Paracoccus tegillarcae strain BM15 plasmid pBM153, complete sequence.
type: Entry
definition: Paracoccus tegillarcae strain BM15 plasmid pBM153, complete sequence.
sequence version: NZ_CP025411.1
sequence date: 2023-04-06
sequence: sequence
division: CON
label: NZ_CP025411.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08010293
keyword: RefSeq
source: Paracoccus tegillarcae
organism: Paracoccus tegillarcae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP025411.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 09-NOV-2017\nAssembly Method :: RS HGAP Assembly v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 290.0x\nSequencing Technology :: PacBio; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/06/2023 01:20:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,933\nCDSs (total) :: 3,878\nGenes (coding) :: 3,812\nCDSs (with protein) :: 3,812\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 3\nPseudo Genes (total) :: 66\nCDSs (without protein) :: 66\nPseudo Genes (ambiguous residues) :: 0 of 66\nPseudo Genes (frameshifted) :: 22 of 66\nPseudo Genes (incomplete) :: 42 of 66\nPseudo Genes (internal stop) :: 13 of 66\nPseudo Genes (multiple problems) :: 10 of 66\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 20460
topology: circular
so has quality: SO_0000988
location: 1..20460
location: region:1-20460:1
RO_0002162: 1529068

NZ_CP025411
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08010293
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Lee, J.-Y.
journal: Submitted (13-DEC-2017) Dept. of Biology, Kyung Hee University, 1 Hoegi-Dong, Dongdaemun-Gu, Seoul 02447, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20460:1
position: 20460
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-20460:1:source
so part of: sequence
organism: Paracoccus tegillarcae
mol type: genomic DNA
strain: BM15
host: Tegillarca granosa
type material: type material of Paracoccus tegillarcae
plasmid: pBM153
country: South Korea
collection date: 2015-03-01

1529068
type: Taxonomy
SIO_000068: taxonomy

CUV01_RS19455
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19455
old locus tag: CUV01_19450
so part of: sequence
location: complement(join(20100..20460,1..866))
location: region:1-20460:-1
so has part: feature:1-866:-1:exon
so has part: feature:20100-20460:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20460:-1
position: 20460
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-866:-1:exon

position:866:-1
position: 866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:20100-20460:-1:exon

position:20100:-1
position: 20100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

CUV01_RS19455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19455
old locus tag: CUV01_19450
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO process: GO:0009307 - DNA restriction-modification system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: type II restriction endonuclease
translation: MIKRGQLSDYFEGVGVKRLSAVDAEPKTSNQHEVGTTKKMRDDFLGENHQERFPAIYIWLGGDQEGFTEESWATHYDARLNKPRAAEWRLYYPSNPVTEAMKAGDTLFLAKDQGGVLWFIVAPEGSTSEQQLFWLFGLRPEGKSFVSREFSDEEPELDFAARFILDEIGVEFEEPEADKLDSIIDRFGTTFPKTAEFSDLARLTLPEVRAEDDPDAALIAWLDHEEALFRRLERRVVSSRIEAGFTSADGTDVDGFISFSLSVQNRRKSRMGHSLENHMAAVLRAHDIRHVRGAITEHKHKPDFLFPDLETYQAAPAGGDARLTMLGAKSTCKDRWRQVLAEAEKISRKHLLTLEPGISEPQTGQMEASGLQLVIPSPVHGSYTDAQRGWLWSVGDFIGEVRARQGQL
SIO_010081: CUV01_RS19455
subclass of: SO_0000673
so part of: CUV01_RS19455
location: complement(join(20100..20460,1..866))
location: region:1-20460:-1
so has part: feature:1-866:-1:exon
so has part: feature:20100-20460:-1:exon

WP_232962811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-866:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:20100-20460:-1:exon

CUV01_RS19460
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19460
old locus tag: CUV01_19455
so part of: sequence
location: complement(841..1314)
location: region:841-1314:-1
so has part: feature:841-1314:-1:exon
subclass of: SO_0000010

position:841:-1
position: 841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1314:-1
position: 1314
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:841-1314:-1:exon

