Halovenus salina strain JCM 30072 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Halovenus.
Diverse halophilic archaea isolated from saline environments
Submitted (18-NOV-2022) School of Food and Biological Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP112973.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 2.04\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 230.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:49:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,781\nCDSs (total) :: 3,726\nGenes (coding) :: 3,608\nCDSs (with protein) :: 3,608\nGenes (RNA) :: 55\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 118\nCDSs (without protein) :: 118\nPseudo Genes (ambiguous residues) :: 0 of 118\nPseudo Genes (frameshifted) :: 50 of 118\nPseudo Genes (incomplete) :: 86 of 118\nPseudo Genes (internal stop) :: 19 of 118\nPseudo Genes (multiple problems) :: 31 of 118\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009488261.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007703750.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007189742.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_005038771.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_014555081.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004049619.1
COORDINATES: similar to AA sequence:RefSeq:WP_007701889.1
COORDINATES: similar to AA sequence:RefSeq:WP_015319753.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667810.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006882503.1
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: similar to AA sequence:RefSeq:WP_007143114.1
COORDINATES: protein motif:HMM:NF012982.2
GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]
GO:0006470 - protein dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: protein motif:HMM:TIGR01766.2
COORDINATES: similar to AA sequence:RefSeq:WP_008422485.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004514845.1
COORDINATES: similar to AA sequence:RefSeq:WP_009376993.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004060458.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524224.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008443589.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004048599.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344285.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524566.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035178.1
COORDINATES: similar to AA sequence:RefSeq:WP_015320480.1
COORDINATES: protein motif:HMM:NF019217.2
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222252.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594148.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651308.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324459.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517798.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667195.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012945876.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183332.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516401.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035143.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181027.1
COORDINATES: similar to AA sequence:RefSeq:WP_017343383.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004517446.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966833.1
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018256085.1
COORDINATES: similar to AA sequence:RefSeq:WP_014041007.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006882386.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023390.2
COORDINATES: similar to AA sequence:RefSeq:WP_011222276.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006067828.1
COORDINATES: similar to AA sequence:RefSeq:WP_004956641.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598886.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992744.1
COORDINATES: similar to AA sequence:RefSeq:WP_006430595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008439973.1
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006092734.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006671487.1
COORDINATES: protein motif:HMM:NF007739.0
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006168409.1
COORDINATES: similar to AA sequence:RefSeq:WP_015789955.1
COORDINATES: similar to AA sequence:RefSeq:WP_005578848.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572359.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847104.1
COORDINATES: similar to AA sequence:RefSeq:WP_018256477.1
COORDINATES: similar to AA sequence:RefSeq:WP_005554122.1
COORDINATES: similar to AA sequence:RefSeq:WP_005577241.1
COORDINATES: similar to AA sequence:RefSeq:WP_008162477.1
COORDINATES: similar to AA sequence:RefSeq:WP_007260408.1
COORDINATES: protein motif:HMM:NF025114.2
COORDINATES: similar to AA sequence:RefSeq:WP_006671248.1
COORDINATES: similar to AA sequence:RefSeq:WP_049938896.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216193.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572362.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630635.1
energy-coupling factor ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008572365.1
energy-coupling factor transporter transmembrane component T
COORDINATES: similar to AA sequence:RefSeq:WP_008572367.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572369.1
energy-coupling factor ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014555927.1
nickel-responsive transcriptional regulator NikR
COORDINATES: similar to AA sequence:RefSeq:WP_018257571.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006630630.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041006.1
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004516568.1
COORDINATES: protein motif:HMM:NF020084.2
FIST C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF024583.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006182237.1
histidine kinase N-terminal 7TM domain-containing protein
COORDINATES: protein motif:HMM:NF025643.2
COORDINATES: similar to AA sequence:RefSeq:WP_007344289.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965079.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189768.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043413.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006180087.1
COORDINATES: similar to AA sequence:RefSeq:WP_004599401.1
DUF262 domain-containing HNH endonuclease family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890501.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890500.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762297.1
COORDINATES: similar to AA sequence:RefSeq:WP_012945391.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457963.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611210.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524888.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188050.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992723.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188048.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966861.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053455.1
COORDINATES: similar to AA sequence:RefSeq:WP_017343986.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006630362.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344000.1
COORDINATES: similar to AA sequence:RefSeq:WP_006666993.1
COORDINATES: similar to AA sequence:RefSeq:WP_011322581.1
COORDINATES: similar to AA sequence:RefSeq:WP_008414181.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183517.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015299316.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_008423395.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_013035031.1
COORDINATES: protein motif:HMM:NF033545.0
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011571232.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021521.2
COORDINATES: similar to AA sequence:RefSeq:WP_006667194.1