Paeniclostridium sordellii strain AM370 plasmid pRSJ16_1, complete sequence.
Bacteria; Bacillota; Clostridia; Eubacteriales; Peptostreptococcaceae; Paeniclostridium.
Submitted (23-JAN-2016) BioScience B11, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP014149.1.\nSource DNA available from Shannon Johnson.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.2.08; HGAP v. 3; Phrap v. 4.24\nGenome Coverage :: 311x; 418x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 07:44:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,576\nCDSs (total) :: 3,415\nGenes (coding) :: 3,398\nCDSs (with protein) :: 3,398\nGenes (RNA) :: 161\nrRNAs :: 17, 17, 17 (5S, 16S, 23S)\ncomplete rRNAs :: 17, 17, 17 (5S, 16S, 23S)\ntRNAs :: 106\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 4 of 17\nPseudo Genes (incomplete) :: 9 of 17\nPseudo Genes (internal stop) :: 7 of 17\nPseudo Genes (multiple problems) :: 3 of 17\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011010260.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016990.2
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016048845.1
COORDINATES: similar to AA sequence:RefSeq:WP_011010263.1
COORDINATES: similar to AA sequence:RefSeq:WP_011010264.1
COORDINATES: similar to AA sequence:RefSeq:WP_003459456.1
COORDINATES: similar to AA sequence:RefSeq:WP_004459713.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003464211.1
COORDINATES: similar to AA sequence:RefSeq:WP_003464184.1
COORDINATES: protein motif:HMM:TIGR01665.1
COORDINATES: similar to AA sequence:RefSeq:WP_003702371.1
COORDINATES: similar to AA sequence:RefSeq:WP_003478944.1
COORDINATES: similar to AA sequence:RefSeq:WP_003461851.1
GO:0140911 - pore-forming activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010074649.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018590489.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_009897067.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009894553.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:TIGR02681.1
COORDINATES: similar to AA sequence:RefSeq:WP_011968235.1
conserved phage C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012529.2
COORDINATES: similar to AA sequence:RefSeq:WP_015994388.1
COORDINATES: similar to AA sequence:RefSeq:WP_014313210.1
COORDINATES: protein motif:HMM:NF013964.2
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012704479.1
phage terminase small subunit P27 family
COORDINATES: similar to AA sequence:RefSeq:WP_012721183.1
COORDINATES: similar to AA sequence:RefSeq:WP_012720672.1
COORDINATES: similar to AA sequence:RefSeq:WP_003429614.1