CUV01_RS19460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19460
old locus tag: CUV01_19455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013478979.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: very short patch repair endonuclease
translation: MPADIVSTSVRSRMMAAVKGKNTKPELAIRSALHGRGFRFRLHRKDLPGRPDLVFTCRNAVIFVHGCFWHGHDCHLFRWPKSRQDFWREKIGSNIERDRHQCEALAEAGWRIGIVWECALKGKTRLPFDSVVDQCAMWLKSDIKTLEVSGDKTRATV
SIO_010081: CUV01_RS19460
subclass of: SO_0000673
so part of: CUV01_RS19460
location: complement(841..1314)
location: region:841-1314:-1
so has part: feature:841-1314:-1:exon

WP_101462395.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:841-1314:-1:exon

CUV01_RS19465
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
gene: dcm
locus tag: CUV01_RS19465
old locus tag: CUV01_19460
so part of: sequence
location: complement(1314..2660)
location: region:1314-2660:-1
so has part: feature:1314-2660:-1:exon
subclass of: SO_0000010

position:2660:-1
position: 2660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1314-2660:-1:exon

CUV01_RS19465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
gene: dcm
locus tag: CUV01_RS19465
old locus tag: CUV01_19460
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011930845.1
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA (cytosine-5-)-methyltransferase
translation: MNAHPRTEFAELMERAGLDIDTAAELLGVSDRTIRRNMKGEGKRIDQLRLEKLRQTADARCTGERPTGFRFIDLFAGIGGLRLPFEAIGGRCVFTAEWDRFSRETYSANFPEPADSEHVFAEDVRPYADAPETIPDHDVLLAGFPCQPFSIAGVSKKNALGRPHGFLCDTQGTLFYDLAKIIDHHRPPAFLLENVKNLERHDGGKTFATIIHVLEKELGYRVFHKVISSTPWVPQKRERIFIVGFKDHSIEFDFDQLAVPEGDGPTLGTILDKTVDPKYTLTEHMWTYLQGYKEKHRSAGNGFGFSLFGPNDVARTLSARYYKDGSEILIEQKGNRPRRLTPRECARLMGFEKPRQTEWKIPVSDTQAYRQFGNAVVVPVVNAVAQLMQTRIAEAMELDGREVPNPVQAMLPLAETQPPARLARRTADIPQEEGEPLVAELERMIAAD
SIO_010081: CUV01_RS19465
subclass of: SO_0000673
so part of: CUV01_RS19465
location: complement(1314..2660)
location: region:1314-2660:-1
so has part: feature:1314-2660:-1:exon

WP_101462396.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1314-2660:-1:exon

CUV01_RS19470
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19470
old locus tag: CUV01_19465
so part of: sequence
location: complement(2802..3521)
location: region:2802-3521:-1
so has part: feature:2802-3521:-1:exon
subclass of: SO_0000010

position:2802:-1
position: 2802
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3521:-1
position: 3521
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2802-3521:-1:exon

CUV01_RS19470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19470
old locus tag: CUV01_19465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKQMRDYADERHKGWCIHCNAGLKNVESNLDHVPSKTILDRPFPNDLPTVRICKSCNTSFSNDEEYFTAFLGSVLAGSADPDQQVVARSEKILDSNYRLQDEIESQLQIVKDEDGNDRITFVPDMARIQNVVVKNARGHVLFEHGQPAEGEPARVAIQPIPTLSPDMLANFETIDYGAGWPEVGSRLMQRLVSGEDMRPDGWVVVQPDVYRFAVMDQGQFVVRTVIREYLATEVVWDHI
SIO_010081: CUV01_RS19470
subclass of: SO_0000673
so part of: CUV01_RS19470
location: complement(2802..3521)
location: region:2802-3521:-1
so has part: feature:2802-3521:-1:exon

WP_101462397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2802-3521:-1:exon

CUV01_RS19475
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19475
old locus tag: CUV01_19470
so part of: sequence
location: complement(3551..4090)
location: region:3551-4090:-1
so has part: feature:3551-4090:-1:exon
subclass of: SO_0000010

position:3551:-1
position: 3551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4090:-1
position: 4090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3551-4090:-1:exon

