Conchiformibius steedae strain DSM 2580 plasmid pDSM2580_2, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Conchiformibius.
Genomic diversity of species in the Neisseriaceae family
Submitted (22-JUL-2020) Microbiology, INRS-Institut Armand-Frappier, 531 Bd des Prairies, Laval, Quebec H7V1B7, Canada
REFSEQ INFORMATION: The reference sequence is identical to\nCP059562.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:59:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,166\nCDSs (total) :: 2,092\nGenes (coding) :: 2,072\nCDSs (with protein) :: 2,072\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 6 of 20\nPseudo Genes (incomplete) :: 14 of 20\nPseudo Genes (internal stop) :: 1 of 20\nPseudo Genes (multiple problems) :: 1 of 20\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010895252.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010895251.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003448670.1
COORDINATES: similar to AA sequence:RefSeq:WP_005132694.1
COORDINATES: similar to AA sequence:RefSeq:WP_014900394.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004724853.1
COORDINATES: similar to AA sequence:RefSeq:WP_004724852.1
GO:0018576 - catechol 1,2-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004863119.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000359628.1
COORDINATES: similar to AA sequence:RefSeq:WP_004671790.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005082511.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004752213.1
COORDINATES: similar to AA sequence:RefSeq:WP_001608780.1
COORDINATES: similar to AA sequence:RefSeq:WP_005713224.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015939725.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611222.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017496.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013828.2
COORDINATES: protein motif:HMM:NF033546.1
COORDINATES: similar to AA sequence:RefSeq:WP_019561712.1
COORDINATES: similar to AA sequence:RefSeq:WP_019271407.1
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF024728.2
COORDINATES: similar to AA sequence:RefSeq:WP_003668537.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002244216.1
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015803.2
COORDINATES: similar to AA sequence:RefSeq:WP_017879230.1
COORDINATES: similar to AA sequence:RefSeq:WP_003781471.1
COORDINATES: similar to AA sequence:RefSeq:WP_014778566.1
COORDINATES: similar to AA sequence:RefSeq:WP_006986991.1
COORDINATES: similar to AA sequence:RefSeq:WP_002642070.1
COORDINATES: similar to AA sequence:RefSeq:WP_012031519.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
TerC/Alx family metal homeostasis membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_005690486.1
COORDINATES: protein motif:HMM:NF025053.2
PP2C family serine/threonine-protein phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_005690491.1
TerY-C metal binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018604800.1
COORDINATES: similar to AA sequence:RefSeq:WP_002641517.1
COORDINATES: similar to AA sequence:RefSeq:WP_018347220.1
COORDINATES: similar to AA sequence:RefSeq:WP_018339601.1
COORDINATES: protein motif:HMM:NF012196.1
COORDINATES: protein motif:HMM:NF013235.2