Conchiformibius steedae strain DSM 2580 plasmid pDSM2580_1, complete sequence.
type: Entry
definition: Conchiformibius steedae strain DSM 2580 plasmid pDSM2580_1, complete sequence.
sequence version: NZ_CP059561.1
sequence date: 2023-03-25
sequence: sequence
division: CON
label: NZ_CP059561.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15603187
keyword: RefSeq
source: Conchiformibius steedae
organism: Conchiformibius steedae
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Conchiformibius.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP059561.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:59:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,166\nCDSs (total) :: 2,092\nGenes (coding) :: 2,072\nCDSs (with protein) :: 2,072\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 6 of 20\nPseudo Genes (incomplete) :: 14 of 20\nPseudo Genes (internal stop) :: 1 of 20\nPseudo Genes (multiple problems) :: 1 of 20\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 25740
topology: circular
so has quality: SO_0000988
location: 1..25740
location: region:1-25740:1
RO_0002162: 153493

NZ_CP059561
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15603187
type: BioSample
SIO_000068: biosample

1
title: Genomic diversity of species in the Neisseriaceae family
author: Vincent, A.T.
author: Bernet, E.
author: Veyrier, F.J.
journal: Unpublished

2
title: Direct Submission
author: Vincent, A.T.
author: Bernet, E.
author: Veyrier, F.J.
journal: Submitted (22-JUL-2020) Microbiology, INRS-Institut Armand-Frappier, 531 Bd des Prairies, Laval, Quebec H7V1B7, Canada

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25740:1
position: 25740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-25740:1:source
so part of: sequence
organism: Conchiformibius steedae
mol type: genomic DNA
strain: DSM 2580
host: dog
culture collection: ATCC:27409
culture collection: DSM:2580
type material: type strain of Simonsiella steedae
plasmid: pDSM2580_1
collection date: 1982

153493
type: Taxonomy
SIO_000068: taxonomy

H3L98_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
gene: repM
locus tag: H3L98_RS00005
old locus tag: H3L98_00005
so part of: sequence
location: 123..1229
location: region:123-1229:1
so has part: feature:123-1229:1:exon
subclass of: SO_0000010

position:123:1
position: 123
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1229:1
position: 1229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:123-1229:1:exon

H3L98_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
gene: repM
locus tag: H3L98_RS00005
old locus tag: H3L98_00005
inference: COORDINATES: protein motif:HMM:NF038290.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MGNLIVKDNALIEASHKLNEVEQRIILLAILKAREVSDTVEELKGKNLTIHASDYISHFRVDKSTAYRVLKKTVVSLFRAEWGYKFINNKGQSQVAYRRFIQSADYIENGASIQFKFSDDIIPFLVELEKRFTTYEVKQVSKLSSGYAMRLYEFFMQHLDKKAGKGWLEISLDDLRFRFGLLPTEYKGMSDFKRYVLNFSLKQINERTDLTATYEQRKQGRVITGFRFEFIKNQPKPKKTKTAPQPDWFAEFSEEERTAIQERIADHIARLEASGEIVSDFHRQNITQKAVAERWGLDVLEQKKKKKQKDDKKKASEQAWQNIPDGTRFRSTKDGSIWRKDVGSLVDEYNRFVPEFMIVDFLQYLEEI
SIO_010081: H3L98_RS00005
subclass of: SO_0000673
so part of: H3L98_RS00005
location: 123..1229
location: region:123-1229:1
so has part: feature:123-1229:1:exon

WP_182078410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:123-1229:1:exon

H3L98_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00010
old locus tag: H3L98_00010
so part of: sequence
location: complement(1284..7043)
location: region:1284-7043:-1
so has part: feature:1284-7043:-1:exon
subclass of: SO_0000010

position:1284:-1
position: 1284
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7043:-1
position: 7043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1284-7043:-1:exon