CUV01_RS19475
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19475
old locus tag: CUV01_19470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655531.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIIGYARVSTDDQSLDAQTDALTAAGANKLFADRISGSKRERPELDRMLDQLRDGDIVTVTKYDRLARSLKDLLEIVDTIRERGAGFRSLAEDIDTTTPAGRLVFHVFASIAQFERERISERTKEGLASARKRGRIGGRPPALSPAQKNEVRRMRDDEHRAVQEIARLFKVSERTVRRA
SIO_010081: CUV01_RS19475
subclass of: SO_0000673
so part of: CUV01_RS19475
location: complement(3551..4090)
location: region:3551-4090:-1
so has part: feature:3551-4090:-1:exon

WP_101462398.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3551-4090:-1:exon

CUV01_RS19480
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19480
old locus tag: CUV01_19475
so part of: sequence
location: 4179..5258
location: region:4179-5258:1
so has part: feature:4179-5258:1:exon
subclass of: SO_0000010

position:4179:1
position: 4179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5258:1
position: 5258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4179-5258:1:exon

CUV01_RS19480
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19480
old locus tag: CUV01_19475
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007165839.1
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
translation: MEDGPEPEPLGEVVDLFCGVGSLSHGLMRAGFDIRAGYDTDRRCQHAFETNNEATFHTRDVALLQPEEILAHFSGERPSVLAGCAPCQPFSTYKQRYDEDPRWDLVDSFARLAVKVSPDFITMENVPALLKYKAGAVFSKFSQTLQNAGYHVSWQVAKCELFGVPQKRRRLVVVASKAANPPQLSPTHQTPLTVKDAIANLPPVAAGTRAENDPLHISASLSETNLRRIRASQPGGTWRDWPYELRAKCHQRSSGKTYSGVYARMVWDAPSPTMTTQCYGYGNGRFGHPEQDRAITLREAALLQSFPPQYSFLPDGEAPNMSEVGRWIGNAVPVGLAQAIGRCIGSVIEENEFGSKEIT
SIO_010081: CUV01_RS19480
subclass of: SO_0000673
so part of: CUV01_RS19480
location: 4179..5258
location: region:4179-5258:1
so has part: feature:4179-5258:1:exon

WP_101462399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4179-5258:1:exon

CUV01_RS19485
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19485
old locus tag: CUV01_19480
so part of: sequence
location: 5236..6894
location: region:5236-6894:1
so has part: feature:5236-6894:1:exon
subclass of: SO_0000010

position:5236:1
position: 5236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6894:1
position: 6894
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5236-6894:1:exon

CUV01_RS19485
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19485
old locus tag: CUV01_19480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019967832.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MAAKKSPDPYRFEISLSVLNHLGRNLYRNFVTVLGEAISNSWDANAKNVWIEIDRENSSFSIKDDGDGMDSGDFQGKFLKIGYSKRKSGGSKSSTGRPYIGAKGIGKLALLSCAKRVSVFSKTGGTDYVGGVIDNAGLDGAILGDRSTEEYPLEQLDFSLISELREGHRKGTIIYFEGTNDQLKNSDAYIKKLLALSFKFSLLDEEFTIHVSGDPVTVDDLKPLSDATQFLWSVNGYTDAYIDGLNNLELPVSEVTTPLDIKGFVASVKKPANLKITGTDERATIDLFVNGRLREKNIIRHIPSQRIVESYIYGQIHFDTLDREGTDPFTSSREGIVEDDEKFRSLMDYLKRDLLTKIIDEWDKFRLEVKDEGDDDNTRKSKRDRKAQALVSEAKKDFQPDDDAPTKDIVEEWLTEMQADAEFNTSAYVDCFLSENLVRKYIGHKNLSPIDGIQKEIVKFKEREEKTKQAANISFPIRQISLDLSYLDMDALAFTAEGSKNTNTQSLWGDAIGFKPVRNAVGHTGRLTNVAKNHLNTTFENIKARVRTLLSN
SIO_010081: CUV01_RS19485
subclass of: SO_0000673
so part of: CUV01_RS19485
location: 5236..6894
location: region:5236-6894:1
so has part: feature:5236-6894:1:exon

WP_101462400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5236-6894:1:exon

