Paeniclostridium sordellii strain AM370 plasmid pRSJ16_1, complete sequence.
type: Entry
definition: Paeniclostridium sordellii strain AM370 plasmid pRSJ16_1, complete sequence.
sequence version: NZ_CP014149.1
sequence date: 2023-02-06
sequence: sequence
division: CON
label: NZ_CP014149.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN04263499
keyword: RefSeq
source: Paeniclostridium sordellii
organism: Paeniclostridium sordellii
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Peptostreptococcaceae; Paeniclostridium.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP014149.1.\nSource DNA available from Shannon Johnson.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.2.08; HGAP v. 3; Phrap v. 4.24\nGenome Coverage :: 311x; 418x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 07:44:27\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,576\nCDSs (total) :: 3,415\nGenes (coding) :: 3,398\nCDSs (with protein) :: 3,398\nGenes (RNA) :: 161\nrRNAs :: 17, 17, 17 (5S, 16S, 23S)\ncomplete rRNAs :: 17, 17, 17 (5S, 16S, 23S)\ntRNAs :: 106\nncRNAs :: 4\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 4 of 17\nPseudo Genes (incomplete) :: 9 of 17\nPseudo Genes (internal stop) :: 7 of 17\nPseudo Genes (multiple problems) :: 3 of 17\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 34354
topology: circular
so has quality: SO_0000988
location: 1..34354
location: region:1-34354:1
RO_0002162: 1505

NZ_CP014149
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN04263499
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: Hill, K.K.
author: Gleasner, C.D.
author: Shou, Y.
author: Daligault, H.E.
author: Kunde, Y.
author: Davenport, K.W.
author: Foley, B.
author: Bruce, D.C.
author: Johnson, S.L.
journal: Submitted (23-JAN-2016) BioScience B11, Los Alamos National Laboratory, PO Box 1663 M888, Los Alamos, NM 87545, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:34354:1
position: 34354
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-34354:1:source
so part of: sequence
organism: Paeniclostridium sordellii
mol type: genomic DNA
strain: AM370
plasmid: pRSJ16_1
country: Australia
note: Botulinum neurotoxin type Ab

1505
type: Taxonomy
SIO_000068: taxonomy

RSJ16_RS00005
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00005
old locus tag: RSJ16_00005
so part of: sequence
location: join(34011..34354,1..820)
location: region:1-34354:1
so has part: feature:34011-34354:1:exon
so has part: feature:1-820:1:exon
subclass of: SO_0000010

57933997
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:34011-34354:1:exon

position:34011:1
position: 34011
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-820:1:exon

position:820:1
position: 820
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

RSJ16_RS00005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00005
old locus tag: RSJ16_00005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011010260.1
GO component: GO:0044423 - virion component [Evidence IEA]
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0019068 - virion assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage major capsid protein
translation: MKKIDEMKNKLANLKNEAQVLLDNNKIQDAKAKMEEIKELKDAIAVQEVLDQEEIEIMKAKAKNASTGLTQDATKENANAIRAMIKKVTGKQLTEAENALILPSTSNPTGEHGESYILPQDIRTLISKKIRQYKSLRDVLGYMPASALTGSFPIEDFETVTGLVDFTDGEEGTDDKEIKFKNIKYSLVEKAAFIKLSNTLLNLTDNALINYIVEVFSKKAVITENQMGIAALKKGKKAKALADWKALKSSINKDLDPAVLFGTVIVTNQDGFDVLDSALDANGRPILETNPANPTQSKFKGYIVEQFSNSLLPSVENKAPIFYGNLAEGVKFVDLDGQVAFATSSEAGFMSNTTIARLIEFIDVVQCDSSDKCYCYGELPIITSEGK
SIO_010081: RSJ16_RS00005
subclass of: SO_0000673
so part of: RSJ16_RS00005
location: join(34011..34354,1..820)
location: region:1-34354:1
so has part: feature:34011-34354:1:exon
so has part: feature:1-820:1:exon

WP_101508002.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34011-34354:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-820:1:exon

RSJ16_RS00010
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00010
old locus tag: RSJ16_00010
so part of: sequence
location: 849..1127
location: region:849-1127:1
so has part: feature:849-1127:1:exon
subclass of: SO_0000010

57933998
type: Gene
SIO_000068: ncbigene

position:849:1
position: 849
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1127:1
position: 1127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:849-1127:1:exon

RSJ16_RS00010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00010
old locus tag: RSJ16_00010
inference: COORDINATES: protein motif:HMM:NF016990.2
GO process: GO:0016032 - viral process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: head-tail connector protein
translation: MTLEELKSWIHVDFNDDDGKLEIIRCASIEYIEDALGRYNEKRAKQKLLVATLAEDMYEKNRYTVDDKDEKVRYIIKSIINQEQLIGDDFVK
SIO_010081: RSJ16_RS00010
subclass of: SO_0000673
so part of: RSJ16_RS00010
location: 849..1127
location: region:849-1127:1
so has part: feature:849-1127:1:exon

WP_101508003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:849-1127:1:exon

RSJ16_RS00015
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00015
old locus tag: RSJ16_00015
so part of: sequence
location: 1111..1437
location: region:1111-1437:1
so has part: feature:1111-1437:1:exon
subclass of: SO_0000010

57933999
type: Gene
SIO_000068: ncbigene

position:1111:1
position: 1111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1437:1
position: 1437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1111-1437:1:exon

RSJ16_RS00015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00015
old locus tag: RSJ16_00015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016048845.1
GO component: GO:0044423 - virion component [Evidence IEA]
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0019068 - virion assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage head closure protein
translation: MILLNSRITIKKLEKNVVNGRRQGIKETHLYTCWADILDLYGKELYEAINIKLENTIVFKVRYCNLIEKLRNKEDYIVEWNGRKYNIYDVDFMNYSKKFVKIKCNEVL
SIO_010081: RSJ16_RS00015
subclass of: SO_0000673
so part of: RSJ16_RS00015
location: 1111..1437
location: region:1111-1437:1
so has part: feature:1111-1437:1:exon

WP_101508004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1111-1437:1:exon

RSJ16_RS00020
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00020
old locus tag: RSJ16_00020
so part of: sequence
location: 1437..1877
location: region:1437-1877:1
so has part: feature:1437-1877:1:exon
subclass of: SO_0000010

57934000
type: Gene
SIO_000068: ncbigene

position:1877:1
position: 1877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1437-1877:1:exon

RSJ16_RS00020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00020
old locus tag: RSJ16_00020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011010263.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HK97 gp10 family phage protein
translation: MNIEMEFEGLDEIIKIAESLASESEVDNINKKILKECGDLAYQTVKPLIHKSKDNSKSGRKGSRPSGHASDNVPVPKFRTKKGEKYIVVGWEKSDNSNYYYMKMEEWGTSQRPPHHSFGVVNKMLGKQYDNIAIKEYDKLIKKLER
SIO_010081: RSJ16_RS00020
subclass of: SO_0000673
so part of: RSJ16_RS00020
location: 1437..1877
location: region:1437-1877:1
so has part: feature:1437-1877:1:exon

WP_237164317.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1437-1877:1:exon

RSJ16_RS00025
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00025
old locus tag: RSJ16_00025
so part of: sequence
location: 1882..2235
location: region:1882-2235:1
so has part: feature:1882-2235:1:exon
subclass of: SO_0000010

57934001
type: Gene
SIO_000068: ncbigene

position:1882:1
position: 1882
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2235:1
position: 2235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1882-2235:1:exon

