Thermococcus eurythermalis strain A501 plasmid unnamed, complete sequence.
type: Entry
definition: Thermococcus eurythermalis strain A501 plasmid unnamed, complete sequence.
sequence version: NZ_CP008888.1
sequence date: 2022-11-10
sequence: sequence
division: CON
label: NZ_CP008888.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02838508
keyword: RefSeq
source: Thermococcus eurythermalis
organism: Thermococcus eurythermalis
taxonomy: Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.
reference: 1
references: 25288278
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP008888.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. 1.05\nCorresponding 16S rRNA :: KJ616741.1\nGenome Coverage :: 1100x\nSequencing Technology :: Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/10/2022 05:24:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,334\nCDSs (total) :: 2,282\nGenes (coding) :: 2,245\nCDSs (with protein) :: 2,245\nGenes (RNA) :: 52\nrRNAs :: 2, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 37\nCDSs (without protein) :: 37\nPseudo Genes (ambiguous residues) :: 0 of 37\nPseudo Genes (frameshifted) :: 17 of 37\nPseudo Genes (incomplete) :: 20 of 37\nPseudo Genes (internal stop) :: 8 of 37\nPseudo Genes (multiple problems) :: 5 of 37\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 3629
topology: circular
so has quality: SO_0000988
location: 1..3629
location: region:1-3629:1
RO_0002162: 1505907

NZ_CP008888
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02838508
type: BioSample
SIO_000068: biosample

1
title: Thermococcus eurythermalis sp. nov., a conditional piezophilic, hyperthermophilic archaeon with a wide temperature range for growth, isolated from an oil-immersed chimney in the Guaymas Basin
author: Zhao, W.
author: Zeng, X.
author: Xiao, X.
journal: Int J Syst Evol Microbiol 65 (Pt 1), 30-35 (2015)
pubmed: 25288278

25288278
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Zhao, W.
author: Zeng, X. II
author: Xiao, X.
journal: Submitted (17-JUN-2014) Shanghai Jiao Tong University, Laboratory of Microbiological Oceanography, 800 Dongchuan Road, B308 Mulan Building, Shanghai, Shanghai 200240, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3629:1
position: 3629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3629:1:source
so part of: sequence
organism: Thermococcus eurythermalis
mol type: genomic DNA
strain: A501
isolation source: oil-immersed sample
culture collection: CGMCC:7834
culture collection: JCM:30233
type material: type strain of Thermococcus eurythermalis
plasmid: unnamed
collection date: 2009-11-14

1505907
type: Taxonomy
SIO_000068: taxonomy

TEU_RS11420
type: Gene
subclass of: SO_0000704
RO_0002162: 1505907
locus tag: TEU_RS11420
old locus tag: TEU_11715
so part of: sequence
location: complement(join(3070..3629,1..100))
location: region:1-3629:-1
so has part: feature:1-100:-1:exon
so has part: feature:3070-3629:-1:exon
subclass of: SO_0000010

25154094
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3629:-1
position: 3629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-100:-1:exon

position:100:-1
position: 100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:3070-3629:-1:exon

position:3070:-1
position: 3070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TEU_RS11420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505907
locus tag: TEU_RS11420
old locus tag: TEU_11715
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEMESGENTSFKKFICLHCGHVFDSDRDAPKCPNCGRRKVIPLETLGESLKKHKDKLKELGVLPEPDPEPQDSEPQETTVEGKVEAKDLETSKSEPVQIEQKVEASKPESDQEPQNSEPKDSPDDVPESDRLLEKYLEELEDVPEKPKPKKLRPKKSKRSITVPAGPSLLEVLIIIGAIVLIWKWLSSRSSKSDDESNVPRPSETYYQIQRNLGHHVLG
SIO_010081: TEU_RS11420
subclass of: SO_0000673
so part of: TEU_RS11420
location: complement(join(3070..3629,1..100))
location: region:1-3629:-1
so has part: feature:1-100:-1:exon
so has part: feature:3070-3629:-1:exon

WP_144244876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-100:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:3070-3629:-1:exon

TEU_RS11425
type: Gene
subclass of: SO_0000704
RO_0002162: 1505907
locus tag: TEU_RS11425
old locus tag: TEU_11720
so part of: sequence
location: complement(81..308)
location: region:81-308:-1
so has part: feature:81-308:-1:exon
subclass of: SO_0000010

25154095
type: Gene
SIO_000068: ncbigene

position:81:-1
position: 81
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:308:-1
position: 308
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:81-308:-1:exon