CUV01_RS19490
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19490
old locus tag: CUV01_19485
so part of: sequence
location: complement(7104..7940)
location: region:7104-7940:-1
so has part: feature:7104-7940:-1:exon
subclass of: SO_0000010

position:7104:-1
position: 7104
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7940:-1
position: 7940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7104-7940:-1:exon

CUV01_RS19490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19490
old locus tag: CUV01_19485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009807500.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]; GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO process: GO:0006812 - monoatomic cation transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation diffusion facilitator family transporter
translation: MSTPETGAQTAPIRMRVQGMDCAKDVAEIERAARSAGVSAEDVKVSAATHIITLRIAENYLPKVRLALESTGYGFERIEGDDVSADPGYKDPSYRWALWIVVVLNLGYGVVEMAGGFLSGSQALKADALDFLGDGAITFLGLLAIGWSLTWRARSAMIQGLFLGLLGLGVVASTLWRVLNQATPEAGLMSAFAMGALIVNILAVLPLLKHRKGDANMRAVWLFSRNDAIGNFAVVVAAGLVAWFGSAWPDLIVAFGIAALFLHSSWTIIRDARADLRE
SIO_010081: CUV01_RS19490
subclass of: SO_0000673
so part of: CUV01_RS19490
location: complement(7104..7940)
location: region:7104-7940:-1
so has part: feature:7104-7940:-1:exon

WP_101462401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7104-7940:-1:exon

CUV01_RS19495
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19495
old locus tag: CUV01_19490
so part of: sequence
location: complement(7950..8885)
location: region:7950-8885:-1
so has part: feature:7950-8885:-1:exon
subclass of: SO_0000010

position:7950:-1
position: 7950
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8885:-1
position: 8885
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7950-8885:-1:exon

CUV01_RS19495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19495
old locus tag: CUV01_19490
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007120098.1
GO component: GO:0016020 - membrane [Evidence IEA]
GO function: GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]; GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO process: GO:0006812 - monoatomic cation transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: cation diffusion facilitator family transporter
translation: MAVGHDHGDGHSHGPTLSKDAPEEERRSKERAIAIAAILTGGFMGAEVVGGLISGSLALLADAGHMLTDFASLILAWLAFRLARKPADWKRTYGFDRFSVLAAFVNGLSLFAIAIWIVVEAFHRLRDPSEVLGGLMLWVAVGGLIVNILAFWVLSRAEGDNLNVRAAALHVMGDLLGSVAAIVASLVIIWTGWTPIDPILSVFVVLLILRSAWSVVRESGHILLEGAPRGFDTRAIASDLAANIAGVARAHHIHAWSITQERPMATLEVDIESGANAQEVRLEVKKRVQELTGVEHVTVEIADGDARSDHG
SIO_010081: CUV01_RS19495
subclass of: SO_0000673
so part of: CUV01_RS19495
location: complement(7950..8885)
location: region:7950-8885:-1
so has part: feature:7950-8885:-1:exon

WP_101462402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7950-8885:-1:exon

CUV01_RS19500
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19500
old locus tag: CUV01_19495
so part of: sequence
location: complement(8965..9564)
location: region:8965-9564:-1
so has part: feature:8965-9564:-1:exon
subclass of: SO_0000010

position:8965:-1
position: 8965
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9564:-1
position: 9564
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8965-9564:-1:exon

CUV01_RS19500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19500
old locus tag: CUV01_19495
EC number: 2.1.1.100
EC number: 2.1.1.334
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009820243.1
GO function: GO:0008168 - methyltransferase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: isoprenylcysteine carboxylmethyltransferase family protein
translation: MSFYVGAVTIAALICAAFLAAILIWSILFPSHRLWPTGRVTVFTQAMVWTPTVVIFVAAPIVGIIEWNALDWFDWLRFGVGVPLIVGGNIIVWRGVFGIGMDATSGARGQLKTDGLYRYTRNPQYLADMGILTGWAVLSASPSAWIIAASGVAALALAPFAEEPWLEEIYGDPYRRYCKSAPRFLGVPGYLTENGGESR
SIO_010081: CUV01_RS19500
subclass of: SO_0000673
so part of: CUV01_RS19500
location: complement(8965..9564)
location: region:8965-9564:-1
so has part: feature:8965-9564:-1:exon