RSJ16_RS00025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00025
old locus tag: RSJ16_00025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011010264.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENEDFDIIALVVKALESTNIQVFEGWYDEEINKTHITIHEYLEQDNEYEDDKARCIEHNIQLDIWSKDSLEAYNLKKQVRKLMIENDFRKTDSQDFYEVKTKIYHKAMRFTYNEFI
SIO_010081: RSJ16_RS00025
subclass of: SO_0000673
so part of: RSJ16_RS00025
location: 1882..2235
location: region:1882-2235:1
so has part: feature:1882-2235:1:exon

WP_101508005.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1882-2235:1:exon

RSJ16_RS00030
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00030
old locus tag: RSJ16_00030
so part of: sequence
location: 2272..2877
location: region:2272-2877:1
so has part: feature:2272-2877:1:exon
subclass of: SO_0000010

57934002
type: Gene
SIO_000068: ncbigene

position:2272:1
position: 2272
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2877:1
position: 2877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2272-2877:1:exon

RSJ16_RS00030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00030
old locus tag: RSJ16_00030
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003459456.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage tail protein
translation: MSETVVSSRRMGLRDISAALVEKNTATEYSATKIEKLARSISAKVTEKKKVEKLYSDDGTETVVEILESIEVEIELNDLSPKQESLLKGCIYDNGFLVDNQDDMANEIALGWRAKRTDKKYEFVWLYAGKFCEGGTETYETNQDKLKTQTPKLKGTFYPRQKDGNWRIRVNESYLLEENSDAKTAIQDWFSKVQEPVKKVS
SIO_010081: RSJ16_RS00030
subclass of: SO_0000673
so part of: RSJ16_RS00030
location: 2272..2877
location: region:2272-2877:1
so has part: feature:2272-2877:1:exon

WP_101508006.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2272-2877:1:exon

RSJ16_RS00035
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00035
old locus tag: RSJ16_00035
so part of: sequence
location: 3058..3363
location: region:3058-3363:1
so has part: feature:3058-3363:1:exon
subclass of: SO_0000010

57934003
type: Gene
SIO_000068: ncbigene

position:3058:1
position: 3058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3363:1
position: 3363
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3058-3363:1:exon

RSJ16_RS00035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00035
old locus tag: RSJ16_00035
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004459713.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIVVNNKEFDSGKMVRSKYKVYSKVRDELTGKENYDDEDLDKMVNALVVLFDNQFTEADINNEFEVSDIIFNFIRADLEVAEKLNKSIDKTKALFMKDKK
SIO_010081: RSJ16_RS00035
subclass of: SO_0000673
so part of: RSJ16_RS00035
location: 3058..3363
location: region:3058-3363:1
so has part: feature:3058-3363:1:exon

WP_057566211.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3058-3363:1:exon

RSJ16_RS00040
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00040
old locus tag: RSJ16_00040
so part of: sequence
location: 3441..3893
location: region:3441-3893:1
so has part: feature:3441-3893:1:exon
subclass of: SO_0000010

57934004
type: Gene
SIO_000068: ncbigene

position:3441:1
position: 3441
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3893:1
position: 3893
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3441-3893:1:exon

RSJ16_RS00040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00040
old locus tag: RSJ16_00040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDLIDKNEDNLIYINKLINIFFDYKIEVKELDQKEIYDILETYMLIEKYIEQVHAKINDVLSDEEIEESESAFDDYDKENGYEDEKNLRDISKYEISLKILYGIFDFARLKLKFSLKECLETNIFELLDYIDYSLKNKECIQEDYADIEA
SIO_010081: RSJ16_RS00040
subclass of: SO_0000673
so part of: RSJ16_RS00040
location: 3441..3893
location: region:3441-3893:1
so has part: feature:3441-3893:1:exon

WP_101508007.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3441-3893:1:exon

RSJ16_RS00045
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00045
old locus tag: RSJ16_00045
so part of: sequence
location: 3928..6867
location: region:3928-6867:1
so has part: feature:3928-6867:1:exon
subclass of: SO_0000010

57934005
type: Gene
SIO_000068: ncbigene

position:3928:1
position: 3928
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6867:1
position: 6867
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3928-6867:1:exon

RSJ16_RS00045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00045
old locus tag: RSJ16_00045
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003464211.1
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0016032 - viral process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage tail tape measure protein
translation: MAANIKIRANSSDFQKQMKEMSAELKKVGSSYSLAQTQARLFGSTTDVLKSKQSELTSKMQIQNRMIEAQTRNISKLNSDISKQKEKQSSLADKIEKTNEKYKESVSQTGKNSEESKKLKQELDNLKKEYEQNDRAIDSNTKKLDNAEIKLNNSKKALLENEKALQEVNKELEKSKLDKFSEGLEKSSQKAEGISNKMKPASTAITGIGTAAAMASIGFEDGMAKVSTIADTTQVPLGDLRKGILDLSDQTGISSEEIANNVYDAISAGQQTGDAVNFVSNSTKLAKAGFAEAGQSLDLLTTIMNSYGLKAQDVTKVSDTLIQTQNLGKVTVGQLSADMGKVIPTAKSLGVNLEQVASGYAIMTSKGIKSAETTTYMNSMLNELGKSGTAANKALKKASGKSFPELIKSGKSLGDILAMMEKDAKKSGKSLSDMFGSAEAGKAALVLSSKSGKEFNDMLGKMKDSAGSTETAFNKVNSATSQGLRKALNSAKNALIGFGDVISPFISLVAKGIANITKAISGMSGTQKKLVVGLGAAFVATNLAIGGFAKLSKGLSNNIKFMQKSGKAIKDYAKATRDGETKLVKFGKGIVKVSRNIKDFTVNIGKKAVQGLKSFGKGLLTVTKNLGKFAISIGKTAVKGILAFGKGLLTVTKNLGKLTLAILKNSAQLTKNGLMWLGNKAKMLAFKGAQLAVTGATKAMTLAQKGLNLVMSMNPIGIVITALVALGAVFVTLYNKCDWFRNGVNAVWSKVKSIFVGFANFFKGAFHRDFTKTFGLLGVPLNHFFSVVGTVWNGIKGVFNGVLTFLSGVFTGNWRKIFSGLKQIIASIFGTIGGIIKAPINAAISGINSAIRAVNRISFNIPNWVPVFGGKHFGIHLPQIPALAEGGIVTKSTLALVGEGKEHEAVIPLSKLDKLVTNSVQKVLDSRGNKAYEKDSREPKLIQVVLQVGNKDMAEAIFDEFGNLISKNQRSRGIARGHV
SIO_010081: RSJ16_RS00045
subclass of: SO_0000673
so part of: RSJ16_RS00045
location: 3928..6867
location: region:3928-6867:1
so has part: feature:3928-6867:1:exon

WP_101508008.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3928-6867:1:exon

RSJ16_RS00050
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00050
old locus tag: RSJ16_00050
so part of: sequence
location: 6868..7578
location: region:6868-7578:1
so has part: feature:6868-7578:1:exon
subclass of: SO_0000010

57934006
type: Gene
SIO_000068: ncbigene

position:6868:1
position: 6868
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7578:1
position: 7578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6868-7578:1:exon

RSJ16_RS00050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00050
old locus tag: RSJ16_00050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003464184.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage tail family protein
translation: MFSKYFLIFNNLNSKFDLGLSIVKRPNIPSPSKNKIAKEIPGRDGSVYENMGGYKDIVIPVEFNFIEKNNLKERFRQIKLWINEIQDNKLIFNDDPEWFYKVVDVKLNGDFETILRRKGKFRIDFTCRAYLYNLDADEFIEIHNNDNLYNYYLESKPQIYIQGNGEVKVSINNRKFTVPVQDYIYIDSELELVFKTTDNYFNLGTGAFPKLNKGANLIQFEGNIQVLKIKPRWRCL
SIO_010081: RSJ16_RS00050
subclass of: SO_0000673
so part of: RSJ16_RS00050
location: 6868..7578
location: region:6868-7578:1
so has part: feature:6868-7578:1:exon

