Paraclostridium bifermentans strain DSM 14991 plasmid unnamed4, complete sequence.
type: Entry
definition: Paraclostridium bifermentans strain DSM 14991 plasmid unnamed4, complete sequence.
sequence version: NZ_CP079741.1
sequence date: 2022-10-31
sequence: sequence
division: CON
label: NZ_CP079741.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN20207145
keyword: RefSeq
source: Paraclostridium bifermentans
organism: Paraclostridium bifermentans
taxonomy: Bacteria; Firmicutes; Clostridia; Eubacteriales; Clostridiaceae; Paraclostridium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP079741.1.\nBacteria and source DNA available from DSMZ 14991.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUL-2021\nAssembly Method :: Unicycler v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/31/2022 04:11:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,530\nCDSs (total) :: 3,376\nGenes (coding) :: 3,356\nCDSs (with protein) :: 3,356\nGenes (RNA) :: 154\nrRNAs :: 16, 16, 16 (5S, 16S, 23S)\ncomplete rRNAs :: 16, 16, 16 (5S, 16S, 23S)\ntRNAs :: 102\nncRNAs :: 4\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 2 of 20\nPseudo Genes (incomplete) :: 13 of 20\nPseudo Genes (internal stop) :: 5 of 20\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19800
topology: circular
so has quality: SO_0000988
location: 1..19800
location: region:1-19800:1
RO_0002162: 1490

NZ_CP079741
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN20207145
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Paraclostridium bifermentans DSM 14991
author: Little, G.T.
author: Selles Vidal, L.
author: Steadman, M.
author: Leyden-Preece, R.
author: Taylor, G.M.
author: Heap, J.T.
journal: Unpublished

2
title: Direct Submission
author: Little, G.T.
author: Selles Vidal, L.
author: Steadman, M.
author: Leyden-Preece, R.
author: Taylor, G.M.
author: Heap, J.T.
journal: Submitted (14-JUL-2021) Biodiscovery Institute, School of Life Sciences, Heap Lab University of Nottingham, Biodiscovery Institute, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19800:1
position: 19800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19800:1:source
so part of: sequence
organism: Paraclostridium bifermentans
mol type: genomic DNA
strain: DSM 14991
isolation source: soil
culture collection: DSM:14991
type material: type strain of Clostridium bifermentans
plasmid: unnamed4

1490
type: Taxonomy
SIO_000068: taxonomy

KXZ80_RS17500
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17500
old locus tag: KXZ80_17500
so part of: sequence
location: complement(join(19666..19800,1..534))
location: region:1-19800:-1
so has part: feature:1-534:-1:exon
so has part: feature:19666-19800:-1:exon
subclass of: SO_0000010

67474537
type: Gene
SIO_000068: ncbigene

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19800:-1
position: 19800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-534:-1:exon

position:534:-1
position: 534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:19666-19800:-1:exon

position:19666:-1
position: 19666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

KXZ80_RS17500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17500
old locus tag: KXZ80_17500
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNIFELGRLYIDSIPEGNENLDYDAIVPMITLQNGEVLSIRYRGYRGLMAREDNFNTVDRKPKLGYYDFFIDLGNGLTHRDLIEGVMEHSNINNCMRIWRGEHIEDVAHDEMEEIVLSELALCMLEQEINWGNRSWQKFTHFGNRGRDMIMGFINHAFDMGIDHIPNWNWNGTTPTFGGGFRNYEYTQYFEFQENPDSILNGAVLMEFNRKIRIKDNHPNCQ
SIO_010081: KXZ80_RS17500
subclass of: SO_0000673
so part of: KXZ80_RS17500
location: complement(join(19666..19800,1..534))
location: region:1-19800:-1
so has part: feature:1-534:-1:exon
so has part: feature:19666-19800:-1:exon

WP_021434401.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-534:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:19666-19800:-1:exon

KXZ80_RS17505
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17505
old locus tag: KXZ80_17505
so part of: sequence
location: complement(607..1827)
location: region:607-1827:-1
so has part: feature:607-1827:-1:exon
subclass of: SO_0000010

67474538
type: Gene
SIO_000068: ncbigene

position:607:-1
position: 607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1827:-1
position: 1827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:607-1827:-1:exon