WP_232962812.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8965-9564:-1:exon

CUV01_RS19505
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19505
old locus tag: CUV01_19500
so part of: sequence
location: 9753..10169
location: region:9753-10169:1
so has part: feature:9753-10169:1:exon
subclass of: SO_0000010

position:9753:1
position: 9753
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10169:1
position: 10169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9753-10169:1:exon

CUV01_RS19505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19505
old locus tag: CUV01_19500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011974795.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MLSIGELSRRTRVKVPTIRYYETVGLLTAPERTGGNQRRYDQAGLERLSFIRHARELGFSIEAISSLIELQDHPDRSCQAATEIAAAQLSDVRAKIKRLHALEKELLRIADGCDGDGVSEDCYVLASLADHDLCQREH
SIO_010081: CUV01_RS19505
subclass of: SO_0000673
so part of: CUV01_RS19505
location: 9753..10169
location: region:9753-10169:1
so has part: feature:9753-10169:1:exon

WP_101462403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9753-10169:1:exon

CUV01_RS19510
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19510
old locus tag: CUV01_19505
so part of: sequence
location: complement(10383..11267)
location: region:10383-11267:-1
so has part: feature:10383-11267:-1:exon
subclass of: SO_0000010

position:10383:-1
position: 10383
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11267:-1
position: 11267
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10383-11267:-1:exon

CUV01_RS19510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19510
old locus tag: CUV01_19505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011536558.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MTKEKFDVYTHVTNQIIAQIETGTPPWRKPWTGGGAGVCLPERFNGEAYRGINILMLWATAMAKDYSSARWMTFNQAKQLGGHVRKGEKSATVVKYGTVEREDENGEERQIPYAKAYRVFNADQIEGLPAEFYILPDPPRDLGTEADPELEAFFAATGAQIDVTEEPRAYYNIKIDRIHMPPIGTFHRAAGYYGTLAHELTHWTGATKRLDRLGRFNDRKAYAFEELVAEIGNCMLCAQIGVEPEFDQSAAYVEGWLEAMKEDSRAIFRAASEAQKAVDYIMDRTAQADRMAAE
SIO_010081: CUV01_RS19510
subclass of: SO_0000673
so part of: CUV01_RS19510
location: complement(10383..11267)
location: region:10383-11267:-1
so has part: feature:10383-11267:-1:exon

WP_101462404.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10383-11267:-1:exon

CUV01_RS19520
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19520
old locus tag: CUV01_19515
so part of: sequence
location: complement(12452..12766)
location: region:12452-12766:-1
so has part: feature:12452-12766:-1:exon
subclass of: SO_0000010

position:12452:-1
position: 12452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12766:-1
position: 12766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12452-12766:-1:exon

CUV01_RS19520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19520
old locus tag: CUV01_19515
inference: COORDINATES: protein motif:HMM:NF024811.2
GO function: GO:0016787 - hydrolase activity [Evidence IEA]
GO process: GO:0008152 - metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAD-IA family hydrolase
translation: MADIWARLRGKELRLALCSNLASDYVTALRGALPDPLDVEVLSCKVEAIKPEPAIYAAVLDGLQVKAGRVLFVGDKPHADIMGSRAAGMKAMHVDELVAAMRSG
SIO_010081: CUV01_RS19520
subclass of: SO_0000673
so part of: CUV01_RS19520
location: complement(12452..12766)
location: region:12452-12766:-1
so has part: feature:12452-12766:-1:exon

WP_157994949.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12452-12766:-1:exon

CUV01_RS19525
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
gene: mobQ
locus tag: CUV01_RS19525
old locus tag: CUV01_19520
so part of: sequence
location: complement(12892..14199)
location: region:12892-14199:-1
so has part: feature:12892-14199:-1:exon
subclass of: SO_0000010

position:12892:-1
position: 12892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14199:-1
position: 14199
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12892-14199:-1:exon