WP_101508009.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6868-7578:1:exon

RSJ16_RS00055
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00055
old locus tag: RSJ16_00055
so part of: sequence
location: 7578..10133
location: region:7578-10133:1
so has part: feature:7578-10133:1:exon
subclass of: SO_0000010

57934007
type: Gene
SIO_000068: ncbigene

position:10133:1
position: 10133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7578-10133:1:exon

RSJ16_RS00055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00055
old locus tag: RSJ16_00055
inference: COORDINATES: protein motif:HMM:TIGR01665.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage tail spike protein
translation: MQCYKPSNTNFDKNGDIKLQPSSAILKVELNGICEIEFEHSYDKEKRWKTIENLGIVKCDVCYSKNQQLFRIYDVAKGMFGVKVKARHIYFDLIDKIIVDTRAVNFNCETALNIILTGTKFKGHSDISLTNTAYFVKMNALSAISGDSDNTLLNRWGGEVIADNFDVYVNHRIGGDYGVKVKYSRNMLDIDLAENTDEIATRIYPQAYNGIMLPELFVDSPLINKYPIVKERHMVFEDLKLKEDCSGEDEQGFETRESLYEAMRQRVKEAFKSGLDKTKVSGKVDIAILENTEEYKGFKKLVNVGIGDTLTVEHQNIGVDLTTRCVALEWDILNKKYNSITLGELNTDYFDRQDLAKEKLDSILNSNGNVKAESLEGVVSALNTKFQALRDIAQPQQVKAMLFEDRVQGSKTYGALALGSMGLMIANKRTLDDKDWQWNTFIGGGYVYADWLIGKLKTVLIENLDGSLQIDLSKTGGLMTKKNGVNAVELNGQNINLYDWDGEGDPVGKLYSSRLNSNASMPGVVLANALNCFLSLSYEKNGTYYSYIRCDKDNIDGSTNVPVTILEDTEFKGSEFWLKYGTSSLYNSTTNNFVNKVLNDFVVVERTNNFSRLALKKNRLTLYDVLANGAPEYASFSPEQTCFSKDGNPYASFCTEFFNIYQNGEAIFYANKAGNLVSKRKLFTEGGLVVSQDFIVQGNKNCVQKTEKYGERLFYSVEDCESYLTDRSMHSLTVEKVKHDDKVTYERVVILDNIFKDSVNLELDYTVEIIKQGWGDYRIKEQTKDYFIVESDRKDFNFKYVVTAKRKGFEKERNKEVFLDALKENNLNTDIVENKEYWRLYTEEGDSIGNK
SIO_010081: RSJ16_RS00055
subclass of: SO_0000673
so part of: RSJ16_RS00055
location: 7578..10133
location: region:7578-10133:1
so has part: feature:7578-10133:1:exon

WP_158645304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7578-10133:1:exon

RSJ16_RS00060
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00060
old locus tag: RSJ16_00060
so part of: sequence
location: 10120..12738
location: region:10120-12738:1
so has part: feature:10120-12738:1:exon
subclass of: SO_0000010

57934008
type: Gene
SIO_000068: ncbigene

position:10120:1
position: 10120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12738:1
position: 12738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10120-12738:1:exon

RSJ16_RS00060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00060
old locus tag: RSJ16_00060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: pyocin knob domain-containing protein
translation: MAINNFHFKLDIEREDHIPKFRLKQYDTAIFYASLYKNGLPYHFEGEKIKMFVKKSDGTIVYQEDNVTIQDDEVKINVKNQALTASGLTYAELELKSSTGQVTTATFLFEVKEKVGSDKAIESITDICTLEKLDRYVGQAKKELDKFKQDLSKLEDLVANKDKLEGQNTEAKVNIKGLERVLEQASNIVDNGGKKITGNNVISESSNGYIQNLKLTGNSLVNLIKIKDPFTGSGITAYTHIVALKNLEVNKTYTYIPLNVPSFIKGMYLGNSTSTENLIKYTTDIKPTTFTVTHPIELDTIMPHFYGVNNTNLTTEQRNELTQKVKLMILEGDYTKNPPGYFEGLKSVGDGIDEIEILSNNLGNMLDKSKIIKGGYLNKNNGNIQQNTNSFYTDYFIEINSNFKNLKIRNNQVAIFTYYDNNKNFISGEESTSIQYSSIPKNAKYMKFSFYNRLNIIDSLYVGFSKDNSKINIKYKQDKTSILFRNNNNWSKPILRKWDTIEKYLDGNYYYRKQCMELTINGSENWVFDGDVGNTIRCYLRNSNLSPGLVTSDRFNSIQNYVLDEEHIYASEGLLWVFLNKSKATDLNTFKNYFKGTPTTVVCPMIKEEIYECLDISTRSFNPQTLLSVNSGVIDPGVEYSIPSSFVSSDSSISEKLENIDLNNFDLNLIKLPGLNLKDSLDAKYLNINKGDIFNFNETIEPGRYSVGAETTLPGAPFPNSIYGSLIVLPRRGKERQQIFLTIDGYISSRFLNYQGNWSDWSRIPKLSDFEGRNSQTNGYQKFPNGTIIQWGSTVIKFDGYRAKGYLYYPIAFKEYVHCTGNVASNSYGGYCETTGSVVGDNLTRGYAEALDFESKNENGKDVRIQWIAIGR
SIO_010081: RSJ16_RS00060
subclass of: SO_0000673
so part of: RSJ16_RS00060
location: 10120..12738
location: region:10120-12738:1
so has part: feature:10120-12738:1:exon

WP_101508011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10120-12738:1:exon

RSJ16_RS00065
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00065
old locus tag: RSJ16_00065
so part of: sequence
location: 12750..13253
location: region:12750-13253:1
so has part: feature:12750-13253:1:exon
subclass of: SO_0000010

57934009
type: Gene
SIO_000068: ncbigene

position:12750:1
position: 12750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13253:1
position: 13253
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12750-13253:1:exon

RSJ16_RS00065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00065
old locus tag: RSJ16_00065
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIYLHYKEDSFTFNGFYLDEYNEVIPSPNIMINQQLWEYLRCLTNDFKLKESFELKELYTIEDKDIFEIIPFEYKKPKPTRTDLLEKQNAFLIKESLEKDIQIKELNINLAQATLKSINKDIEINNLNTNMAQTTLNLVNKDIQVKGIEKDIANLILKSLGGNLNG
SIO_010081: RSJ16_RS00065
subclass of: SO_0000673
so part of: RSJ16_RS00065
location: 12750..13253
location: region:12750-13253:1
so has part: feature:12750-13253:1:exon

WP_101508012.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12750-13253:1:exon

RSJ16_RS00070
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00070
old locus tag: RSJ16_00070
so part of: sequence
location: 13246..13434
location: region:13246-13434:1
so has part: feature:13246-13434:1:exon
subclass of: SO_0000010

57934010
type: Gene
SIO_000068: ncbigene

position:13246:1
position: 13246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13434:1
position: 13434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13246-13434:1:exon

RSJ16_RS00070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00070
old locus tag: RSJ16_00070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003702371.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: XkdX family protein
translation: MDKWYFEMANKYFDLKIYKVDDVRLFVEAERITKEQFKEITGEDYDKPTNNLPIKITEDKQI
SIO_010081: RSJ16_RS00070
subclass of: SO_0000673
so part of: RSJ16_RS00070
location: 13246..13434
location: region:13246-13434:1
so has part: feature:13246-13434:1:exon

WP_101508013.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13246-13434:1:exon

