Clostridioides difficile strain S-0253 plasmid unnamed, complete sequence.
Clostridioides difficile (Clostridium difficile)
Bacteria; Bacillota; Clostridia; Eubacteriales; Peptostreptococcaceae; Clostridioides.
Complete genome assembly of three Australian C. difficile strains
Submitted (02-JUN-2021) Riley C. difficile Research Group, University of Western Australia, Hospital Ave, Perth, WA 6009, Australia
REFSEQ INFORMATION: The reference sequence is identical to\nCP076402.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 21-JAN-2021\nAssembly Method :: Unicycler v. v0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 563x MinION +\n 130x Illuminax\nSequencing Technology :: MinION Mk1c and Illumina NovaSeq 6000\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 06:15:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,732\nCDSs (total) :: 3,603\nGenes (coding) :: 3,567\nCDSs (with protein) :: 3,567\nGenes (RNA) :: 129\nrRNAs :: 11, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 12, 12 (5S, 16S, 23S)\ntRNAs :: 90\nncRNAs :: 4\nPseudo Genes (total) :: 36\nCDSs (without protein) :: 36\nPseudo Genes (ambiguous residues) :: 0 of 36\nPseudo Genes (frameshifted) :: 8 of 36\nPseudo Genes (incomplete) :: 24 of 36\nPseudo Genes (internal stop) :: 13 of 36\nPseudo Genes (multiple problems) :: 7 of 36\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011161239.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003430816.1
peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF017390.2
COORDINATES: similar to AA sequence:RefSeq:WP_009903180.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.