H3L98_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00010
old locus tag: H3L98_00010
inference: COORDINATES: protein motif:HMM:NF017183.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative Ig domain-containing protein
translation: MAVFGGQHGAFFKQLGGNFIYLHSDNQAAERAQRLLSDNKDLFGDLSVGGAHHYGNHGSYNEVVKDRLEKIFTNGNFSQEQKQMMVLDLQRGLKELLIENNPNTIMTTANNEEIATAIDNALERKGIYSPTNPDDTIARRLLNDFNADLHKPDTERFLTRKFGDTGTGEIAKSTGNKILKNIGELNKVTQFISDTGQKYFDRKDIGTFGKKEIANATEARQLIYHTTYDVERFLTAADVFKDANGQSTFDSKSLNDFLVKFKTAVNHSLTDGKDPSDSLKYLAERPLDAKAAKLLADLRTAMGNRSNKVFLHFNDVDMSKLDNNTLQKNALNDVFDFLEKTDRFDNISLNGMKIGEWKSYLNPPNGGSGSNGDSSKTISLKEKVLGKVSQDTKLFNIRNAKFKFNLENFKDFILNEDKTLTEQEKQRLSKYNKEFFDNFYAHLDKDALLEKTKAYLNSSSEFIKTNSVDVVKNSATTKGAFALFLLGLSGVATAKAVESAPAEEQKQVLVDIALSEVVSEVASQAAEFGMKSLISAAVGTGLVMVPGPVAAVATLFVGIVAGMYGEDIYELTKDLDKNGRMDFVDRMSTLMFGQDIKPNQIPEVLSRQLANNFKTQKVELSAEMSVQELVAKAKENIAYRYALQELNPFVIDGANYDALNEDGSLNLLNPQNPQQDPQGMSEQYLTDRATMLLLQLKYLQNGLKLGRDLSSYGVEGDWDYLDYGKHPFAGEPDSPLVFSIDGNGISTDDHIIAFGTKGNDTFEGSDESDRFYGGAGDDTFTSSKGDDYMEGGVGNDVYHIKGKDTVFDSDMSGQIVFDGLSQSPSLFEKTGKNSWAALDAGHITATRNDKDLLIQNNDDSVLIKGYFSTAKHIDNMLWSGFGFNLIENTVHHTYKVNNGLINSFQIRPNPADNETIAVIGNKRGDIVMPFSAKSVIVDSGDGKDTIYGSVKGGNIILGGKDHDILHGANHSPGTRDKNTDVLTDVIVGGEGHDLIDGMGGKDIIHTGEIDEHLDKKSSNEKGDWAVGHLGDDEIYGSRGHDFLQGGSGNDTMFGGAGHDVMVGDGDVQFNSKWKYIGATSSSTAVSPTAMGFEMTEIAGSRLGVEHNVKDKGAVTRKIMERVSLHDDAMHQWEVQINDEKGDYELTNALIRRNTHVVEENSQSSYDDTLHGGSGNDLIIGQRGNDELFGDDGHDILWGDDNRDNQIIGNDKLYGGKGNDTLYGGAGNDFLSGGEGTNELYGGDGFDTYQMLSNESQHQIINDSDKQGEMIVDGLNLGRLSWKFDAETQKWAADFGTDITVKQTDGSLQIFNGSNNEIATIEQFTNGTFGIQLENQAPKVKERVNAGSAVSNQAFVHHLGDNLFADEDQESLNYTVTLADGSPLPAWLNFNAGAMTLSGTPTKDHVGSISLKITATDKEGLSNHQTWAFQVEPPPNEAPKLKTNPLAVSSVQENGSQVFSLADWFEDDKAFSQLNFNLAMADGSALPSWLNQQNGSVSVAPDFDAAGTYHLSLSAQDEEGLSSPVMNWQINVANVNRAPTVSGNLDTQTLEFGKDWRLQLPELFKDGDKGDTLSYRLEMADGSALPQWLHFNAQSQTLSGTPDVAGSLNLKLTATDTNQASVATHINLQVNPKPINPKPEQPTEQPEDGASTTPPVKPNTTDSFGNDKLEGSDKNDVMKGGFGNNTLNGGNGNDTLDGSFGDDILNGGNGDDTLDGGFGNDTLNGGSGNDTLDGSFGNDILRGSNGNDTLEGGFGDDSLNGGNGHDTLEGGFGNDTLNGGNGNDKLDGGFGDDVLIGGKGNDKLSGGFGNDTYIFNLGDGHDTIQESFGQDKLKINGLRLSDVLFVNEGRNLIIDSKISDDRITLENHYFFGSNNPRMTNSASNSDKVDVFEFADGRSLSYEQVERLAQPFDYLNNPNPY
SIO_010081: H3L98_RS00010
subclass of: SO_0000673
so part of: H3L98_RS00010
location: complement(1284..7043)
location: region:1284-7043:-1
so has part: feature:1284-7043:-1:exon