RSJ16_RS00075
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00075
old locus tag: RSJ16_00075
so part of: sequence
location: 13489..13722
location: region:13489-13722:1
so has part: feature:13489-13722:1:exon
subclass of: SO_0000010

57934011
type: Gene
SIO_000068: ncbigene

position:13489:1
position: 13489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13722:1
position: 13722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13489-13722:1:exon

RSJ16_RS00075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00075
old locus tag: RSJ16_00075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003478944.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hemolysin XhlA family protein
translation: MNNEVADHMLEAHERRINNHSERLDKLEQSDAKRDIQIDNLCKSIEGLVNTLKWGFGFICSGVIGFFFYAIQNHLFK
SIO_010081: RSJ16_RS00075
subclass of: SO_0000673
so part of: RSJ16_RS00075
location: 13489..13722
location: region:13489-13722:1
so has part: feature:13489-13722:1:exon

WP_101508014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13489-13722:1:exon

RSJ16_RS00080
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00080
old locus tag: RSJ16_00080
so part of: sequence
location: 13740..13958
location: region:13740-13958:1
so has part: feature:13740-13958:1:exon
subclass of: SO_0000010

57934012
type: Gene
SIO_000068: ncbigene

position:13740:1
position: 13740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13958:1
position: 13958
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13740-13958:1:exon

RSJ16_RS00080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00080
old locus tag: RSJ16_00080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003461851.1
GO function: GO:0140911 - pore-forming activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage holin
translation: MKSRLKNPYFWLGLGGVIFSSAGIDFKTLTSWNLLGEALLSILANPVAVVAVIAALVGVCVDPSSKGLKDNK
SIO_010081: RSJ16_RS00080
subclass of: SO_0000673
so part of: RSJ16_RS00080
location: 13740..13958
location: region:13740-13958:1
so has part: feature:13740-13958:1:exon

WP_021121865.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13740-13958:1:exon

RSJ16_RS00085
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00085
old locus tag: RSJ16_00085
so part of: sequence
location: 14113..15057
location: region:14113-15057:1
so has part: feature:14113-15057:1:exon
subclass of: SO_0000010

57934013
type: Gene
SIO_000068: ncbigene

position:14113:1
position: 14113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15057:1
position: 15057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14113-15057:1:exon

RSJ16_RS00085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00085
old locus tag: RSJ16_00085
EC number: 3.5.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010074649.1
GO function: GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO process: GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetylmuramoyl-L-alanine amidase
translation: MLDIKREISQYNHYEGNNVEYIVIHYTGNIGDTAKNNADYFFGGNRNASAHYFVDDNEIYQVVEEYNGAWHCGDGHNESGINNRNSIAIEMCGTDNGRISEKTVENTLELTKHLMKKYGIDKDHVVRHYDASRKNCPSAFNVNNWSRWWNFKDRLLKQNSSNNQSDYKNGEYNCNAKIIADVLNVRDSRPQNGNLGNVIGKLKGGQIIKVGYCLNNWFGVVLNGKQGFISGKYIQLSTSNEGFKNGDYSGRKARVTADVLNVRYNRGTQYNVIGQVKHGDIVNLQYCLNGWISIEGFKGNKGLGYVSSKFLELI
SIO_010081: RSJ16_RS00085
subclass of: SO_0000673
so part of: RSJ16_RS00085
location: 14113..15057
location: region:14113-15057:1
so has part: feature:14113-15057:1:exon

WP_101508015.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14113-15057:1:exon

RSJ16_RS00090
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00090
old locus tag: RSJ16_00090
so part of: sequence
location: complement(15173..15355)
location: region:15173-15355:-1
so has part: feature:15173-15355:-1:exon
subclass of: SO_0000010

57934014
type: Gene
SIO_000068: ncbigene

position:15173:-1
position: 15173
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15355:-1
position: 15355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15173-15355:-1:exon

RSJ16_RS00090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00090
old locus tag: RSJ16_00090
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: PemI
translation: MDPVEKKISFNKGGNGGFTLKLGIPIDFANEVGLTKEENKVILTLENGAIVIRKKENEEN
SIO_010081: RSJ16_RS00090
subclass of: SO_0000673
so part of: RSJ16_RS00090
location: complement(15173..15355)
location: region:15173-15355:-1
so has part: feature:15173-15355:-1:exon

WP_101508016.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15173-15355:-1:exon

RSJ16_RS00095
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00095
old locus tag: RSJ16_00095
so part of: sequence
location: complement(15507..15734)
location: region:15507-15734:-1
so has part: feature:15507-15734:-1:exon
subclass of: SO_0000010

57934015
type: Gene
SIO_000068: ncbigene

position:15507:-1
position: 15507
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15734:-1
position: 15734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15507-15734:-1:exon

RSJ16_RS00095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00095
old locus tag: RSJ16_00095
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKIRKSFKKVLTLPYGGSIIIYRKGVNKVSRVERKKAKKEKATKKLIMIALYIGNIISFINSVFDLIENLKKHF
SIO_010081: RSJ16_RS00095
subclass of: SO_0000673
so part of: RSJ16_RS00095
location: complement(15507..15734)
location: region:15507-15734:-1
so has part: feature:15507-15734:-1:exon

WP_057575616.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15507-15734:-1:exon

RSJ16_RS00100
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00100
old locus tag: RSJ16_00100
so part of: sequence
location: complement(16029..16544)
location: region:16029-16544:-1
so has part: feature:16029-16544:-1:exon
subclass of: SO_0000010

57934016
type: Gene
SIO_000068: ncbigene

position:16029:-1
position: 16029
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16544:-1
position: 16544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16029-16544:-1:exon

RSJ16_RS00100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00100
old locus tag: RSJ16_00100
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGIYSETDLIREVDCEKCGKKYTQRLYEYIGGAKYWSGYCECTPTIRDSTVELLKSQIRILNCDIIKDNWNYEVINSINNELKQLTNKKLFKYSIYNEFRTDGKQNKYIYIVKYPFKKNIANYIGEDIKKFYRETKNISIENLFIEKVLNFSKEDFAHYLSYLCSLREKNR
SIO_010081: RSJ16_RS00100
subclass of: SO_0000673
so part of: RSJ16_RS00100
location: complement(16029..16544)
location: region:16029-16544:-1
so has part: feature:16029-16544:-1:exon

WP_101508017.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16029-16544:-1:exon

RSJ16_RS18110
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS18110
so part of: sequence
location: complement(16636..16767)
location: region:16636-16767:-1
so has part: feature:16636-16767:-1:exon
subclass of: SO_0000010

74354501
type: Gene
SIO_000068: ncbigene

position:16636:-1
position: 16636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16767:-1
position: 16767
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16636-16767:-1:exon

RSJ16_RS18110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS18110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDNFFFIFIRYGRRKNIVKTTHTIYLEETDLKAISSIKNNYR
SIO_010081: RSJ16_RS18110
subclass of: SO_0000673
so part of: RSJ16_RS18110
location: complement(16636..16767)
location: region:16636-16767:-1
so has part: feature:16636-16767:-1:exon

WP_257790811.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16636-16767:-1:exon

RSJ16_RS00105
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00105
old locus tag: RSJ16_00105
so part of: sequence
location: 16864..17646
location: region:16864-17646:1
so has part: feature:16864-17646:1:exon
subclass of: SO_0000010

57934017
type: Gene
SIO_000068: ncbigene

position:16864:1
position: 16864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17646:1
position: 17646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16864-17646:1:exon

