Clostridium perfringens strain CPI 18-6 plasmid pCPCPI18-6_1.
type: Entry
definition: Clostridium perfringens strain CPI 18-6 plasmid pCPCPI18-6_1.
sequence version: NZ_CP075980.1
sequence date: 2023-03-26
sequence: sequence
division: CON
label: NZ_CP075980.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN18175750
keyword: RefSeq
source: Clostridium perfringens
organism: Clostridium perfringens
taxonomy: Bacteria; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP075980.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 44x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 06:44:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,974\nCDSs (total) :: 2,846\nGenes (coding) :: 2,836\nCDSs (with protein) :: 2,836\nGenes (RNA) :: 128\nrRNAs :: 10, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 10, 10 (5S, 16S, 23S)\ntRNAs :: 94\nncRNAs :: 4\nPseudo Genes (total) :: 10\nCDSs (without protein) :: 10\nPseudo Genes (ambiguous residues) :: 0 of 10\nPseudo Genes (frameshifted) :: 3 of 10\nPseudo Genes (incomplete) :: 5 of 10\nPseudo Genes (internal stop) :: 3 of 10\nPseudo Genes (multiple problems) :: 1 of 10\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 15336
topology: linear
so has quality: SO_0000987
location: 1..15336
location: region:1-15336:1
RO_0002162: 1502

NZ_CP075980
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN18175750
type: BioSample
SIO_000068: biosample

1
title: Comparative genome analysis and spore heat resistance assay reveal niche adaptation within Clostridium perfringens enterotoxin-carrying isolates
author: Jaakkola, K.
author: Lahti, P.
author: Virtanen, K.
author: Lindstrom, M.
author: Korkeala, H.
journal: Unpublished

2
title: Direct Submission
author: Korkeala, H.
author: Jaakkola, K.
journal: Submitted (06-MAR-2021) Department of Food Hygiene and Environmental Health, University of Helsinki, Agnes Sjoberginkatu 2, Helsinki 000066, Finland

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15336:1
position: 15336
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15336:1:source
so part of: sequence
organism: Clostridium perfringens
mol type: genomic DNA
strain: CPI 18-6
isolation source: feces
plasmid: pCPCPI18-6_1
country: Finland
collection date: 2003
genotype: cpe neg

1502
type: Taxonomy
SIO_000068: taxonomy

KLF48_RS14775
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14775
old locus tag: KLF48_14745
so part of: sequence
location: 58..1278
location: region:58-1278:1
so has part: feature:58-1278:1:exon
subclass of: SO_0000010

69450662
type: Gene
SIO_000068: ncbigene

position:58:1
position: 58
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1278:1
position: 1278
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:58-1278:1:exon

KLF48_RS14775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14775
old locus tag: KLF48_14745
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003450519.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding response regulator
translation: MRNALKLNKMNYIDNIHSRSKGWITRSVINKKGYSQWHYKYAELKDLDMSNENIYITLNTFYKPCRRLENIKELNTLFIDLDYYKTGKTKDQVLMDLEKNYFNQSIPIPNYVIDSGRGMYLIWIINVVPSQALPLWKAVQEYLYNQLKFFGADRQALDATRILRVPGSINSKSKTVVNVLDEYEYIYDLREIQNGFLPELKPYEKKKGRPSKINYIYRERSLYYGRIQDIIKLCELREYDLKGHRELILFLYRYYLCSFTEDIEKALNDVLELNSMFRQALSEREVIRATRSAERCYLDKNKQYKYKNETLIELLEITEEEQKYMTIIISKKEYKRRDRVYQKKKYQEQLKVQGKLSEKQKIYNRRKKIKVLLDKGLKQKDICLQLNISKLTYIRDRKFLKEQGLI
SIO_010081: KLF48_RS14775
subclass of: SO_0000673
so part of: KLF48_RS14775
location: 58..1278
location: region:58-1278:1
so has part: feature:58-1278:1:exon

WP_224384485.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:58-1278:1:exon

KLF48_RS14780
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14780
old locus tag: KLF48_14750
so part of: sequence
location: 1581..1886
location: region:1581-1886:1
so has part: feature:1581-1886:1:exon
subclass of: SO_0000010

