Siccibacter colletis strain YSD YN2 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Siccibacter.
Isolation, identification, and the growth promoting effects of Pantoea dispersa strain YSD J2 from the aboveground leaves of Cyperus esculentus L.Var. Sativus
Submitted (04-MAY-2021) School of Biotechnology, Jiangnan University, Binhu District, Wuxi 214122, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP074353.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: unicycler v. 0.47\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 612.76x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/01/2022 08:21:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,940\nCDSs (total) :: 3,828\nGenes (coding) :: 3,777\nCDSs (with protein) :: 3,777\nGenes (RNA) :: 112\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 82\nncRNAs :: 8\nPseudo Genes (total) :: 51\nCDSs (without protein) :: 51\nPseudo Genes (ambiguous residues) :: 0 of 51\nPseudo Genes (frameshifted) :: 20 of 51\nPseudo Genes (incomplete) :: 37 of 51\nPseudo Genes (internal stop) :: 10 of 51\nPseudo Genes (multiple problems) :: 10 of 51\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006796897.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001142362.1
COORDINATES: similar to AA sequence:RefSeq:WP_000342687.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000884352.1
GO:0004386 - helicase activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000434930.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220997.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220996.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005220995.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220994.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_004216210.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749958.1
COORDINATES: similar to AA sequence:RefSeq:WP_000734973.1
IncN-type entry exclusion lipoprotein EexN
COORDINATES: similar to AA sequence:RefSeq:WP_001749960.1
COORDINATES: similar to AA sequence:RefSeq:WP_012561149.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_000496058.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_001749962.1
COORDINATES: similar to AA sequence:RefSeq:WP_000440698.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749963.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000960954.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_001749964.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749965.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_001452736.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008328818.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004784225.1
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014207212.1
COORDINATES: protein motif:HMM:NF016362.2
COORDINATES: similar to AA sequence:RefSeq:WP_016715809.1
COORDINATES: similar to AA sequence:RefSeq:WP_000690619.1
COORDINATES: similar to AA sequence:RefSeq:WP_020323144.1
COORDINATES: similar to AA sequence:RefSeq:WP_000057569.1
COORDINATES: similar to AA sequence:RefSeq:WP_014710729.1
COORDINATES: similar to AA sequence:RefSeq:WP_012561121.1
COORDINATES: similar to AA sequence:RefSeq:WP_032488541.1
translesion error-prone DNA polymerase V subunit MucB
COORDINATES: similar to AA sequence:RefSeq:WP_107685442.1
translesion error-prone DNA polymerase V autoproteolytic subunit MucA
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004187365.1
COORDINATES: similar to AA sequence:RefSeq:WP_000447669.1
COORDINATES: similar to AA sequence:RefSeq:WP_000881513.1
COORDINATES: similar to AA sequence:RefSeq:WP_000932975.1
COORDINATES: similar to AA sequence:RefSeq:WP_020314977.1
COORDINATES: similar to AA sequence:RefSeq:WP_019706033.1
COORDINATES: similar to AA sequence:RefSeq:WP_000129958.1
COORDINATES: similar to AA sequence:RefSeq:WP_013263793.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260490.1
Hha/YmoA family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_012561126.1
COORDINATES: similar to AA sequence:RefSeq:WP_020323376.1
COORDINATES: similar to AA sequence:RefSeq:WP_012561134.1
COORDINATES: similar to AA sequence:RefSeq:WP_000211832.1
COORDINATES: similar to AA sequence:RefSeq:WP_004210286.1
COORDINATES: similar to AA sequence:RefSeq:WP_000999874.1
COORDINATES: similar to AA sequence:RefSeq:WP_001749972.1
COORDINATES: similar to AA sequence:RefSeq:WP_000861577.1