Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Boseaceae; Bosea.
Bosea vaviloviae sp. nov., a new species of slow-growing rhizobia isolated from nodules of the relict species Vavilovia formosa (Stev.) Fed
Submitted (07-SEP-2016) Laboratory of microbiological monitoring and bioremediation of soils, All-Russia Research Institute for Agricultural Microbiology, Podbelsky sh. 3, St-Petersburg 196608, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP017148.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/25/2023 06:11:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,338\nCDSs (total) :: 6,279\nGenes (coding) :: 6,181\nCDSs (with protein) :: 6,181\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 98\nCDSs (without protein) :: 98\nPseudo Genes (ambiguous residues) :: 0 of 98\nPseudo Genes (frameshifted) :: 31 of 98\nPseudo Genes (incomplete) :: 78 of 98\nPseudo Genes (internal stop) :: 4 of 98\nPseudo Genes (multiple problems) :: 14 of 98\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
All-Russia Research Institute for Agricultural Microbiology
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007594338.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007439263.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007594335.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_007594333.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008082991.1
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018303121.1
COORDINATES: similar to AA sequence:RefSeq:WP_004864220.1
COORDINATES: similar to AA sequence:RefSeq:WP_007829072.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011766713.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0052873 - FMN reductase (NADPH) activity [Evidence IEA]; GO:0008752 - FMN reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015664750.1
COORDINATES: similar to AA sequence:RefSeq:WP_008140601.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011085460.1
COORDINATES: similar to AA sequence:RefSeq:WP_008968777.1
COORDINATES: similar to AA sequence:RefSeq:WP_009031042.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008943860.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007593071.1
COORDINATES: similar to AA sequence:RefSeq:WP_012331837.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007593069.1
COORDINATES: similar to AA sequence:RefSeq:WP_014496496.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0018506 - maleylacetate reductase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008968782.1
COORDINATES: similar to AA sequence:RefSeq:WP_018458707.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012251163.1
COORDINATES: similar to AA sequence:RefSeq:WP_008963974.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008598303.1
COORDINATES: protein motif:HMM:NF006002.0
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009493050.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010930731.1
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_009736467.1
COORDINATES: similar to AA sequence:RefSeq:WP_019197206.1
COORDINATES: similar to AA sequence:RefSeq:WP_006020460.1
COORDINATES: similar to AA sequence:RefSeq:WP_013503215.1
GO:0055085 - transmembrane transport [Evidence IEA]
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_015666406.1
COORDINATES: protein motif:HMM:NF019013.2
GO:0030638 - polyketide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015886715.1
GO:0018576 - catechol 1,2-dioxygenase activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]
GO:0009712 - catechol-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012559030.1
GO:0018817 - 2-oxo-hept-3-ene-1,7-dioate hydratase activity [Evidence IEA]
2-oxo-hepta-3-ene-1,7-dioic acid hydratase
COORDINATES: similar to AA sequence:RefSeq:WP_018325000.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015458382.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_013165300.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015886716.1
COORDINATES: similar to AA sequence:RefSeq:WP_018316881.1
COORDINATES: similar to AA sequence:RefSeq:WP_020226885.1
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: similar to AA sequence:RefSeq:WP_014175680.1
COORDINATES: protein motif:HMM:NF024825.2
COORDINATES: similar to AA sequence:RefSeq:WP_013053707.1
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0006555 - methionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484505.1
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_018905352.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007605289.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018643305.1
COORDINATES: protein motif:HMM:NF014795.2
COORDINATES: similar to AA sequence:RefSeq:WP_018184325.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554517.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013591304.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_010465487.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018006582.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011482446.1
GO:0008838 - diaminopropionate ammonia-lyase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: similar to AA sequence:RefSeq:WP_018318927.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006204858.1
GO:0004736 - pyruvate carboxylase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011969965.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007421583.1
COORDINATES: similar to AA sequence:RefSeq:WP_011993117.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_015934054.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012335535.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013533423.1
COORDINATES: similar to AA sequence:RefSeq:WP_014764213.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012116519.1
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018390554.1
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013532460.1
COORDINATES: similar to AA sequence:RefSeq:WP_003569813.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007594276.1
CmpA/NrtA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018410459.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013107426.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: similar to AA sequence:RefSeq:WP_007739911.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007688689.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755237.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018484257.1
COORDINATES: similar to AA sequence:RefSeq:WP_016558773.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611445.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_010913673.1