RSJ16_RS00105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00105
old locus tag: RSJ16_00105
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MELKDFSHLYEYRPNYMHYIKDEYDIGILASGQKISDIYYILNMGKINLEIYVNDEYIEENKEDENMYKFMKSTNLFNALSYYNYALDYSWQVVYFYASNNNTLDLIYDNLYEKFSKYCNKSEINEILNFSKSLAEKDKKNNIDFLIKHIDSFLSNENTEYIRKMYNYLKHRGMIYTSELYNDSNHLPISVEGQKLKKLYTRYIDPDNLFKKLCQYHNAFINYIDVIINKIIPEGYTEKKSANFNEIVKFVNSHQNSMKK
SIO_010081: RSJ16_RS00105
subclass of: SO_0000673
so part of: RSJ16_RS00105
location: 16864..17646
location: region:16864-17646:1
so has part: feature:16864-17646:1:exon

WP_101508018.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16864-17646:1:exon

RSJ16_RS00110
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00110
old locus tag: RSJ16_00110
so part of: sequence
location: 17709..18380
location: region:17709-18380:1
so has part: feature:17709-18380:1:exon
subclass of: SO_0000010

57934018
type: Gene
SIO_000068: ncbigene

position:17709:1
position: 17709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18380:1
position: 18380
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17709-18380:1:exon

RSJ16_RS00110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00110
old locus tag: RSJ16_00110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLFDLFKKNISNEDSGINIEFSLKFVKIILLISICFNFMTLKFFQETVLELFKVLELILILILDFLKHISSEYSGFLGFTGSVLGGCIAILVYKLQVKNQSSKEIKRLMFLTLDTYKSIKLLDLNGDLRMLRVLDSTRVVKFKEKHSAIVYDKEWSKLISNISEFEDARALRRWFYCIEQMLIKEPDALQEMYVSIESILRSYGYSKELEKIKNEFYQESQK
SIO_010081: RSJ16_RS00110
subclass of: SO_0000673
so part of: RSJ16_RS00110
location: 17709..18380
location: region:17709-18380:1
so has part: feature:17709-18380:1:exon

WP_101508019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17709-18380:1:exon

RSJ16_RS00115
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00115
old locus tag: RSJ16_00115
so part of: sequence
location: complement(18479..18853)
location: region:18479-18853:-1
so has part: feature:18479-18853:-1:exon
subclass of: SO_0000010

57934019
type: Gene
SIO_000068: ncbigene

position:18479:-1
position: 18479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18853:-1
position: 18853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18479-18853:-1:exon

RSJ16_RS00115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00115
old locus tag: RSJ16_00115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALDIFKEEAKDIRIRKNDYQTTVDKVIENNIKEDDISIGTLNLLDMEEEKKIVKTPQTIYLEEDDLKLLKAVSSIKNTTIGKTINNIIKVAVETTKASLPADFDIDKQVLKYDKDNKVKKNKK
SIO_010081: RSJ16_RS00115
subclass of: SO_0000673
so part of: RSJ16_RS00115
location: complement(18479..18853)
location: region:18479-18853:-1
so has part: feature:18479-18853:-1:exon

WP_101508020.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18479-18853:-1:exon

RSJ16_RS00120
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00120
old locus tag: RSJ16_00120
so part of: sequence
location: complement(18855..19661)
location: region:18855-19661:-1
so has part: feature:18855-19661:-1:exon
subclass of: SO_0000010

57934020
type: Gene
SIO_000068: ncbigene

position:18855:-1
position: 18855
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19661:-1
position: 19661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18855-19661:-1:exon

RSJ16_RS00120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00120
old locus tag: RSJ16_00120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018590489.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKICSFFNVKGGVGKTTLTILTAMKLSKEGKKVLLIDADTQANLTQFLYKVVHEDKTLFQMLTENATADEVILKSILDRFENIDLIPSDISLSVLSEYLSTQMGREKAVWRWFKNNIEAVEKYDYIFVDLSPSYDLIARNFMLISDSIITPIEYQDIASIRGCELFYQKFRQDLEFLDIRTNVKRAVVINSYTSRKLSTGDLFNNYLNEFEDIKRDLLESKISDTTVVKNAILNNMDLEDYCRKQKKAHKVREEFNNLIKELEEKEVL
SIO_010081: RSJ16_RS00120
subclass of: SO_0000673
so part of: RSJ16_RS00120
location: complement(18855..19661)
location: region:18855-19661:-1
so has part: feature:18855-19661:-1:exon

WP_101508021.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18855-19661:-1:exon

RSJ16_RS00125
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00125
old locus tag: RSJ16_00125
so part of: sequence
location: complement(20012..21241)
location: region:20012-21241:-1
so has part: feature:20012-21241:-1:exon
subclass of: SO_0000010

57934021
type: Gene
SIO_000068: ncbigene

position:20012:-1
position: 20012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21241:-1
position: 21241
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20012-21241:-1:exon

RSJ16_RS00125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00125
old locus tag: RSJ16_00125
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MYLIEELENDKILMKNNILVKARYNLSLVENRIFLFMLYKLQRESKGILKCEISHKEFKDIVKFKEKNTVKGILEVLEELRKKPIFFKEEKKNKKGSLWGAYGFINGYYYDDELGSFNIEASEKIHEILKEYLKMGYTPINVQIWLSLNNSYAQRFYDLLRLWSNTKTVITYKVDEIKELLMLEDKYDRYNDFKRRVITPAIKELNNTGYFEIDIKENKIGRKVDSIDFIVKDLDKRKYFTNVKEPKVLEVKREEIFEDNPVTNNQKKKEELKDFYIPNKKLFTAKTLDNFKKDFSNYDFKDSTYKRLLQEAILVTLEKDDEEKIKVKSYNYFKKTLENKINDIQNKKDKPKSVNTRFHNINQSFNKYNAEELERMLIENQKSKFEVHSNNSNEDIISDNLKLDEDKIG
SIO_010081: RSJ16_RS00125
subclass of: SO_0000673
so part of: RSJ16_RS00125
location: complement(20012..21241)
location: region:20012-21241:-1
so has part: feature:20012-21241:-1:exon

WP_101508022.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20012-21241:-1:exon

RSJ16_RS00130
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00130
old locus tag: RSJ16_00130
so part of: sequence
location: 21688..22065
location: region:21688-22065:1
so has part: feature:21688-22065:1:exon
subclass of: SO_0000010

57934022
type: Gene
SIO_000068: ncbigene

position:21688:1
position: 21688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22065:1
position: 22065
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21688-22065:1:exon

RSJ16_RS00130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00130
old locus tag: RSJ16_00130
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKIIILVSLIACSMLIIVGCGNKTVLGETHEESVKNGLGEEIGTRLVVESNEKDITDKNLIQFYNDVVKNNDYKYITVDLGNDEGIMFNNDNMFIKGKIDKDGMISETIKMGQIDKDKIKYTED
SIO_010081: RSJ16_RS00130
subclass of: SO_0000673
so part of: RSJ16_RS00130
location: 21688..22065
location: region:21688-22065:1
so has part: feature:21688-22065:1:exon

WP_101508023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21688-22065:1:exon

RSJ16_RS00135
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
gene: lexA
locus tag: RSJ16_RS00135
old locus tag: RSJ16_00135
so part of: sequence
location: 22210..22839
location: region:22210-22839:1
so has part: feature:22210-22839:1:exon
subclass of: SO_0000010

57934023
type: Gene
SIO_000068: ncbigene

position:22210:1
position: 22210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22839:1
position: 22839
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22210-22839:1:exon