CUV01_RS19525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
gene: mobQ
locus tag: CUV01_RS19525
old locus tag: CUV01_19520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655527.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKQGIEETFILAPKDAPDWALDRSKLWNEVEASETRRNSVTAREWELALPSEISADDRSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHVLTSTRKLEAQGFTAKTRVLDSAKTGGVEIEQMRGVWADLQNRALERAGEVERVDHRSLEAQREAALERGDQLSAEELDRDPELKLGPAANSMERRAKAMAERQGREYVPVTERGAVVHAARQARAAFRELRERLDIARETYGAERDAGQGRVSAGLAALRAAAAKERSARDGPEDMRERLARVVGRSEDRDDAPKLEGRNYARERLKEIMEKDAGRDGQAAVHRLDGHSDPELGEDTGREERKPSVNERLKDVLNKPREKLEIEDARDQEKDQEVEKENEREIDREIDRDPGLSH
SIO_010081: CUV01_RS19525
subclass of: SO_0000673
so part of: CUV01_RS19525
location: complement(12892..14199)
location: region:12892-14199:-1
so has part: feature:12892-14199:-1:exon

WP_101462407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12892-14199:-1:exon

CUV01_RS19530
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19530
old locus tag: CUV01_19525
so part of: sequence
location: 14847..15149
location: region:14847-15149:1
so has part: feature:14847-15149:1:exon
subclass of: SO_0000010

position:14847:1
position: 14847
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15149:1
position: 15149
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14847-15149:1:exon

CUV01_RS19530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19530
old locus tag: CUV01_19525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011655525.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MSETELDRAEKRYAQAKARLQALRNREATRQRKLDTRRKVILGGALLDLAERDSGAAAMVDRLIRNLSRDQDRKAFAEWDGATPGGDNSPARPSDPDGSG
SIO_010081: CUV01_RS19530
subclass of: SO_0000673
so part of: CUV01_RS19530
location: 14847..15149
location: region:14847-15149:1
so has part: feature:14847-15149:1:exon

WP_101462415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14847-15149:1:exon

CUV01_RS19535
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19535
old locus tag: CUV01_19530
so part of: sequence
location: 15149..16876
location: region:15149-16876:1
so has part: feature:15149-16876:1:exon
subclass of: SO_0000010

position:16876:1
position: 16876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15149-16876:1:exon

CUV01_RS19535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19535
old locus tag: CUV01_19530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009503751.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MRSVMLFMGGLARFFYRLIATPILFGWMIGAMAFGAMLGFVIGGVVTISAFGPPLGQSAWEWAILAPCVFIGVVFGFQYWRNVSGADVFFGLTGDSHGSARFASRKELKKQQGGDGLLIGRNPGTGRLLRYDGPAHLITLAPTRAGKGVGTVIPNLLVVDRSVLVIDPKGENARIAGEARRRFGTVHVLDPFEVSGIPSAAYNPLDRLTPDSLDLGEDAASLTEALVMDPAGQVQEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLPPDRLKALLELMQDSDTAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIARCLARSDFAFSDLRHRITSVFLVLPPNRMDAYSRWLRLLVSQALQDIARDAEVATGAPAALAASDEAPVAAPALSGAPAAPLSATGRLKAPTLFLLDEFAALGRLEAVERAMGLMAGYGLQLWPILQDMSQLRDLYGDRANTFIANAGVQQVFGVNDFETAKWLSQMIGQETSRFQTDSFKPGDGPSFSNHLTGRDLLTPDEIMQMPPNVQLLRVQGQPSALAQKLRYYVDPEFRGLFVPQNAA
SIO_010081: CUV01_RS19535
subclass of: SO_0000673
so part of: CUV01_RS19535
location: 15149..16876
location: region:15149-16876:1
so has part: feature:15149-16876:1:exon

WP_101462408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15149-16876:1:exon

CUV01_RS19540
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19540
old locus tag: CUV01_19535
so part of: sequence
location: 16896..17453
location: region:16896-17453:1
so has part: feature:16896-17453:1:exon
subclass of: SO_0000010

position:16896:1
position: 16896
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17453:1
position: 17453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16896-17453:1:exon