KXZ80_RS17505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17505
old locus tag: KXZ80_17505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016429372.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA sulfur modification protein DndB
translation: MDNTKELQIHTMERKKAGFATASITVPAIAYRSGNRIWYAITVPFGALKSGIVKTSSVKKKGEEIIKSEIKNRFLDKSHKDEIKEYMKIEKQFTIPPVTLVCTEKLPFEPIVFGDVSDTLRTQEDLYDILEQVGSLGGIIQIPLDYQFECLDGNHRSVAIRELAEEMPEITVGSSLLLNIVCEADMMKIRQDFVDVNKNAKQTTPSINTLFNTRDPLPKLVAELMSKSTYLEDITNILSTSVSKNSNDIYTLNNIKNAVIELVGIDSQGAKTAEDRANKALADEDMKLEVEYRVGKFFEMLKDNRYLRDCLNNRSNTPNIRNQSIITLGVGVAIAAGVANYIFDNFSRENHYEELRKLMDYNWDRTNQLFKQSGIISSGDDEKVVTNRASITETKKYVAQALGYTL
SIO_010081: KXZ80_RS17505
subclass of: SO_0000673
so part of: KXZ80_RS17505
location: complement(607..1827)
location: region:607-1827:-1
so has part: feature:607-1827:-1:exon

WP_021434421.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:607-1827:-1:exon

KXZ80_RS17510
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
gene: dcm
locus tag: KXZ80_RS17510
old locus tag: KXZ80_17510
so part of: sequence
location: complement(2186..3439)
location: region:2186-3439:-1
so has part: feature:2186-3439:-1:exon
subclass of: SO_0000010

67474539
type: Gene
SIO_000068: ncbigene

position:2186:-1
position: 2186
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3439:-1
position: 3439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2186-3439:-1:exon

KXZ80_RS17510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
gene: dcm
locus tag: KXZ80_RS17510
old locus tag: KXZ80_17510
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012424975.1
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA (cytosine-5-)-methyltransferase
translation: MKVCELFAGVGGFHLGLRDSSDEFDFVWANQWEPGKKVQYAYDCYINHFGDKDIHVNKDISLVDKKNIPDHDLLVGGFPCQDYSVARTGAKGIQGVKGVLWWQIRDILKEKQPKFVLLENVDRLLKSPAKQRGRDFGVMLACFNELGYSVEWRVINAAEYGFSQRRRRVFIFAFKNSTNFANRINVEDLESWIHTDGFFQDEFPILPINEVEKVKKCKIEMEYEDIVDISDNFNLEFENSGIMSNGTIYTEKTVPKYDGKFTLLRDILESNVDEKYYIDTDEAILEKWKAPKAAKKINRVSKTGHEYVFSEGALAFPDYTDRPARTMLTSEASVNRSSHVVEDPATGRLRKLTPVEAERLNGFRDNWTNTDMSERARYFCMGNALVVGLVTKMGNTILDIYKDEQGDLGLREVAITK
SIO_010081: KXZ80_RS17510
subclass of: SO_0000673
so part of: KXZ80_RS17510
location: complement(2186..3439)
location: region:2186-3439:-1
so has part: feature:2186-3439:-1:exon

WP_021434416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2186-3439:-1:exon

KXZ80_RS17515
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17515
old locus tag: KXZ80_17515
so part of: sequence
location: complement(3647..4213)
location: region:3647-4213:-1
so has part: feature:3647-4213:-1:exon
subclass of: SO_0000010

67474540
type: Gene
SIO_000068: ncbigene

position:3647:-1
position: 3647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4213:-1
position: 4213
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3647-4213:-1:exon

KXZ80_RS17515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17515
old locus tag: KXZ80_17515
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKEQFNNLDFMEKIEYLNNKLREGQTVIRIREDLGIGEKSLQREVKANGYRYNSKTKQYMPTTETTTKSTTEILPTIVEDKTTIVGNENTFVVPKQQKQILGYLENNFEVLQEFLEKYKSTTRATTETTTNHIVINLVDDKHLNPKPKSIRINEFVYQDWQQFCESKHYSKQDLISMALKEYMDKYK
SIO_010081: KXZ80_RS17515
subclass of: SO_0000673
so part of: KXZ80_RS17515
location: complement(3647..4213)
location: region:3647-4213:-1
so has part: feature:3647-4213:-1:exon

WP_021434408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3647-4213:-1:exon

KXZ80_RS17520
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17520
old locus tag: KXZ80_17520
so part of: sequence
location: complement(5256..5549)
location: region:5256-5549:-1
so has part: feature:5256-5549:-1:exon
subclass of: SO_0000010

67474541
type: Gene
SIO_000068: ncbigene

position:5256:-1
position: 5256
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5549:-1
position: 5549
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5256-5549:-1:exon