RSJ16_RS00135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
gene: lexA
locus tag: RSJ16_RS00135
old locus tag: RSJ16_00135
EC number: 3.4.21.88
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009897067.1
GO function: GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO process: GO:0006282 - regulation of DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transcriptional repressor LexA
translation: MYLDLTNKQIKIIKHIKDMLTQKGYPPTIRELCQHVGVNSTSHVHSNLNKLEKLGYIKRDPSKPRAIELLEKENFSNGLHQEVIDLPVIKQNIAVKPIDSDDNIEEYMKLPSNLVIGKESFIMKVNDKSMVNVGILEDDYIIVDKSYNKLNSNIVVLVVDNKIIIRRFFSQEDGYIRLESENECIDDIRVHKSKADILGVVRGNFRVIK
SIO_010081: RSJ16_RS00135
subclass of: SO_0000673
so part of: RSJ16_RS00135
location: 22210..22839
location: region:22210-22839:1
so has part: feature:22210-22839:1:exon

WP_101508024.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22210-22839:1:exon

RSJ16_RS18115
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS18115
so part of: sequence
location: 22875..23003
location: region:22875-23003:1
so has part: feature:22875-23003:1:exon
subclass of: SO_0000010

74354502
type: Gene
SIO_000068: ncbigene

position:22875:1
position: 22875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23003:1
position: 23003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22875-23003:1:exon

RSJ16_RS18115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS18115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKDDILELINIATKLKRIKNNDFFLIKGMIIERSLNKKDCN
SIO_010081: RSJ16_RS18115
subclass of: SO_0000673
so part of: RSJ16_RS18115
location: 22875..23003
location: region:22875-23003:1
so has part: feature:22875-23003:1:exon

WP_257790809.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22875-23003:1:exon

RSJ16_RS00140
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00140
old locus tag: RSJ16_00140
so part of: sequence
location: complement(23014..23355)
location: region:23014-23355:-1
so has part: feature:23014-23355:-1:exon
subclass of: SO_0000010

57934024
type: Gene
SIO_000068: ncbigene

position:23014:-1
position: 23014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23355:-1
position: 23355
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23014-23355:-1:exon

RSJ16_RS00140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00140
old locus tag: RSJ16_00140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009894553.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MNERLKELRNKKGLSQKAFGEIIKLSPDMISLLEKGKRNFTERVINDICREFDVNKEWLETGKGEMFIDILSQIEEFNNADPDIQELVRMYIQLDDVSKAYYKKRMLEELNRK
SIO_010081: RSJ16_RS00140
subclass of: SO_0000673
so part of: RSJ16_RS00140
location: complement(23014..23355)
location: region:23014-23355:-1
so has part: feature:23014-23355:-1:exon

WP_101508025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23014-23355:-1:exon

RSJ16_RS17640
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS17640
so part of: sequence
location: 23529..23684
location: region:23529-23684:1
so has part: feature:23529-23684:1:exon
subclass of: SO_0000010

57937512
type: Gene
SIO_000068: ncbigene

position:23529:1
position: 23529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23684:1
position: 23684
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23529-23684:1:exon

RSJ16_RS17640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS17640
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSLSKKSIEEKNDLKDFLKIASELKANNKILYEGYKNRMIGALEAQKILKI
SIO_010081: RSJ16_RS17640
subclass of: SO_0000673
so part of: RSJ16_RS17640
location: 23529..23684
location: region:23529-23684:1
so has part: feature:23529-23684:1:exon

WP_158645305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23529-23684:1:exon

RSJ16_RS00145
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00145
old locus tag: RSJ16_00145
so part of: sequence
location: 23696..24505
location: region:23696-24505:1
so has part: feature:23696-24505:1:exon
subclass of: SO_0000010

57934025
type: Gene
SIO_000068: ncbigene

position:23696:1
position: 23696
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24505:1
position: 24505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23696-24505:1:exon

RSJ16_RS00145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00145
old locus tag: RSJ16_00145
inference: COORDINATES: protein motif:HMM:TIGR02681.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ORF6C domain-containing protein
translation: MNHIVKTENENLVKIESIEGQLLVSSKKIAEHFEKEHKHVLEKIDSKRRELNKSVENSADINNLKIFFLDNFLEDFYIDGKGRQQRQVLLTKDGFSFITMGFTGLKADAWKLKYIEAFNKMEQELIENKQYQYKNLSPEMKALLTHDVKIQEMQKEVTTVRTELIDFKEEIPLFAVECEEITRLVRKTGTEVLNGKNSNAYRDKSLRSKVYSDIYRQLRREFGVRSYKAIKRRQLDQALEAVESYKLPTYLIEEIELANKFKDVEGLVC
SIO_010081: RSJ16_RS00145
subclass of: SO_0000673
so part of: RSJ16_RS00145
location: 23696..24505
location: region:23696-24505:1
so has part: feature:23696-24505:1:exon

WP_101508026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23696-24505:1:exon

RSJ16_RS00150
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00150
old locus tag: RSJ16_00150
so part of: sequence
location: 24499..24732
location: region:24499-24732:1
so has part: feature:24499-24732:1:exon
subclass of: SO_0000010

57934026
type: Gene
SIO_000068: ncbigene

position:24499:1
position: 24499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24732:1
position: 24732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24499-24732:1:exon

RSJ16_RS00150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00150
old locus tag: RSJ16_00150
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKQVISELKCFERKINNLEESIDTEDLNQIEIEFSNIKNEFEALQEAIYGASEDLKDIDYTMFNVERFLPITIVIS
SIO_010081: RSJ16_RS00150
subclass of: SO_0000673
so part of: RSJ16_RS00150
location: 24499..24732
location: region:24499-24732:1
so has part: feature:24499-24732:1:exon

WP_101508027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24499-24732:1:exon

RSJ16_RS17925
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS17925
old locus tag: RSJ16_00155
so part of: sequence
location: 24742..25503
location: region:24742-25503:1
so has part: feature:24742-25503:1:exon
subclass of: SO_0000010

70360064
type: Gene
SIO_000068: ncbigene

position:24742:1
position: 24742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25503:1
position: 25503
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24742-25503:1:exon

RSJ16_RS17925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS17925
old locus tag: RSJ16_00155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011968235.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conserved phage C-terminal domain-containing protein
translation: MKRGFKGIWIPKEIWLNEVLSIQEKVFLVEIDSLDNDDDGCFASNDYFSTFFKLSKNRCSEIIKSLEKKGFISIEYIYKQNSKAIDKRVIKLFEKPKRGIRDTDRDTRKTEEGYSEKCEDNNIYLNNIINNNIYSLVIDKLNSLANKNYKSSSRKTQQLIRARLNEGFKLEDFYKVIENKVYTWKDDSKMDQYLRPATLFGTKFESYLNEKIKKEVDKFGAFSEYERQMDTEYKETVSSEEAEREAKKLGIEL
SIO_010081: RSJ16_RS17925
subclass of: SO_0000673
so part of: RSJ16_RS17925
location: 24742..25503
location: region:24742-25503:1
so has part: feature:24742-25503:1:exon

WP_237164314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24742-25503:1:exon

RSJ16_RS00160
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00160
old locus tag: RSJ16_00160
so part of: sequence
location: 25493..26185
location: region:25493-26185:1
so has part: feature:25493-26185:1:exon
subclass of: SO_0000010

57934028
type: Gene
SIO_000068: ncbigene

position:25493:1
position: 25493
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26185:1
position: 26185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25493-26185:1:exon

RSJ16_RS00160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00160
old locus tag: RSJ16_00160
inference: COORDINATES: protein motif:HMM:NF012529.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MNYKCNQCKDKGYIFIDDTVKFCECREIKLAKERLEKSGIADRVKTNTFKNYKVNNIDRENARNICIKYITDFNKEKALLLQGQVGGGKTHLAIATCNKLLEKYSVKYMSYTKDINELKFNMTDTEFYNKKIQEYRDTTILFIDDLFKGFEKGDYTKSRAELRIMYDIINYRYDNKKSMIITTELSISKMLDLDEALASRIIEMTNNFETNIKYRFEFKGKELNYRIYGV
SIO_010081: RSJ16_RS00160
subclass of: SO_0000673
so part of: RSJ16_RS00160
location: 25493..26185
location: region:25493-26185:1
so has part: feature:25493-26185:1:exon