69450663
type: Gene
SIO_000068: ncbigene

position:1581:1
position: 1581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1886:1
position: 1886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1581-1886:1:exon

KLF48_RS14780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14780
old locus tag: KLF48_14750
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003482747.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family transcriptional regulator
translation: MATKVIKEDVIRVRVTKEHKEKLKKIAKEKNTTISEILNVATKNVIKNYEEQEKNYKKMCERSVATEEKIQEIKLNLEKRKLKNEKNFANKLKLFFPVLRK
SIO_010081: KLF48_RS14780
subclass of: SO_0000673
so part of: KLF48_RS14780
location: 1581..1886
location: region:1581-1886:1
so has part: feature:1581-1886:1:exon

WP_224384486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1581-1886:1:exon

KLF48_RS14785
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
gene: mobC
locus tag: KLF48_RS14785
old locus tag: KLF48_14755
so part of: sequence
location: 2146..2463
location: region:2146-2463:1
so has part: feature:2146-2463:1:exon
subclass of: SO_0000010

69450664
type: Gene
SIO_000068: ncbigene

position:2146:1
position: 2146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2463:1
position: 2463
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2146-2463:1:exon

KLF48_RS14785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
gene: mobC
locus tag: KLF48_RS14785
old locus tag: KLF48_14755
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003450500.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MNENRKREKQIKFYVNEKEYDQIKKKVKKSKLKQQEYLIKSALNKKIIVIDGLKEILLELSREGNNLNQIAKKINEGEQKDIKEMKNKLNNLWDLIEKILKESNK
SIO_010081: KLF48_RS14785
subclass of: SO_0000673
so part of: KLF48_RS14785
location: 2146..2463
location: region:2146-2463:1
so has part: feature:2146-2463:1:exon

WP_143830486.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2146-2463:1:exon

KLF48_RS14790
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14790
old locus tag: KLF48_14760
so part of: sequence
location: 2463..3551
location: region:2463-3551:1
so has part: feature:2463-3551:1:exon
subclass of: SO_0000010

69450665
type: Gene
SIO_000068: ncbigene

position:3551:1
position: 3551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2463-3551:1:exon

KLF48_RS14790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14790
old locus tag: KLF48_14760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003482745.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MAVIKYLPGKKSLKSQLKYLEKEGKTLEELKIGINCTSDNIEKEFNIVKELYNKKEGKQYYHYTQAFNPEDKITPEKAHEIGKEWIEKNIKGYQIYLVTHIDKEHIHNHFIINSVSFEDGKKLQISPKKLEKMKKESNKICEREHLTEINLNKKNEVLKTDEEYRIEKRGQETWKGELREVIELELKKSKSLEEFRENLKEKYNVETRVTKSTISYKHPEQKKSVRGKRLGEKYTKERIINEFNKQTDRSISKGDNRGREEERGIEEGNRGAEKIKGRSEENKRRLIFEGGISDRIRKNDEKYKTDGIEYFERLKKDRELAERRERELRELEEERIRREKEEYRRFEERIRRDRENEREFEM
SIO_010081: KLF48_RS14790
subclass of: SO_0000673
so part of: KLF48_RS14790
location: 2463..3551
location: region:2463-3551:1
so has part: feature:2463-3551:1:exon

WP_224384487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2463-3551:1:exon

KLF48_RS14795
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14795
old locus tag: KLF48_14765
so part of: sequence
location: 3529..4266
location: region:3529-4266:1
so has part: feature:3529-4266:1:exon
subclass of: SO_0000010

69450666
type: Gene
SIO_000068: ncbigene

position:3529:1
position: 3529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4266:1
position: 4266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3529-4266:1:exon

KLF48_RS14795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14795
old locus tag: KLF48_14765
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003448524.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4352 domain-containing protein
translation: MKESLKCKLEYIENKSIELEKIELFNNAEETRKNLDDIFEERKKEYLKFFESERKRIESENIKNKKELEEFKNKIEEKRNYFRKPILIISAICVGITLYGLFKINSVSNLINEHEKKLSYKGAVEKANNKDKEIRYGKIGEWVEEGNFKIKVNSLKKESGTMGKEKDIINITVENISNEDMKIDPTMFNVVGENGSKTKQALTFDDKITQIVNRGRKVTFDYEVYPEEEGINLELEFGRVVIKLN
SIO_010081: KLF48_RS14795
subclass of: SO_0000673
so part of: KLF48_RS14795
location: 3529..4266
location: region:3529-4266:1
so has part: feature:3529-4266:1:exon

