Lactobacillus intestinalis strain DSM 6629 plasmid unnamed1.
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.
Lactobacillus intestinalis-derived indole-3-propionic acid mediates benefits of maternal tryptophan metabolism on offspring intestinal health
Submitted (12-APR-2021) Centre of Healthy Animal Husbandry, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Yuandaer Road 644, Furong District, Changsha, Hunan 410125, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP072984.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Link v. v5.0.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 462.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/28/2022 20:51:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 1,925\nCDSs (total) :: 1,851\nGenes (coding) :: 1,806\nCDSs (with protein) :: 1,806\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 3\nPseudo Genes (total) :: 45\nCDSs (without protein) :: 45\nPseudo Genes (ambiguous residues) :: 0 of 45\nPseudo Genes (frameshifted) :: 15 of 45\nPseudo Genes (incomplete) :: 28 of 45\nPseudo Genes (internal stop) :: 10 of 45\nPseudo Genes (multiple problems) :: 7 of 45\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##
type strain of Lactobacillus intestinalis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012846842.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005719553.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014563640.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010772876.1
COORDINATES: similar to AA sequence:RefSeq:WP_016176865.1
COORDINATES: similar to AA sequence:RefSeq:WP_000608683.1
COORDINATES: protein motif:HMM:NF033904.1
COORDINATES: similar to AA sequence:RefSeq:WP_002492035.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003771347.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896711.1
COORDINATES: similar to AA sequence:RefSeq:WP_012846839.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896683.1
COORDINATES: similar to AA sequence:RefSeq:WP_020807713.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896685.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896686.1
COORDINATES: similar to AA sequence:RefSeq:WP_003547384.1
COORDINATES: similar to AA sequence:RefSeq:WP_004896688.1