WP_158645306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25493-26185:1:exon

RSJ16_RS18120
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS18120
so part of: sequence
location: 26190..26321
location: region:26190-26321:1
so has part: feature:26190-26321:1:exon
subclass of: SO_0000010

74354503
type: Gene
SIO_000068: ncbigene

position:26190:1
position: 26190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26321:1
position: 26321
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26190-26321:1:exon

RSJ16_RS18120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS18120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015994388.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNILKEADNLRKIAETVAQKRGITVQEAWDEAIKEFKRRNNLI
SIO_010081: RSJ16_RS18120
subclass of: SO_0000673
so part of: RSJ16_RS18120
location: 26190..26321
location: region:26190-26321:1
so has part: feature:26190-26321:1:exon

WP_257790810.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26190-26321:1:exon

RSJ16_RS17645
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS17645
so part of: sequence
location: 26338..26496
location: region:26338-26496:1
so has part: feature:26338-26496:1:exon
subclass of: SO_0000010

57937513
type: Gene
SIO_000068: ncbigene

position:26338:1
position: 26338
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26496:1
position: 26496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26338-26496:1:exon

RSJ16_RS17645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS17645
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKHGVKLNRKHKEFLSKLKLDPKDYLLERQNESEYRFINIKTGKVEKFNLEG
SIO_010081: RSJ16_RS17645
subclass of: SO_0000673
so part of: RSJ16_RS17645
location: 26338..26496
location: region:26338-26496:1
so has part: feature:26338-26496:1:exon

WP_158645307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26338-26496:1:exon

RSJ16_RS00165
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00165
old locus tag: RSJ16_00165
so part of: sequence
location: 26499..26897
location: region:26499-26897:1
so has part: feature:26499-26897:1:exon
subclass of: SO_0000010

57934029
type: Gene
SIO_000068: ncbigene

position:26499:1
position: 26499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26897:1
position: 26897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26499-26897:1:exon

RSJ16_RS00165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00165
old locus tag: RSJ16_00165
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVFMGLHTPKEVENIKNKYKRIGYKEAEEKYEKEIKSIMDENETIITNHRQRNKKLVNDLKDMNNHLLGLSTDLKAKDKQINILRFFLECECDKEIKRLEAIAKRTRKPRVKKKCENRIIDYKQRKIAFEVK
SIO_010081: RSJ16_RS00165
subclass of: SO_0000673
so part of: RSJ16_RS00165
location: 26499..26897
location: region:26499-26897:1
so has part: feature:26499-26897:1:exon

WP_101508029.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26499-26897:1:exon

RSJ16_RS00170
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00170
old locus tag: RSJ16_00170
so part of: sequence
location: 26936..27187
location: region:26936-27187:1
so has part: feature:26936-27187:1:exon
subclass of: SO_0000010

57934030
type: Gene
SIO_000068: ncbigene

position:26936:1
position: 26936
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27187:1
position: 27187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26936-27187:1:exon

RSJ16_RS00170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00170
old locus tag: RSJ16_00170
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDIELLENIEQFKQLKKGDIILVRWNDYYIKHNKNIKPIMLYEIPKILGNEVICQIRNNHYFNYDIYLKRKSVALEVYKVSIK
SIO_010081: RSJ16_RS00170
subclass of: SO_0000673
so part of: RSJ16_RS00170
location: 26936..27187
location: region:26936-27187:1
so has part: feature:26936-27187:1:exon

WP_101508030.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26936-27187:1:exon

RSJ16_RS00175
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00175
old locus tag: RSJ16_00175
so part of: sequence
location: 27283..27795
location: region:27283-27795:1
so has part: feature:27283-27795:1:exon
subclass of: SO_0000010

57934031
type: Gene
SIO_000068: ncbigene

position:27283:1
position: 27283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27795:1
position: 27795
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27283-27795:1:exon

RSJ16_RS00175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00175
old locus tag: RSJ16_00175
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNEIEKIEKELDKDELFSKVEGMFYNYEDLKKEIEYFEEEIDFLKQDYMGCGAIEYSEKVQTSTNISSSIEKEILQKQKQIEFLEKHKLKKERDLKRIERARGNFNREEQEMFNIRYKLKIKDWKIYADKMNVGKDTYYSIRDSMIHKSMSIMYPFYNLKNTAMEGLIDC
SIO_010081: RSJ16_RS00175
subclass of: SO_0000673
so part of: RSJ16_RS00175
location: 27283..27795
location: region:27283-27795:1
so has part: feature:27283-27795:1:exon

WP_101508031.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27283-27795:1:exon

RSJ16_RS00180
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00180
old locus tag: RSJ16_00180
so part of: sequence
location: 28007..28213
location: region:28007-28213:1
so has part: feature:28007-28213:1:exon
subclass of: SO_0000010

57934032
type: Gene
SIO_000068: ncbigene

position:28007:1
position: 28007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28213:1
position: 28213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28007-28213:1:exon

RSJ16_RS00180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00180
old locus tag: RSJ16_00180
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKWKDADEVIKMIHDLENENLRRLDREMSKKPNFDHYQSKCIVKGCNNKTRTQSRLCAKHIDKLIGK
SIO_010081: RSJ16_RS00180
subclass of: SO_0000673
so part of: RSJ16_RS00180
location: 28007..28213
location: region:28007-28213:1
so has part: feature:28007-28213:1:exon

WP_101508032.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28007-28213:1:exon

RSJ16_RS00185
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00185
old locus tag: RSJ16_00185
so part of: sequence
location: 28232..28810
location: region:28232-28810:1
so has part: feature:28232-28810:1:exon
subclass of: SO_0000010

57934033
type: Gene
SIO_000068: ncbigene

position:28232:1
position: 28232
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28810:1
position: 28810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28232-28810:1:exon

RSJ16_RS00185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00185
old locus tag: RSJ16_00185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014313210.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MNYVEPIRDSDILANMCLYLKENNNRNYIMFIMGIYTGLRISDILKLRVKDVIDISNKTNKRKIKKQITLREQKTSKQKIIKINPILREALEEYVQDKEIYEYIIKSRQGFNKPITRKRAYEILKELGDMFNVDCLGCHSMRKTFGYHYYKQTKDIALLQKIFNHSSPAITLAYIGIDQDRMDRAYTTFRYF
SIO_010081: RSJ16_RS00185
subclass of: SO_0000673
so part of: RSJ16_RS00185
location: 28232..28810
location: region:28232-28810:1
so has part: feature:28232-28810:1:exon

WP_101508033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28232-28810:1:exon

RSJ16_RS00190
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00190
old locus tag: RSJ16_00190
so part of: sequence
location: 29002..29199
location: region:29002-29199:1
so has part: feature:29002-29199:1:exon
subclass of: SO_0000010

57934034
type: Gene
SIO_000068: ncbigene

position:29002:1
position: 29002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29199:1
position: 29199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29002-29199:1:exon

RSJ16_RS00190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00190
old locus tag: RSJ16_00190
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEIKIITKGMYFLEKKLESPLLKKEAAERRWERDSKGYNFVFKFSDGELNNYVSVPHLNKYLDKK
SIO_010081: RSJ16_RS00190
subclass of: SO_0000673
so part of: RSJ16_RS00190
location: 29002..29199
location: region:29002-29199:1
so has part: feature:29002-29199:1:exon

WP_101508034.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29002-29199:1:exon