WP_182078411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1284-7043:-1:exon

H3L98_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00015
old locus tag: H3L98_00015
so part of: sequence
location: complement(7140..7856)
location: region:7140-7856:-1
so has part: feature:7140-7856:-1:exon
subclass of: SO_0000010

position:7140:-1
position: 7140
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7856:-1
position: 7856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7140-7856:-1:exon

H3L98_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00015
old locus tag: H3L98_00015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQVYVCQFALDRVQQYDIKASVKGSGLMYPEIRGILGIGLEPETLEVQEKKEKYFPFSLELSDTNHFFIQSKAIPDALWAGIYQNEAIKLPTREDYIFSIWNGGILFNPSCAAILKQHRLGENILTPVQIYDLSTGCLASDETYYFLNLYERREYICETQSNTKLQATPTQYGVMSFSGYIRNQEVDVYQSALSCDVDLWYDPRFIGRFFMSANLHDALSEAGMIDKFKPYTCNLV
SIO_010081: H3L98_RS00015
subclass of: SO_0000673
so part of: H3L98_RS00015
location: complement(7140..7856)
location: region:7140-7856:-1
so has part: feature:7140-7856:-1:exon

WP_156932329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7140-7856:-1:exon

H3L98_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00020
old locus tag: H3L98_00020
so part of: sequence
location: complement(7924..8658)
location: region:7924-8658:-1
so has part: feature:7924-8658:-1:exon
subclass of: SO_0000010

position:7924:-1
position: 7924
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8658:-1
position: 8658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7924-8658:-1:exon

H3L98_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00020
old locus tag: H3L98_00020
inference: COORDINATES: protein motif:HMM:NF025446.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4261 domain-containing protein
translation: MLENGFVLLNSHEFNIHQLINDLETDWGISAQAERHQDSFILNIGDFLCVLGLMPAPVPNGEAAHYAKGNYYCPDAVAAAEAHQAHLMVTVMNQAENTEVLGMNLYSKIVSSCLKPQNATAVYTSGTVYTADFYRKVAQQYLPNNEIPIMIWVYIGLGQNQQGNQLYTSGMAKFGKDEMEILNSPMDMGRLHASLSSMCAYIISSGLVLKDGESIGFSAEQKWQISHSKSVYAPSEFSLKIDIQ
SIO_010081: H3L98_RS00020
subclass of: SO_0000673
so part of: H3L98_RS00020
location: complement(7924..8658)
location: region:7924-8658:-1
so has part: feature:7924-8658:-1:exon

WP_182078412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7924-8658:-1:exon

H3L98_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
gene: mobV
locus tag: H3L98_RS00025
old locus tag: H3L98_00025
so part of: sequence
location: complement(9477..10673)
location: region:9477-10673:-1
so has part: feature:9477-10673:-1:exon
subclass of: SO_0000010

position:9477:-1
position: 9477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10673:-1
position: 10673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9477-10673:-1:exon

H3L98_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
gene: mobV
locus tag: H3L98_RS00025
old locus tag: H3L98_00025
inference: COORDINATES: protein motif:HMM:NF013258.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobV family relaxase
translation: MSHYAILRIAKHKTAQNLASSLKHNFREIPTHNANADITPNNGHFSREFATLVNRHYDCIDTTHKAMDWFNQRLAQIAANGKIRSNAVLAVEYLLTASPEWWAQSTSAQRNEWRKRTVNFLVQKHGAENIIAATYQVDETTPHISAFVIPEYQGKLNARHFFGGRKNLSELQTDYAAQVADLGLSRGIENSKATHKTIKQYYSEVNQVLNGNLPVQELYQEIHQKIRIPKKGIWENHDEYQHKIYNLVGQSVYEMLAPKYAYFPKVNTALKQKQRELAQLDKQKNDFLQQYRRQVDEEVLSRTQELSRNLNNARWENQKLFNEINGKNEMIAEQKQILTEQEWEIKRLSAEVAEQERIIAEHKQAFDDLFEKLKATQIELNRYKEKYEPQQKTFGMDF
SIO_010081: H3L98_RS00025
subclass of: SO_0000673
so part of: H3L98_RS00025
location: complement(9477..10673)
location: region:9477-10673:-1
so has part: feature:9477-10673:-1:exon