WP_224384488.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3529-4266:1:exon

KLF48_RS14800
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14800
old locus tag: KLF48_14770
so part of: sequence
location: complement(4431..4532)
location: region:4431-4532:-1
so has part: feature:4431-4532:-1:exon
subclass of: SO_0000010

69450667
type: Gene
SIO_000068: ncbigene

position:4431:-1
position: 4431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4532:-1
position: 4532
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4431-4532:-1:exon

KLF48_RS14800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14800
old locus tag: KLF48_14770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017810891.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative holin-like toxin
translation: MSNNNLMLLFTGGMFLLALLTFIVLLIEKISKK
SIO_010081: KLF48_RS14800
subclass of: SO_0000673
so part of: KLF48_RS14800
location: complement(4431..4532)
location: region:4431-4532:-1
so has part: feature:4431-4532:-1:exon

WP_224384489.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4431-4532:-1:exon

KLF48_RS14805
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14805
old locus tag: KLF48_14775
so part of: sequence
location: complement(4749..5222)
location: region:4749-5222:-1
so has part: feature:4749-5222:-1:exon
subclass of: SO_0000010

69450668
type: Gene
SIO_000068: ncbigene

position:4749:-1
position: 4749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5222:-1
position: 5222
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4749-5222:-1:exon

KLF48_RS14805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14805
old locus tag: KLF48_14775
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSLLNNCTDLAFKFLSSVEIDNYGSNQHELHGARAFKNLFGYNKQRLQGTITYIDTNNISSRKTQLTWYDSREFNFNRSEYRFYYTSEISDFKPNVNDLLLISHNRLNNQVVIVIIHDKDIIKKILRNKYQFKEYNYPNGSSYYAEIKNIPWITNII
SIO_010081: KLF48_RS14805
subclass of: SO_0000673
so part of: KLF48_RS14805
location: complement(4749..5222)
location: region:4749-5222:-1
so has part: feature:4749-5222:-1:exon

WP_224384490.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4749-5222:-1:exon

KLF48_RS14810
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14810
old locus tag: KLF48_14780
so part of: sequence
location: complement(5260..6000)
location: region:5260-6000:-1
so has part: feature:5260-6000:-1:exon
subclass of: SO_0000010

69450669
type: Gene
SIO_000068: ncbigene

position:5260:-1
position: 5260
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6000:-1
position: 6000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5260-6000:-1:exon

KLF48_RS14810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14810
old locus tag: KLF48_14780
inference: COORDINATES: protein motif:HMM:NF026853.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MvaI/BcnI family restriction endonuclease
translation: MSEHINELMKRINQIKGLGWIKSHRQGDTGIGKTFEDQLGVDENNIPTADFRDIEIKTHRQASSSMITLFTKAPSYPKGANTILRDNYGTITEHGTKKLHTTVSSTNPTNSLLYKFNFQVKIDDDDNVVRLFIYNNKGILINSDIFWSCSVFDDAIKKKLKTIAIIDAEEKVDKKGIHYFKYDKVKLVTGLTTNALKEAIRNGDVKIDIRIGTYNSGKNLGKVHDHGTGFRISLQNLIKYADIIQL
SIO_010081: KLF48_RS14810
subclass of: SO_0000673
so part of: KLF48_RS14810
location: complement(5260..6000)
location: region:5260-6000:-1
so has part: feature:5260-6000:-1:exon

WP_224384491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5260-6000:-1:exon

KLF48_RS14815
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14815
old locus tag: KLF48_14785
so part of: sequence
location: complement(6015..6320)
location: region:6015-6320:-1
so has part: feature:6015-6320:-1:exon
subclass of: SO_0000010

69450670
type: Gene
SIO_000068: ncbigene

position:6015:-1
position: 6015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6320:-1
position: 6320
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6015-6320:-1:exon