RSJ16_RS00195
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00195
old locus tag: RSJ16_00195
so part of: sequence
location: 29204..29620
location: region:29204-29620:1
so has part: feature:29204-29620:1:exon
subclass of: SO_0000010

57934035
type: Gene
SIO_000068: ncbigene

position:29204:1
position: 29204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29620:1
position: 29620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29204-29620:1:exon

RSJ16_RS00195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00195
old locus tag: RSJ16_00195
EC number: 3.1.-.-
inference: COORDINATES: protein motif:HMM:NF013964.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease signature motif containing protein
translation: MKKICPKCNRRLVSISKKYCEVCEAKANDRHKEYKKYREDSKEQSFYSSTAWRLKREKIKYIDNGYCLLCLDKGILKAMDTTHHIVELKEDWIKRFDEENLISLCESCHQVVHNKYKTSDKEQTQNELKSILRKFRDK
SIO_010081: RSJ16_RS00195
subclass of: SO_0000673
so part of: RSJ16_RS00195
location: 29204..29620
location: region:29204-29620:1
so has part: feature:29204-29620:1:exon

WP_101508035.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29204-29620:1:exon

RSJ16_RS00200
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00200
old locus tag: RSJ16_00200
so part of: sequence
location: 29752..30237
location: region:29752-30237:1
so has part: feature:29752-30237:1:exon
subclass of: SO_0000010

57934036
type: Gene
SIO_000068: ncbigene

position:29752:1
position: 29752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30237:1
position: 30237
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29752-30237:1:exon

RSJ16_RS00200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00200
old locus tag: RSJ16_00200
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012704479.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage terminase small subunit P27 family
translation: MARPRVPKDLQSKNLTKEEKAEKEIEEDLIKANSDQLEKAPRWLRDKVAKKEWKRLVEQFRTIAVISNLDLNNLGAYCNAYSSYIEASEELAKQPQVVEYTNKFGATNFVENPYIKIQMKYSDEMRKYSSLLGLSIDSRLKLATIKSKETKQDIVDDFGDI
SIO_010081: RSJ16_RS00200
subclass of: SO_0000673
so part of: RSJ16_RS00200
location: 29752..30237
location: region:29752-30237:1
so has part: feature:29752-30237:1:exon

WP_101508036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29752-30237:1:exon

RSJ16_RS00205
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00205
old locus tag: RSJ16_00205
so part of: sequence
location: 30239..31990
location: region:30239-31990:1
so has part: feature:30239-31990:1:exon
subclass of: SO_0000010

57934037
type: Gene
SIO_000068: ncbigene

position:30239:1
position: 30239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:31990:1
position: 31990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30239-31990:1:exon

RSJ16_RS00205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00205
old locus tag: RSJ16_00205
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012721183.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: terminase large subunit
translation: MFEVPIIEELIEYAKNCLEDKYISEYEDYISCEKHKWACQRFLNDVKNQSLKILNKEFPYYWDEEEAQKIVKWFSHLRHSKGILAKQPIILNKWQKFFLCQIYGWRHKVTGYRRFKKSFTEVARKNAKSQMESGVALYEIACTSTKNDEIYETYCAGVKRKQSKVVFDEAKLMLRGSPLKSKFNITRDRITHIKTESYLEALNKEDGKKGDGSNPALLIIDEYHQHPTTEFYDLGLGANTKEELLMIITTAGMDLTYPCYGQEYLYCSRVLNPNVDTWNDEYFVDIQEIDEKDDIDNKRNWKKANPIRMTYSKGVEKIEGEYKIAKDIPEKMITFLTKCLNKWVQAKQNGYMNMAKWKACEVKKITYDLKGKDVFVGFDMSAKVDLTSVAFIIPIFDKNEKKYICYSHSFIPNREKLIERKRLDKVNYDSWESNGFLTVTDTEIVDQNAVMNYVLDTCKKNNWKIYNLCFDPSNASKIMMDLENEGYDVVEVYQSHKSLNEATQGFREQVYSKNVIYEHNPVLNFAMSNAVIRKSNGLIKIDKDANKKRIDPVDAMLAAFKLAYYYEPINTADIDEWLDSDEW
SIO_010081: RSJ16_RS00205
subclass of: SO_0000673
so part of: RSJ16_RS00205
location: 30239..31990
location: region:30239-31990:1
so has part: feature:30239-31990:1:exon

WP_101508037.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30239-31990:1:exon

RSJ16_RS00210
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00210
old locus tag: RSJ16_00210
so part of: sequence
location: 32007..33281
location: region:32007-33281:1
so has part: feature:32007-33281:1:exon
subclass of: SO_0000010

57934038
type: Gene
SIO_000068: ncbigene

position:32007:1
position: 32007
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33281:1
position: 33281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32007-33281:1:exon

RSJ16_RS00210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00210
old locus tag: RSJ16_00210
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012720672.1
GO component: GO:0044423 - virion component [Evidence IEA]
GO function: GO:0005198 - structural molecule activity [Evidence IEA]
GO process: GO:0019068 - virion assembly [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phage portal protein
translation: MKLFKRFKNQVDDETINTNPTLEQIQGFFDTKNILNISNSKLSSITYYTCMQIRCNALAKLPLKLMQELENGSSRKAVDQSLYRLLKYRPNPYMTPHDFKWATEFQRLDCGDAFWVMDIDYNNHSIKGLYLLDSTRVSIIIDDTKVNDTSSNITNDNQRLFYIYNDPKKGQLIYTKDQIVHFKNFSMNGIKGTSIKKYISDIINNEQYATNVLKEKYQSGLQDPIIVEYVGDLNDAKQQKIRKKFASLGGTKNAGKVVPIPTDFKVSQLETKLVNSQFFEIQGLTAKHIANAFGVKGFQLNDMEKSSYNNIEQQNKAFYSDTLQNVLTTYEEEMDYKLLFEYQKEKGYYWNFNVDSILRSDLKSRTDAHRTAVVTGWKTIAEVRAQENLPYIEGTDRLIIGNGASIFLDDLGSQYGEGGEKGEG
SIO_010081: RSJ16_RS00210
subclass of: SO_0000673
so part of: RSJ16_RS00210
location: 32007..33281
location: region:32007-33281:1
so has part: feature:32007-33281:1:exon

WP_237164315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:32007-33281:1:exon

RSJ16_RS00215
type: Gene
subclass of: SO_0000704
RO_0002162: 1505
locus tag: RSJ16_RS00215
old locus tag: RSJ16_00215
so part of: sequence
location: 33271..33975
location: region:33271-33975:1
so has part: feature:33271-33975:1:exon
subclass of: SO_0000010

57934039
type: Gene
SIO_000068: ncbigene

position:33271:1
position: 33271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:33975:1
position: 33975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:33271-33975:1:exon

RSJ16_RS00215
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1505
locus tag: RSJ16_RS00215
old locus tag: RSJ16_00215
EC number: 3.4.21.92
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003429614.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Clp protease ClpP
translation: MKDNLKEILQVKNQTSTSADLYFYGDIVSSWWGAWDDTDQYPESIKNFLDEHKGKDLNIYVNSGGGSVFAGLAIYNMLKRHEGQKIVYVDGLAASIASVIALAGDKVVIPNTASFMIHKPWGWTSGNANDFRKMANDLDSIEKCILNVYEENLKEGVSIDTIKQMVEEETWLTGEEACNFFNVELGEEKSIVACSSEYFDSYKHLPSKFKNSKMKQIKNDKEEIEKLRLELQLI
SIO_010081: RSJ16_RS00215
subclass of: SO_0000673
so part of: RSJ16_RS00215
location: 33271..33975
location: region:33271-33975:1
so has part: feature:33271-33975:1:exon

WP_237164316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:33271-33975:1:exon