Paraclostridium bifermentans strain DSM 14991 plasmid unnamed4, complete sequence.
Bacteria; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae; Paraclostridium.
Complete genome sequence of Paraclostridium bifermentans DSM 14991
Submitted (14-JUL-2021) Biodiscovery Institute, School of Life Sciences, Heap Lab University of Nottingham, Biodiscovery Institute, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom
REFSEQ INFORMATION: The reference sequence is identical to\nCP079741.1.\nBacteria and source DNA available from DSMZ 14991.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2021\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/31/2022 04:11:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,530\nCDSs (total) :: 3,376\nGenes (coding) :: 3,356\nCDSs (with protein) :: 3,356\nGenes (RNA) :: 154\nrRNAs :: 16, 16, 16 (5S, 16S, 23S)\ncomplete rRNAs :: 16, 16, 16 (5S, 16S, 23S)\ntRNAs :: 102\nncRNAs :: 4\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 2 of 20\nPseudo Genes (incomplete) :: 13 of 20\nPseudo Genes (internal stop) :: 5 of 20\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016429372.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012424975.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF013670.2
COORDINATES: similar to AA sequence:RefSeq:WP_013275305.1
COORDINATES: protein motif:HMM:NF022597.2
COORDINATES: similar to AA sequence:RefSeq:WP_018591228.1
COORDINATES: protein motif:HMM:NF038353.1
COORDINATES: protein motif:HMM:NF020345.2
mor transcription activator family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007063229.1
COORDINATES: similar to AA sequence:RefSeq:WP_003758181.1
COORDINATES: similar to AA sequence:RefSeq:WP_003453413.1
COORDINATES: protein motif:HMM:NF018862.2
COORDINATES: similar to AA sequence:RefSeq:WP_002270382.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003290821.1
Sau3AI family type II restriction endonuclease