KLF48_RS14815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14815
old locus tag: KLF48_14785
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNLFNKTIAELVHFELVKQNIQLIDLAKKLNVDERTVRYFNEANTSRHYKLQDLYRIARILKIDITELLPNEKSLKKIRRNYSDKQIKNLLTEILDSLEQY
SIO_010081: KLF48_RS14815
subclass of: SO_0000673
so part of: KLF48_RS14815
location: complement(6015..6320)
location: region:6015-6320:-1
so has part: feature:6015-6320:-1:exon

WP_224384492.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6015-6320:-1:exon

KLF48_RS14820
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14820
old locus tag: KLF48_14790
so part of: sequence
location: 6505..7851
location: region:6505-7851:1
so has part: feature:6505-7851:1:exon
subclass of: SO_0000010

69450671
type: Gene
SIO_000068: ncbigene

position:6505:1
position: 6505
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7851:1
position: 7851
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6505-7851:1:exon

KLF48_RS14820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14820
old locus tag: KLF48_14790
inference: COORDINATES: protein motif:HMM:NF014177.2
GO function: GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO process: GO:0032775 - DNA methylation on adenine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA adenine methylase
translation: MNNIDRTIVNKINKKIYENKDYFDFVGVDTKDYTHRYHSYPAMMIPMIPRSLLDMTLEEVNISNLYDPFCGSGTTAVEGVLRGLEVFTNDINPLSTFMAKVKTTPIEPDSLKLAFEKLSYELGELELSYNAGNYTIENLPTFKNIDYWFKEEVIIKLQMIKESILKIENIAIKEFFLAAFSDTVRYVSNSRNSEFKLYRLEEEKLKKWNPNVFNEFKEFSKRNIDGNRAFYKEIGKRENRKHIYNLSSMNLSDRIPANSFDLLITSPPYGDSKTTVAYGQFSRLSLQWLNLEMEMEVNQLDNVMLGGKVDKELNVEETLNSLQSQTLIEIYNDINENDTNEKKKRGLEVLQFFKDIDKTLLEIARVMKNGSYQYWVVANRKVKNVDIPLDQIIVELFSKYKIIFIERFYRNIPNKKMPKTNSPTNKKGKKVSTMNKEIILMFRKEENN
SIO_010081: KLF48_RS14820
subclass of: SO_0000673
so part of: KLF48_RS14820
location: 6505..7851
location: region:6505-7851:1
so has part: feature:6505-7851:1:exon

WP_224384493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6505-7851:1:exon

KLF48_RS14825
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14825
old locus tag: KLF48_14795
so part of: sequence
location: 8119..8688
location: region:8119-8688:1
so has part: feature:8119-8688:1:exon
subclass of: SO_0000010

69450672
type: Gene
SIO_000068: ncbigene

position:8119:1
position: 8119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8688:1
position: 8688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8119-8688:1:exon

KLF48_RS14825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14825
old locus tag: KLF48_14795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010889928.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLVGYARVSTEEQSLNRQIDMLVDYGVDKRNIYQEKISGMKSNREQLDKMIDELQEGDTVIITDLTRISRSTKDLLNIIDRIKAKGASIKSIKDTWLDTSSDNPYNSFLLTVMSGLSQLERDLISQRTKEGLKSAKARGRNGGRPSKRNDKADTVGLLYREGYKIVDIVKQTGLSRATVYRVLNDLKLK
SIO_010081: KLF48_RS14825
subclass of: SO_0000673
so part of: KLF48_RS14825
location: 8119..8688
location: region:8119-8688:1
so has part: feature:8119-8688:1:exon

WP_124228716.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8119-8688:1:exon

KLF48_RS14830
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14830
old locus tag: KLF48_14800
so part of: sequence
location: 8714..9070
location: region:8714-9070:1
so has part: feature:8714-9070:1:exon
subclass of: SO_0000010

69450673
type: Gene
SIO_000068: ncbigene

position:8714:1
position: 8714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9070:1
position: 9070
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8714-9070:1:exon

KLF48_RS14830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14830
old locus tag: KLF48_14800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000638298.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIWSKLSSSINYYINKRIWGEELLKENILLLNQYIEDAFILEDGIYKYLDKKTYEYIDLSEEDMKKIEEAFIERLEKKRKVNKDKENFKNHMIMITDYLENEKSKEKSNVIELKNYRK
SIO_010081: KLF48_RS14830
subclass of: SO_0000673
so part of: KLF48_RS14830
location: 8714..9070
location: region:8714-9070:1
so has part: feature:8714-9070:1:exon