WP_182078413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9477-10673:-1:exon

H3L98_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00030
old locus tag: H3L98_00030
so part of: sequence
location: 11025..11339
location: region:11025-11339:1
so has part: feature:11025-11339:1:exon
subclass of: SO_0000010

position:11025:1
position: 11025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11339:1
position: 11339
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11025-11339:1:exon

H3L98_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00030
old locus tag: H3L98_00030
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDFFIHTIRIILLTKTILKVKQIDFFRQRKRFGKFKQIDFFIHTIRIILPMEMILKVKKIDLFSHSIRIEITNKKKNFSNKNCLIFAPFKPRCQPLTLGVSSAP
SIO_010081: H3L98_RS00030
subclass of: SO_0000673
so part of: H3L98_RS00030
location: 11025..11339
location: region:11025-11339:1
so has part: feature:11025-11339:1:exon

WP_182078414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11025-11339:1:exon

H3L98_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00035
old locus tag: H3L98_00035
so part of: sequence
location: complement(11547..11822)
location: region:11547-11822:-1
so has part: feature:11547-11822:-1:exon
subclass of: SO_0000010

position:11547:-1
position: 11547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11822:-1
position: 11822
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11547-11822:-1:exon

H3L98_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00035
old locus tag: H3L98_00035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003707782.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MTAKYELAPTNQFKRDIKKRWAELLDSDWVTVANCLINDVELPIKYRDHELKGNHAGIRECHIKPDLLLMYEKQEQQIILIRIGTHSELFG
SIO_010081: H3L98_RS00035
subclass of: SO_0000673
so part of: H3L98_RS00035
location: complement(11547..11822)
location: region:11547-11822:-1
so has part: feature:11547-11822:-1:exon

WP_182078408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11547-11822:-1:exon

H3L98_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00040
old locus tag: H3L98_00040
so part of: sequence
location: complement(11832..12113)
location: region:11832-12113:-1
so has part: feature:11832-12113:-1:exon
subclass of: SO_0000010

position:11832:-1
position: 11832
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12113:-1
position: 12113
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11832-12113:-1:exon

H3L98_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00040
old locus tag: H3L98_00040
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013449050.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MPSINYNIRLEQDLRNRAFAVFESYGLSPSQAIKLFLTQVADTHTIPLSFEHKANQEKIPNMATLAAIQEAKAGNLKGYASLDAMMDEIKQCD
SIO_010081: H3L98_RS00040
subclass of: SO_0000673
so part of: H3L98_RS00040
location: complement(11832..12113)
location: region:11832-12113:-1
so has part: feature:11832-12113:-1:exon

WP_182078415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11832-12113:-1:exon

H3L98_RS10850
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS10850
so part of: sequence
location: 12848..13252
location: region:12848-13252:1
so has part: feature:12848-13252:1:exon
subclass of: SO_0000010

position:12848:1
position: 12848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13252:1
position: 13252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12848-13252:1:exon

H3L98_RS10850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS10850
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RepB family plasmid replication initiator protein
translation: MSKNLVVKDNALINASYNLELVEQRLILLSIIEARATGKGITPNDKLTITASSYMNNFGTNRNTAYQALKDACNNLFERQFSFIEETEKGNKVVRTRWVSQVAYLENEAIVELIFSPAVAPLITMLEKTSQVMN
SIO_010081: H3L98_RS10850
subclass of: SO_0000673
so part of: H3L98_RS10850
location: 12848..13252
location: region:12848-13252:1
so has part: feature:12848-13252:1:exon

