Parageobacillus toebii strain NEB718 plasmid pBsaW11_718, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Parageobacillus.
Complete genomes and methylomes of original NEB strains producers of restriction endonucleases
Submitted (17-FEB-2021) Genome Biology, NEB, 240 County Rd, Ipswich, MA 01938, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP070513.1.\nBacteria and source DNA available from NEB718.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 29-NOV-2017\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: BsaW_718HGAP3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 142.24x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 03:43:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,604\nCDSs (total) :: 3,479\nGenes (coding) :: 3,345\nCDSs (with protein) :: 3,345\nGenes (RNA) :: 125\nrRNAs :: 8, 9, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 9, 10 (5S, 16S, 23S)\ntRNAs :: 92\nncRNAs :: 6\nPseudo Genes (total) :: 134\nCDSs (without protein) :: 134\nPseudo Genes (ambiguous residues) :: 0 of 134\nPseudo Genes (frameshifted) :: 63 of 134\nPseudo Genes (incomplete) :: 93 of 134\nPseudo Genes (internal stop) :: 25 of 134\nPseudo Genes (multiple problems) :: 41 of 134\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF024803.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015434123.1
COORDINATES: similar to AA sequence:RefSeq:WP_017043231.1
COORDINATES: similar to AA sequence:RefSeq:WP_005826969.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012745162.1