Clostridium beijerinckii strain DSM 791 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
Complete genome sequence of the type strain Clostridium beijerinckii NRRL B-598
Submitted (23-APR-2021) Department of Biomedical Engineering, Brno University of Technology, Technicka 12, Brno 61600, Czech Republic
REFSEQ INFORMATION: The reference sequence is identical to\nCP073654.1.\nBacteria and source DNA available from Department of Biotechnology,\nUniversity of Chemistry and Technology Prague, Technicka 5, 166 28\nPrague, Czechia.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: APR-2021\nAssembly Method :: Flye v. 2.8.1; SPAdes v. 3.11.1; racon v.\n 1.4.20; medaka v. 1.2.5; pilon v. 1.24\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1063.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 04:51:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,326\nCDSs (total) :: 5,178\nGenes (coding) :: 5,098\nCDSs (with protein) :: 5,098\nGenes (RNA) :: 148\nrRNAs :: 17, 16, 16 (5S, 16S, 23S)\ncomplete rRNAs :: 17, 16, 16 (5S, 16S, 23S)\ntRNAs :: 93\nncRNAs :: 6\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 42 of 80\nPseudo Genes (incomplete) :: 33 of 80\nPseudo Genes (internal stop) :: 14 of 80\nPseudo Genes (multiple problems) :: 8 of 80\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF013235.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017825982.1
COORDINATES: similar to AA sequence:RefSeq:WP_017825981.1
COORDINATES: similar to AA sequence:RefSeq:WP_014253648.1
COORDINATES: similar to AA sequence:RefSeq:WP_013297052.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007784911.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009534940.1
GO:0004519 - endonuclease activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system YoeB family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017352474.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_002582491.1
COORDINATES: similar to AA sequence:RefSeq:WP_002582490.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017212202.1
COORDINATES: similar to AA sequence:RefSeq:WP_008423999.1
COORDINATES: similar to AA sequence:RefSeq:WP_015393729.1
COORDINATES: similar to AA sequence:RefSeq:WP_017352450.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_017352451.1
COORDINATES: similar to AA sequence:RefSeq:WP_004455329.1
COORDINATES: similar to AA sequence:RefSeq:WP_004455331.1
COORDINATES: similar to AA sequence:RefSeq:WP_009168350.1
COORDINATES: similar to AA sequence:RefSeq:WP_009168351.1
COORDINATES: similar to AA sequence:RefSeq:WP_003411328.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012199468.1
COORDINATES: similar to AA sequence:RefSeq:WP_009171135.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_009171136.1
COORDINATES: similar to AA sequence:RefSeq:WP_012059578.1
COORDINATES: similar to AA sequence:RefSeq:WP_012059577.1
COORDINATES: similar to AA sequence:RefSeq:WP_017210184.1
COORDINATES: similar to AA sequence:RefSeq:WP_012059890.1
COORDINATES: similar to AA sequence:RefSeq:WP_017208955.1
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008426841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008426844.1
COORDINATES: protein motif:HMM:TIGR03651.1
uberolysin/carnocyclin family circular bacteriocin
COORDINATES: protein motif:HMM:NF014052.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_017209781.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003370244.1
COORDINATES: similar to AA sequence:RefSeq:WP_017353162.1
COORDINATES: similar to AA sequence:RefSeq:WP_017210269.1
COORDINATES: similar to AA sequence:RefSeq:WP_017212437.1
COORDINATES: similar to AA sequence:RefSeq:WP_009170627.1
COORDINATES: similar to AA sequence:RefSeq:WP_013788025.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017352411.1
COORDINATES: similar to AA sequence:RefSeq:WP_017826229.1
COORDINATES: protein motif:HMM:NF024637.2
COORDINATES: protein motif:HMM:NF026253.2
COORDINATES: protein motif:HMM:NF040203.1
COORDINATES: similar to AA sequence:RefSeq:WP_017825635.1
COORDINATES: similar to AA sequence:RefSeq:WP_017352463.1
COORDINATES: similar to AA sequence:RefSeq:WP_020074622.1
COORDINATES: similar to AA sequence:RefSeq:WP_002290544.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003373265.1
COORDINATES: similar to AA sequence:RefSeq:WP_005605245.1
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF024098.2