UNVERIFIED_ORG: Clostridium sporogenes strain FDAARGOS_1532 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (20-SEP-2021) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, White Oak, MD 20903, USA
GenBank staff is unable to verify source organism provided by the\nsubmitter.\nREFSEQ INFORMATION: The reference sequence is identical to\nCP084663.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 9.0.0, HGAP v. 4.0\nGenome Coverage :: 1328.72x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 06:54:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,983\nCDSs (total) :: 3,865\nGenes (coding) :: 3,810\nCDSs (with protein) :: 3,810\nGenes (RNA) :: 118\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 21 of 55\nPseudo Genes (incomplete) :: 33 of 55\nPseudo Genes (internal stop) :: 16 of 55\nPseudo Genes (multiple problems) :: 13 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015617852.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011460105.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017895111.1
COORDINATES: protein motif:HMM:NF026872.2
polymorphic toxin type 35 domain-containing protein
COORDINATES: protein motif:HMM:NF024421.2
COORDINATES: similar to AA sequence:RefSeq:WP_011988281.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988288.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988273.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988296.1
COORDINATES: similar to AA sequence:RefSeq:WP_017352228.1
COORDINATES: similar to AA sequence:RefSeq:WP_012342927.1
COORDINATES: similar to AA sequence:RefSeq:WP_014519991.1
COORDINATES: similar to AA sequence:RefSeq:WP_003484956.1
COORDINATES: similar to AA sequence:RefSeq:WP_011987142.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF037161.2
COORDINATES: similar to AA sequence:RefSeq:WP_011988274.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988291.1
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: similar to AA sequence:RefSeq:WP_003488634.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003496432.1
COORDINATES: similar to AA sequence:RefSeq:WP_003361975.1
COORDINATES: protein motif:HMM:TIGR03897.1
GO:0018081 - peptide cross-linking via lanthionine or 3-methyl-lanthionine [Evidence IEA]; GO:0018193 - peptidyl-amino acid modification [Evidence IEA]; GO:0009403 - toxin biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015325.2
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016763.2