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006471724.1
GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]; GO:0033294 - ectoine binding [Evidence IEA]; GO:0033295 - hydroxyectoine binding [Evidence IEA]
GO:0051470 - ectoine transport [Evidence IEA]; GO:0033308 - hydroxyectoine transport [Evidence IEA]
ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB
COORDINATES: similar to AA sequence:RefSeq:WP_010658663.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
ectoine/hydroxyectoine ABC transporter permease subunit EhuC
COORDINATES: similar to AA sequence:RefSeq:WP_004431448.1
ectoine/hydroxyectoine ABC transporter permease subunit EhuD
COORDINATES: similar to AA sequence:RefSeq:WP_010875189.1
GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0033286 - ATPase-coupled ectoine transmembrane transporter activity [Evidence IEA]; GO:0033288 - ATPase-coupled hydroxyectoine transmembrane transporter activity [Evidence IEA]
ectoine/hydroxyectoine ABC transporter ATP-binding protein EhuA
COORDINATES: protein motif:HMM:NF012766.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012169816.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011970025.1
COORDINATES: similar to AA sequence:RefSeq:WP_004674129.1
COORDINATES: similar to AA sequence:RefSeq:WP_018517076.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_009488943.1
COORDINATES: similar to AA sequence:RefSeq:WP_015318455.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437211.1
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: similar to AA sequence:RefSeq:WP_019403239.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006219850.1
COORDINATES: similar to AA sequence:RefSeq:WP_015952378.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018184315.1
COORDINATES: similar to AA sequence:RefSeq:WP_011087945.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011504864.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011505040.1
COORDINATES: similar to AA sequence:RefSeq:WP_011504862.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578619.1
COORDINATES: similar to AA sequence:RefSeq:WP_015822429.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915775.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523830.1
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501391.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018238686.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_018238687.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011993086.1
COORDINATES: similar to AA sequence:RefSeq:WP_011993085.1
COORDINATES: similar to AA sequence:RefSeq:WP_002718983.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501400.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501402.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578766.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564795.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018390217.1
COORDINATES: similar to AA sequence:RefSeq:WP_002718987.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333879.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003403410.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019747363.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018431448.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003501412.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564798.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989420.1
COORDINATES: similar to AA sequence:RefSeq:WP_015341926.1
COORDINATES: similar to AA sequence:RefSeq:WP_011607949.1
COORDINATES: similar to AA sequence:RefSeq:WP_043767785.1
COORDINATES: similar to AA sequence:RefSeq:WP_012112581.1
COORDINATES: similar to AA sequence:RefSeq:WP_008226891.1
COORDINATES: similar to AA sequence:RefSeq:WP_014498608.1
COORDINATES: similar to AA sequence:RefSeq:WP_006339658.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011581884.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: protein motif:HMM:NF012640.2
COORDINATES: similar to AA sequence:RefSeq:WP_007009965.1
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_019172006.1
COORDINATES: similar to AA sequence:RefSeq:WP_017235729.1
COORDINATES: similar to AA sequence:RefSeq:WP_020229889.1
COORDINATES: similar to AA sequence:RefSeq:WP_018309561.1
GO:0015137 - citrate transmembrane transporter activity [Evidence IEA]
GO:0015746 - citrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654168.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011427106.1
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]
GO:0006796 - phosphate-containing compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018453172.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020180026.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654166.1
Members of this family are phasins (small proteins associated with inclusions such as PHA granules). Note that several different families of phasins have been named PhaP despite very little sequence similarity to each other; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020180028.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017270306.1
class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC
COORDINATES: similar to AA sequence:RefSeq:WP_011654154.1
poly(R)-hydroxyalkanoic acid synthase subunit PhaE
COORDINATES: similar to AA sequence:RefSeq:WP_017968920.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007609200.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011632750.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
isocitrate/isopropylmalate family dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008834508.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014200002.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF020110.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF024921.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611153.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007977099.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015932101.1
COORDINATES: similar to AA sequence:RefSeq:WP_015932102.1
COORDINATES: similar to AA sequence:RefSeq:WP_015932103.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0008888 - glycerol dehydrogenase [NAD+] activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015932104.1
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_015932107.1
COORDINATES: similar to AA sequence:RefSeq:WP_015932108.1
COORDINATES: similar to AA sequence:RefSeq:WP_004432683.1
COORDINATES: similar to AA sequence:RefSeq:WP_015932110.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015932111.1
COORDINATES: similar to AA sequence:RefSeq:WP_009031174.1