WP_246327790.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12848-13252:1:exon

H3L98_RS10860
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS10860
so part of: sequence
location: 13497..13949
location: region:13497-13949:1
so has part: feature:13497-13949:1:exon
subclass of: SO_0000010

position:13497:1
position: 13497
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13949:1
position: 13949
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13497-13949:1:exon

H3L98_RS10860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS10860
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGFTFTITQKASQSESAQPKKTKTAPQPDWFAEFSEEERTAIQERIADHIARLEASGEIVSDFHRQNITQKAVAERWGLDVLEQKKKKKQKDDKKKASEQAWQNIPDGTRFRSTKDGSIWRKDVGSLVDEYNRFVPEFMIVDFLQYLEEI
SIO_010081: H3L98_RS10860
subclass of: SO_0000673
so part of: H3L98_RS10860
location: 13497..13949
location: region:13497-13949:1
so has part: feature:13497-13949:1:exon

WP_246327789.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13497-13949:1:exon

H3L98_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00050
old locus tag: H3L98_00050
so part of: sequence
location: complement(14004..18299)
location: region:14004-18299:-1
so has part: feature:14004-18299:-1:exon
subclass of: SO_0000010

position:14004:-1
position: 14004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18299:-1
position: 18299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14004-18299:-1:exon

H3L98_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00050
old locus tag: H3L98_00050
inference: COORDINATES: protein motif:HMM:NF017183.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative Ig domain-containing protein
translation: MSGVATAKAVESAPAEEQKQVLVDIALSEVVSEVASQAAEFGMKSLISAAVGTGLVMVPGPVAAVATLFVGIVAGMYGEDIYELTKDLDKNGRMDFVDRMSTLMFGQDIKPNQIPEVLSRQLANNFKTQKVELSAEMSVQELVAKAKENIAYRYALQELNPFVIDGANYDALNEDGSLNLLNPQNPQQDPQGMSEQYLTDRATMLLLQLKYLQNGLKLGRDLSSYGVEGDWDYLDYGKHPFAGEPDSPLVFSIDGNGISTDDHIIAFGTKGNDTFEGSDESDRFYGGAGDDTFTSSKGDDYMEGGVGNDVYHIKGKDTVFDSDMSGQIVFDGLSQSPSLFEKTGKNSWAALDAGHITATRNDKDLLIQNNDDSVLIKGYFSTAKHIDNMLWSGFGFNLIENTVHHTYKVNNGLINSFQIRPNPADNETIAVIGNKRGDIVMPFSAKSVIVDSGDGKDTIYGSVKGGNIILGGKDHDILHGANHSPGTRDKNTDVLTDVIVGGEGHDLIDGMGGKDIIHTGEIDEHLDKKSSNEKGDWAVGHLGDDEIYGSRGHDFLQGGSGNDTMFGGAGHDVMVGDGDVQFNSKWKYIGATSSSTAVSPTAMGFEMTEIAGSRLGVEHNVKDKGAVTRKIMERVSLHDDAMHQWEVQINDEKGDYELTNALIRRNTHVVEENSQSSYDDTLHGGSGNDLIIGQRGNDELFGDDGHDILWGDDNRDNQIIGNDKLYGGKGNDTLYGGAGNDFLSGGEGTNELYGGDGFDTYQMLSNESQHQIINDSDKQGEMIVDGLNLGRLSWKFDAETQKWAADFGTDITVKQTDGSLQIFNGSNNEIATIEQFTNGTFGIQLENQAPKVKERVNAGSAVSNQAFVHHLGDNLFADEDQESLNYTVTLADGSPLPAWLNFNAGAMTLSGTPTKDHVGSISLKITATDKEGLSNHQTWAFQVEPPPNEAPKLKTNPLAVSSVQENGSQVFSLADWFEDDKAFSQLNFNLAMADGSALPSWLNQQNGSVSVAPDFDAAGTYHLSLSAQDEEGLSSPVMNWQINVANVNRAPTVSGNLDTQTLEFGKDWRLQLPELFKDGDKGDTLSYRLEMADGSALPQWLHFNAQSQTLSGTPDVAGSLNLKLTATDTNQASVATHINLQVNPKPINPKPEQPTEQPEDGASTTPPVKPNTTDSFGNDKLEGSDKNDVMKGGFGNNTLNGGNGNDTLDGSFGDDILNGGNGDDTLDGGFGNDTLNGGSGNDTLDGSFGNDILRGSNGNDTLEGGFGDDSLNGGNGHDTLEGGFGNDTLNGGNGNDKLDGGFGDDVLIGGKGNDKLSGGFGNDTYIFNLGDGHDTIQESFGQDKLKINGLRLSDVLFVNEGRNLIIDSKISDDRITLENHYLFANNPRMTNSASNSDKVDVFEFADGRSLSYEQVERLAQPFDYLNNPNPY
SIO_010081: H3L98_RS00050
subclass of: SO_0000673
so part of: H3L98_RS00050
location: complement(14004..18299)
location: region:14004-18299:-1
so has part: feature:14004-18299:-1:exon