CUV01_RS19540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19540
old locus tag: CUV01_19535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009503750.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSQESDQPEFPALSDDEIHKSLDDIATLLAGQSNRMDEQTKVLNRLSEVAIAARQAAFAAREQTDPEHYADFAVKLMEDRTGKIIDRMNDVASGLIRASNHTATVLKEAEQDRSAVHRQLWEREQRLDQWKSRWWLFGLAALVLALAMAVTLPRFLASYGSTCAVLGGVWTTTSANTDVCAFYGD
SIO_010081: CUV01_RS19540
subclass of: SO_0000673
so part of: CUV01_RS19540
location: 16896..17453
location: region:16896-17453:1
so has part: feature:16896-17453:1:exon

WP_101462409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16896-17453:1:exon

CUV01_RS19545
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19545
old locus tag: CUV01_19540
so part of: sequence
location: 17956..19041
location: region:17956-19041:1
so has part: feature:17956-19041:1:exon
subclass of: SO_0000010

position:17956:1
position: 17956
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19041:1
position: 19041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17956-19041:1:exon

CUV01_RS19545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19545
old locus tag: CUV01_19540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009503749.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MVGEITKPDRTPLLPLRHAQGDFFVCDIFDAAPKGDMASMAHPIFTLSTKPDTKKRRYVAADGKSYVEIRPNMIGLATVHDRDVLIYCISQVMAALNDGKQVHRTLRFKAYDLLVATNRPVAGTGYSGLKAALERLQGTQIETNITTGGVEQIDGFSLIDRYRIVRETRDGRMLDLEVTLSDWVFNAIAGDDVLTLNRRYFQLRKPLERRLYELARKQCGTQPEWKCGLDKLKDRTGSTSSDKEFRRLVRAICKADEEHNHMPDYAFRMEADILTVTPKPEFLENYAPKPEQDRLTGGYVLPLSPDTLERARELAPTWDITVLVGEWRSYAARQKEPPKNPDAAFLGFCKSWFKKRGRNGW
SIO_010081: CUV01_RS19545
subclass of: SO_0000673
so part of: CUV01_RS19545
location: 17956..19041
location: region:17956-19041:1
so has part: feature:17956-19041:1:exon

WP_101462410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17956-19041:1:exon

CUV01_RS19550
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
locus tag: CUV01_RS19550
old locus tag: CUV01_19545
so part of: sequence
location: complement(19059..19268)
location: region:19059-19268:-1
so has part: feature:19059-19268:-1:exon
subclass of: SO_0000010

position:19059:-1
position: 19059
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19268:-1
position: 19268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19059-19268:-1:exon

CUV01_RS19550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
locus tag: CUV01_RS19550
old locus tag: CUV01_19545
inference: COORDINATES: protein motif:HMM:NF020835.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid partition protein ParG
translation: MALSAKRPSRGDEARKRILHEVTETTERKKRLNAEIEETLYRRIKMKAVEEGRSISDITRDLWSEYLSE
SIO_010081: CUV01_RS19550
subclass of: SO_0000673
so part of: CUV01_RS19550
location: complement(19059..19268)
location: region:19059-19268:-1
so has part: feature:19059-19268:-1:exon

WP_101462411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19059-19268:-1:exon

CUV01_RS19555
type: Gene
subclass of: SO_0000704
RO_0002162: 1529068
gene: parA
locus tag: CUV01_RS19555
old locus tag: CUV01_19550
so part of: sequence
location: complement(19268..19918)
location: region:19268-19918:-1
so has part: feature:19268-19918:-1:exon
subclass of: SO_0000010

position:19918:-1
position: 19918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19268-19918:-1:exon

CUV01_RS19555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1529068
gene: parA
locus tag: CUV01_RS19555
old locus tag: CUV01_19550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009503747.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MSIISVLNPKGGSGKTTISTNLARSLHELGHSVLIVDSDPQGSARDWHAASEDNPIELVALDRPNNVKTLASMAANYDHVVIDGAAKLEDMIAACIKVSDFVLIPVQPSPYDIWAASDLVEFIKARQEVTDGSPRAGFVVSRIVEGTRLGSDVRTALDDYALPVCETTITQRQVYPQTASEGLTVFDADNAKARAETTALSNEILAMLATAKREVA
SIO_010081: CUV01_RS19555
subclass of: SO_0000673
so part of: CUV01_RS19555
location: complement(19268..19918)
location: region:19268-19918:-1
so has part: feature:19268-19918:-1:exon

WP_101462412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19268-19918:-1:exon