COORDINATES: similar to AA sequence:RefSeq:WP_013653307.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003598950.1
COORDINATES: similar to AA sequence:RefSeq:WP_015932166.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115573.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018387494.1
GO:0046872 - metal ion binding [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011156396.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019403204.1
COORDINATES: similar to AA sequence:RefSeq:WP_014766239.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438501.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290811.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_054926070.1
COORDINATES: protein motif:HMM:NF006056.0
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007672363.1
COORDINATES: similar to AA sequence:RefSeq:WP_015687587.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018906670.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_007731053.1
COORDINATES: similar to AA sequence:RefSeq:WP_015664141.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399045.1
COORDINATES: similar to AA sequence:RefSeq:WP_013166713.1
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018390721.1
COORDINATES: similar to AA sequence:RefSeq:WP_018390720.1
COORDINATES: similar to AA sequence:RefSeq:WP_019430633.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
DctP family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:NF019349.2
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015923186.1
COORDINATES: similar to AA sequence:RefSeq:WP_014494606.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015821243.1
COORDINATES: similar to AA sequence:RefSeq:WP_008888291.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403085.1
COORDINATES: similar to AA sequence:RefSeq:WP_008888163.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469650.1
COORDINATES: similar to AA sequence:RefSeq:WP_012406224.1
COORDINATES: similar to AA sequence:RefSeq:WP_006469648.1
COORDINATES: similar to AA sequence:RefSeq:WP_019403090.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017639902.1
COORDINATES: similar to AA sequence:RefSeq:WP_014619539.1
COORDINATES: similar to AA sequence:RefSeq:WP_008888035.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006019920.1
COORDINATES: similar to AA sequence:RefSeq:WP_017685527.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501469.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_003551674.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017978116.1
COORDINATES: similar to AA sequence:RefSeq:WP_011914489.1
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:NF013094.2
COORDINATES: protein motif:HMM:NF025808.2
multiubiquitin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018247128.1
COORDINATES: protein motif:HMM:NF025120.2
COORDINATES: similar to AA sequence:RefSeq:WP_003167771.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF040876.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915931.1
COORDINATES: similar to AA sequence:RefSeq:WP_011578834.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915932.1
COORDINATES: similar to AA sequence:RefSeq:WP_012973766.1
COORDINATES: protein motif:HMM:NF015786.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF026257.2
COORDINATES: similar to AA sequence:RefSeq:WP_019846544.1
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: similar to AA sequence:RefSeq:WP_012520331.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013913705.1
COORDINATES: similar to AA sequence:RefSeq:WP_011992920.1
COORDINATES: similar to AA sequence:RefSeq:WP_006204736.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012564771.1
COORDINATES: similar to AA sequence:RefSeq:WP_015931083.1
COORDINATES: similar to AA sequence:RefSeq:WP_018391520.1
COORDINATES: similar to AA sequence:RefSeq:WP_018264086.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046783.1
COORDINATES: similar to AA sequence:RefSeq:WP_018273827.1
COORDINATES: similar to AA sequence:RefSeq:WP_015597195.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019200156.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564806.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564807.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023708.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719034.1
COORDINATES: similar to AA sequence:RefSeq:WP_011505110.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719031.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023714.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012564815.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200167.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012564817.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_012564818.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564819.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564822.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012564823.1
COORDINATES: similar to AA sequence:RefSeq:WP_012564824.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_006023724.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915833.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011505126.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009796418.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916073.1
COORDINATES: similar to AA sequence:RefSeq:WP_010916055.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400269.1
COORDINATES: similar to AA sequence:RefSeq:WP_013893984.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568270.1
COORDINATES: similar to AA sequence:RefSeq:WP_007009031.1
succinylglutamate desuccinylase/aspartoacylase family protein
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013893981.1
COORDINATES: similar to AA sequence:RefSeq:WP_019863731.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: similar to AA sequence:RefSeq:WP_010916228.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018431284.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent cysteine synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010916230.1
COORDINATES: similar to AA sequence:RefSeq:WP_006022538.1
COORDINATES: similar to AA sequence:RefSeq:WP_003501751.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_011237176.1
COORDINATES: similar to AA sequence:RefSeq:WP_003160508.1
COORDINATES: similar to AA sequence:RefSeq:WP_011313598.1
COORDINATES: similar to AA sequence:RefSeq:WP_017277911.1
COORDINATES: protein motif:HMM:NF037530.2
COORDINATES: protein motif:HMM:NF024770.2
substrate-binding domain-containing protein