WP_182078403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14004-18299:-1:exon

H3L98_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00055
old locus tag: H3L98_00055
so part of: sequence
location: complement(18914..19858)
location: region:18914-19858:-1
so has part: feature:18914-19858:-1:exon
subclass of: SO_0000010

position:18914:-1
position: 18914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19858:-1
position: 19858
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18914-19858:-1:exon

H3L98_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00055
old locus tag: H3L98_00055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MANSEKVPQQAHHIIPEAVFDRMIGDFIAVFGRDSGAVFKQLGGNFIYLHNDNQAAERAQRLLSNNKDLFGDLSFGGAWHHGSHPSYDNVVRTRLERIFEGTFSPNPDKNNEIKQMMILDLQRGLKEILIDGVPNVMQANQFDAEAMQNALDGKGIYSPNNPDDTIARRLLNDFNADLHKPDTERFLTRKFGDTGTTKIAEFTGTKLVERVGKLNKVTQFISDTGQPKFKEIFEKTLKEGLKKGELIDATKARQLIYHTTYDVERFLTAADVFKDANGQSTFNSESLNSFLDKFKEAVNHSLTDGKDPSKILEI
SIO_010081: H3L98_RS00055
subclass of: SO_0000673
so part of: H3L98_RS00055
location: complement(18914..19858)
location: region:18914-19858:-1
so has part: feature:18914-19858:-1:exon

WP_182078404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18914-19858:-1:exon

H3L98_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00060
old locus tag: H3L98_00060
so part of: sequence
location: complement(19886..20329)
location: region:19886-20329:-1
so has part: feature:19886-20329:-1:exon
subclass of: SO_0000010

position:19886:-1
position: 19886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20329:-1
position: 20329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19886-20329:-1:exon

H3L98_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00060
old locus tag: H3L98_00060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPTREDYIFSIWSGGILFNPSCAAILKQHRLGENILTPVQIYDLSTGCLASDETYYFLNLYERRKYVCYPQSSSIFTYLQSSEKYTTNGIPIKDNRLEVDKSVLGCDVDLWYDPRLGSHFFMSANLHHALSQAGMIDKFNPYTCNLI
SIO_010081: H3L98_RS00060
subclass of: SO_0000673
so part of: H3L98_RS00060
location: complement(19886..20329)
location: region:19886-20329:-1
so has part: feature:19886-20329:-1:exon

WP_220458623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19886-20329:-1:exon

H3L98_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00065
old locus tag: H3L98_00065
so part of: sequence
location: complement(20668..21402)
location: region:20668-21402:-1
so has part: feature:20668-21402:-1:exon
subclass of: SO_0000010

position:20668:-1
position: 20668
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21402:-1
position: 21402
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20668-21402:-1:exon