WP_011264123.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8714-9070:1:exon

KLF48_RS14835
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14835
old locus tag: KLF48_14805
so part of: sequence
location: complement(9162..10190)
location: region:9162-10190:-1
so has part: feature:9162-10190:-1:exon
subclass of: SO_0000010

69450674
type: Gene
SIO_000068: ncbigene

position:9162:-1
position: 9162
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10190:-1
position: 10190
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9162-10190:-1:exon

KLF48_RS14835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14835
old locus tag: KLF48_14805
EC number: 3.5.1.28
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004459421.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetylmuramoyl-L-alanine amidase
translation: MKIAIRGGHNFLAKGACGLIDETIEDRKVYKAVIKNLIENNFEVLDVTPGDCDVNTDLKLGVDKANNFNADLFISIHFDKCYDKFDGPLGTGTWVCEKGGKAEIYAQNIVDTISEGTSLKNRGVKTNAKLYELNKTIMPAVIVEVCFCESKVDVDIYREKGPDLIGYLIAKGICKSVNKEISSDLPQVNVENTTNSQNNNLFKTNATAKVALDPRDNPSTNYKDLGEIYENERIKILAEVCDLKFFLPATYWQDTLNKESSPIWVNSKQTVLNVDTNATVINVLTELDARYTPSPDSNRMGYVKNQERLFVHKIENNYALATYLASEGYKTAWFTAEYIKLD
SIO_010081: KLF48_RS14835
subclass of: SO_0000673
so part of: KLF48_RS14835
location: complement(9162..10190)
location: region:9162-10190:-1
so has part: feature:9162-10190:-1:exon

WP_011264124.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9162-10190:-1:exon

KLF48_RS14840
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14840
old locus tag: KLF48_14810
so part of: sequence
location: 10502..11059
location: region:10502-11059:1
so has part: feature:10502-11059:1:exon
subclass of: SO_0000010

69450675
type: Gene
SIO_000068: ncbigene

position:10502:1
position: 10502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11059:1
position: 11059
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10502-11059:1:exon

KLF48_RS14840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14840
old locus tag: KLF48_14810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003448511.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: sigma-70 family RNA polymerase sigma factor
translation: MSELYKNIVLCQKGDKKAIEYIINKFEILINKYKMSFLKEIHFNSYDVEDNKQDLIVSLINIVNKIPIDNPQFENEGCLVNYIYKSILNSRKDMYINKNIKRYFIESQSLSSMVEFKDKPLVKYIESNIEIEDMLKCLTEKEQKVIKYKFLNDKSEVEIAEIMGTSRQWINRIKNTALKKLKENI
SIO_010081: KLF48_RS14840
subclass of: SO_0000673
so part of: KLF48_RS14840
location: 10502..11059
location: region:10502-11059:1
so has part: feature:10502-11059:1:exon

WP_087328397.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10502-11059:1:exon

KLF48_RS14845
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14845
old locus tag: KLF48_14815
so part of: sequence
location: 11140..11334
location: region:11140-11334:1
so has part: feature:11140-11334:1:exon
subclass of: SO_0000010

69450676
type: Gene
SIO_000068: ncbigene

position:11140:1
position: 11140
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11334:1
position: 11334
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11140-11334:1:exon

KLF48_RS14845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14845
old locus tag: KLF48_14815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003448518.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: bacteriocin UviB
translation: MDSELFKLMATQGAFAILFSYLLFYVLKENSKREDKYQNIIEELTELLPKIKEDVEDIKEKLNK
SIO_010081: KLF48_RS14845
subclass of: SO_0000673
so part of: KLF48_RS14845
location: 11140..11334
location: region:11140-11334:1
so has part: feature:11140-11334:1:exon

WP_003448518.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11140-11334:1:exon

KLF48_RS14850
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14850
so part of: sequence
location: 11591..14683
location: region:11591-14683:1
so has part: feature:11591-14683:1:exon
subclass of: SO_0000010

