460108.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014989573.1
COORDINATES: similar to AA sequence:RefSeq:WP_019085861.1