H3L98_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00065
old locus tag: H3L98_00065
inference: COORDINATES: protein motif:HMM:NF025446.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4261 domain-containing protein
translation: MLENGFVLLNSHEFNIHQLINDLETDWGISAQAERHQDSFILNIGDFLCVLGLMPAPVPNGEAAHYAKGNYYCPDAVAAAEAHQAHLMVTVMNQAENTEVLGMNLYSKIVSSCLKPQNATAVYTSGTVYTADFYRKVAQQYLPNNEIPIMIWVYIGLGQNQQGNQLYTSGMAKFGKDEMEILNSPMDMGKLHASLSSMCAYIISSGLVLKDGESIGFSAEQKWQISHSKSVYAPSEFSLKIDIQ
SIO_010081: H3L98_RS00065
subclass of: SO_0000673
so part of: H3L98_RS00065
location: complement(20668..21402)
location: region:20668-21402:-1
so has part: feature:20668-21402:-1:exon

WP_182078406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20668-21402:-1:exon

H3L98_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
gene: mobV
locus tag: H3L98_RS00070
old locus tag: H3L98_00070
so part of: sequence
location: complement(22125..23321)
location: region:22125-23321:-1
so has part: feature:22125-23321:-1:exon
subclass of: SO_0000010

position:22125:-1
position: 22125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23321:-1
position: 23321
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22125-23321:-1:exon

H3L98_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
gene: mobV
locus tag: H3L98_RS00070
old locus tag: H3L98_00070
inference: COORDINATES: protein motif:HMM:NF013258.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobV family relaxase
translation: MSHYAILRIAKHKTAQNLASSLKHNFREIPTHNANADITPNNGHFSREFATLVNRHYDCIDTTHKAMDWFNQRLVQIAANGKIRSNAVLAVEYLLTASPEWWAQSTSAQRNEWRKRTVDFLVQKHGAENIIAATYQVDETTPHISAFVIPEYQGKLNARHFFGGRKNLSELQTDYAAQVADLGLSRGIENSKATHKTIKQYYSEVNQVLNGNLPVQELYQEIHQKIRIPKKGIWENHDEYQHKIYNLVGQSVYEMLAPKYAYFPKVNRALKQKQRELAQLDKQKNDFLQQYRRQVDEEVLSRTQELSRNLNNARWENQKLFNEINGKNEMIAEQKQILTEQEWEIKRLSAEVAEQERIIAEHKQAFDDLFEKLKATQIELNRYKEKYEPQQKTFGMDF
SIO_010081: H3L98_RS00070
subclass of: SO_0000673
so part of: H3L98_RS00070
location: complement(22125..23321)
location: region:22125-23321:-1
so has part: feature:22125-23321:-1:exon

WP_182078407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22125-23321:-1:exon

H3L98_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00075
old locus tag: H3L98_00075
so part of: sequence
location: complement(24443..24718)
location: region:24443-24718:-1
so has part: feature:24443-24718:-1:exon
subclass of: SO_0000010

position:24443:-1
position: 24443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24718:-1
position: 24718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24443-24718:-1:exon

H3L98_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00075
old locus tag: H3L98_00075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003707782.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MTAKYELAPTNQFKRDIKKRWAELLDSDWVTVANCLINDVELPIKYRDHELKGNHAGIRECHIKPDLLLMYEKQEQQIILIRIGTHSELFG
SIO_010081: H3L98_RS00075
subclass of: SO_0000673
so part of: H3L98_RS00075
location: complement(24443..24718)
location: region:24443-24718:-1
so has part: feature:24443-24718:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24443-24718:-1:exon

H3L98_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 153493
locus tag: H3L98_RS00080
old locus tag: H3L98_00080
so part of: sequence
location: complement(24728..25009)
location: region:24728-25009:-1
so has part: feature:24728-25009:-1:exon
subclass of: SO_0000010

position:24728:-1
position: 24728
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25009:-1
position: 25009
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24728-25009:-1:exon

H3L98_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 153493
locus tag: H3L98_RS00080
old locus tag: H3L98_00080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013449050.1
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MPSINYNIRLEQDLRNRAFAVFESYGLSPSQAIKLFLTQVADTHTIPLSFEHKANQEKIPNMATLAAIQEAKAGNLKGYASLDAMMDEIKQSD
SIO_010081: H3L98_RS00080
subclass of: SO_0000673
so part of: H3L98_RS00080
location: complement(24728..25009)
location: region:24728-25009:-1
so has part: feature:24728-25009:-1:exon

WP_182078409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24728-25009:-1:exon