69450677
type: Gene
SIO_000068: ncbigene

position:11591:1
position: 11591
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14683:1
position: 14683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11591-14683:1:exon

KLF48_RS14850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003465040.1
GO function: GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO process: GO:0006508 - proteolysis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M14 family zinc carboxypeptidase
translation: MANNIIPNVSSGDLVGSTPTFPPNAVVRGDFLYLRDVDGNQIPGRTVSDGDEITVLFISNEKNIVLVQYPTSSGYRQGYVTNATSIIKYKDDYSWVNGSTPEPVYDFDKTTQIGTLDPRERAVVLYKVDGMTYVAYDTGKGKLTKSGLVHYEGAGSSTGGGSFNGVAPGEVVPGGFTYENNAEVVGDELYLRDANGSLIPGRSVSVGDRITVLDVSYSKQLALVQYPAGSVVRQGYVTNATNLIRYFKQGEWLNGSTTEPVLDENGGSLGSLSPYEAATPLYKKNGMIHVVYDTSKGPNTKSGYVKFEGLAQLPDTSIQIPSVSHSQATVDVYGTSGKGRPLKVYKIGNGSKVLFAGFAIHGWEDRWDNDGLALVNIANSLISKIGDYKAQNGLHGWTVYIAPCMNPDGVIVRGTNNGPGRCAVKSRIDMNRCFPRGFKAQYNSRNYTGPNPLGAQEAVALKEFIEKINRTADELVVIDGHGWLGCTYGDSSIAQYFTKQFGFSHNGPSGGGYFSYWAQGLPRTRGLLLEYPDTYSYGEVISRNYIGKTFNAIINILKNNPNGKAEDVNTNSSTSKWEKKDNKWYYYENGNMVTGWKLVDGKWYYLESNGVMAVGWKELGGIWYYLNESGAMVKGWQTISGKTYYFNDSGHMLVGKQVIDGRNYNFNTSGQLDSTNWVKSNNKWYYYENGKMITGWKLINGEWYYLESNGVMATGWKPILGKTYYFNESGHRVVGKQIIDGKSYEFNGSGHLISYEENISSSEIIYKAEGEVIDVQTILNVRKGAGTEYDSIGKLHQGNKVNIVAKNGEWYKISSPISGYVHKDFIKITKAIKKTYPEALNVIRGILREIGFKGTIDVNVPIASIAVGNLKVSAYVGATSTISIGEGKIATFSVNNGKIDFKVNGFPMPEFIKILKKLEEIAVKIEEGNITATINSKGDLTMEIAVKYEKSDELIKETHSLYCKITCSTENDDDNRNVYDEAYALSKEEIYNMVIIGSGVVLGVVAIILAPELIPAILIAASRLVPKVAG
SIO_010081: KLF48_RS14850
subclass of: SO_0000673
so part of: KLF48_RS14850
location: 11591..14683
location: region:11591-14683:1
so has part: feature:11591-14683:1:exon

WP_224384494.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11591-14683:1:exon

KLF48_RS14855
type: Gene
subclass of: SO_0000704
RO_0002162: 1502
locus tag: KLF48_RS14855
old locus tag: KLF48_14850
so part of: sequence
location: 14754..15281
location: region:14754-15281:1
so has part: feature:14754-15281:1:exon
subclass of: SO_0000010

69450678
type: Gene
SIO_000068: ncbigene

position:14754:1
position: 14754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15281:1
position: 15281
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14754-15281:1:exon

KLF48_RS14855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1502
locus tag: KLF48_RS14855
old locus tag: KLF48_14850
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003456950.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YcxB family protein
translation: MKIKYKNSIDDLVQLNMSIFKRDLVIQKRLKIKYAIVPIIIIVDFFVVSWLTGFVRNKITNLFLIFCLIIIIPWLLFYPRFAEFQYKKILIKRLKNNIKNDFDLIVTIDKNGIREESENGNVTYCWDKVEEVKDLDTHIFIYISNLNAIVIPSNSFRDEREKNELIKIINENIKK
SIO_010081: KLF48_RS14855
subclass of: SO_0000673
so part of: KLF48_RS14855
location: 14754..15281
location: region:14754-15281:1
so has part: feature:14754-15281:1:exon

WP_224384495.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14754-15281:1:exon