TEU_RS11425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505907
locus tag: TEU_RS11425
old locus tag: TEU_11720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVELVRLDGSLNFGDGAEVVSVWLNKLSDFEKLKSTFGGIFSTSETSRGVLYSLFVPSFRVRFLCLVRGGGDGKR
SIO_010081: TEU_RS11425
subclass of: SO_0000673
so part of: TEU_RS11425
location: complement(81..308)
location: region:81-308:-1
so has part: feature:81-308:-1:exon

WP_050003993.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:81-308:-1:exon

TEU_RS11430
type: Gene
subclass of: SO_0000704
RO_0002162: 1505907
locus tag: TEU_RS11430
old locus tag: TEU_11725
so part of: sequence
location: complement(637..2244)
location: region:637-2244:-1
so has part: feature:637-2244:-1:exon
subclass of: SO_0000010

25154096
type: Gene
SIO_000068: ncbigene

position:637:-1
position: 637
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2244:-1
position: 2244
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:637-2244:-1:exon

TEU_RS11430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505907
locus tag: TEU_RS11430
old locus tag: TEU_11725
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MYKLKKRLFWIRHRLERRDLTDEERSALELERDRLLKTSQKLLERVSSSSALYGDRFIMDVPEGYVQLCKFLGIAPSDVEISVWVNSSVVDLEFDDASRSSLKLSYVSKVMASKYHPVKGISKGSQEAKRIVRDLLILQDFLDGSLLSYHKGGYVTGNSLLPVRFFVLTLPKEVSLYIWSKLREGDDSALKLFKKLSSRAIREFVLYLVEKEGLPVSKSNLVPGFVQNVHVTGDKNPFEPHIHSHFGVVFVVYDKASRSWYRLNPVLSEEDIEKLREIWKALVIEAFGEVLTGDTILKDFNVWVGDRYYSLPSDYVDVLFELKYNARKMFVNYANYYERRSFSEDFDEEFVRFVFSYDNRTERYGFLTNLKRYLFHLSLSAVGKRRDELLELLDRVEADLVVIDGEKFPAIYRSLIEKREAIRQELSRLESVLDNPSEAFSLLYNEIRSKVESMLSRKRITEERIVSILEGLFGKRIVGYKFVLLEEDVPLYRFLEAHRSVVLLSDRHKTVEFMLWYDPFWEDPPDVLELKIPNS
SIO_010081: TEU_RS11430
subclass of: SO_0000673
so part of: TEU_RS11430
location: complement(637..2244)
location: region:637-2244:-1
so has part: feature:637-2244:-1:exon

WP_144244874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:637-2244:-1:exon

TEU_RS11435
type: Gene
subclass of: SO_0000704
RO_0002162: 1505907
locus tag: TEU_RS11435
old locus tag: TEU_11730
so part of: sequence
location: complement(2552..2818)
location: region:2552-2818:-1
so has part: feature:2552-2818:-1:exon
subclass of: SO_0000010

25154097
type: Gene
SIO_000068: ncbigene

position:2552:-1
position: 2552
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2818:-1
position: 2818
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2552-2818:-1:exon

TEU_RS11435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505907
locus tag: TEU_RS11435
old locus tag: TEU_11730
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
translation: MPKPTRRPSEILQWFREHPGEVTSLKALSLNLNIPYNTVFVVVKKLAEEGKLKKVGRGLYTLADEESGADDNRRGGNRAGRGTDASPS
SIO_010081: TEU_RS11435
subclass of: SO_0000673
so part of: TEU_RS11435
location: complement(2552..2818)
location: region:2552-2818:-1
so has part: feature:2552-2818:-1:exon

WP_050003995.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2552-2818:-1:exon

TEU_RS11440
type: Gene
subclass of: SO_0000704
RO_0002162: 1505907
locus tag: TEU_RS11440
old locus tag: TEU_11735
so part of: sequence
location: complement(2879..3070)
location: region:2879-3070:-1
so has part: feature:2879-3070:-1:exon
subclass of: SO_0000010

25154098
type: Gene
SIO_000068: ncbigene

position:2879:-1
position: 2879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2879-3070:-1:exon

TEU_RS11440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505907
locus tag: TEU_RS11440
old locus tag: TEU_11735
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVMAEDEKPKRSWVEVAFYLFIALVVIWVFVRALKKSQNLIVWNPELGLRLLEKSLSKLGFPT
SIO_010081: TEU_RS11440
subclass of: SO_0000673
so part of: TEU_RS11440
location: complement(2879..3070)
location: region:2879-3070:-1
so has part: feature:2879-3070:-1:exon

WP_144244875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2879-3070:-1:exon