KXZ80_RS17520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17520
old locus tag: KXZ80_17520
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MILWFLVISGILILVSGIYFLVTNYRQGKYIKGYGLLSYVGFVMVLLGAILLMEPIFITLPGNFSNIAPVVITMFTCAIAGKLLLKPTFLRNKNKTL
SIO_010081: KXZ80_RS17520
subclass of: SO_0000673
so part of: KXZ80_RS17520
location: complement(5256..5549)
location: region:5256-5549:-1
so has part: feature:5256-5549:-1:exon

WP_021434402.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5256-5549:-1:exon

KXZ80_RS17525
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17525
old locus tag: KXZ80_17525
so part of: sequence
location: complement(5679..6341)
location: region:5679-6341:-1
so has part: feature:5679-6341:-1:exon
subclass of: SO_0000010

67474542
type: Gene
SIO_000068: ncbigene

position:5679:-1
position: 5679
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6341:-1
position: 6341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5679-6341:-1:exon

KXZ80_RS17525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17525
old locus tag: KXZ80_17525
inference: COORDINATES: protein motif:HMM:NF013670.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetylmuramoyl-L-alanine amidase
translation: MKKLVIDLGHGASDPGSIGQAGTCEANIVLAIGKELNENLKGFDLDIKFTRLSDKFITLRERARIANEFGADYFLSIHINSASDKSVRGVEVWEYSMGIKKLDDFSNGLCEDISKLFNIRNRGIKLSKEFSVLKHTKMPAALVEVDFISNVEGEKALKDSNNIKAIVLAIRNNLINLFELEVTTNDILYKVCIGAYRDKNNALNQVKIAKEKGFRDAYIN
SIO_010081: KXZ80_RS17525
subclass of: SO_0000673
so part of: KXZ80_RS17525
location: complement(5679..6341)
location: region:5679-6341:-1
so has part: feature:5679-6341:-1:exon

WP_021434409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5679-6341:-1:exon

KXZ80_RS17530
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17530
old locus tag: KXZ80_17530
so part of: sequence
location: 7590..7838
location: region:7590-7838:1
so has part: feature:7590-7838:1:exon
subclass of: SO_0000010

67474543
type: Gene
SIO_000068: ncbigene

position:7590:1
position: 7590
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7838:1
position: 7838
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7590-7838:1:exon

KXZ80_RS17530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17530
old locus tag: KXZ80_17530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013275305.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1659 domain-containing protein
translation: MPDMKLAPNASEVAQMSALRIKYDCGLGDNGRTIVKTRSFSNVKNDAKVVDVYNVAEILNGLQKHDVLSVVKIDNTELTPAN
SIO_010081: KXZ80_RS17530
subclass of: SO_0000673
so part of: KXZ80_RS17530
location: 7590..7838
location: region:7590-7838:1
so has part: feature:7590-7838:1:exon

WP_021430640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7590-7838:1:exon

KXZ80_RS17535
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17535
old locus tag: KXZ80_17535
so part of: sequence
location: 7908..8141
location: region:7908-8141:1
so has part: feature:7908-8141:1:exon
subclass of: SO_0000010

67474544
type: Gene
SIO_000068: ncbigene

position:7908:1
position: 7908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8141:1
position: 8141
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7908-8141:1:exon

KXZ80_RS17535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17535
old locus tag: KXZ80_17535
inference: COORDINATES: protein motif:HMM:NF022597.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2922 domain-containing protein
translation: MRNIETRLLMVFSTTLGRKVSLFVSDPKEDITEAEIKEAMDQIVAKNVFAPRFGEELETALEAKVVQTATTGYDLVI
SIO_010081: KXZ80_RS17535
subclass of: SO_0000673
so part of: KXZ80_RS17535
location: 7908..8141
location: region:7908-8141:1
so has part: feature:7908-8141:1:exon

WP_021434414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7908-8141:1:exon

KXZ80_RS17540
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17540
old locus tag: KXZ80_17540
so part of: sequence
location: 8218..8373
location: region:8218-8373:1
so has part: feature:8218-8373:1:exon
subclass of: SO_0000010

67474545
type: Gene
SIO_000068: ncbigene

position:8218:1
position: 8218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8373:1
position: 8373
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8218-8373:1:exon

KXZ80_RS17540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17540
old locus tag: KXZ80_17540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018591228.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YvrJ family protein
translation: MELDLMALVSNLGFPAIVTMYLLIRIEGKLENLSTSINSLSSNIYELNNKK
SIO_010081: KXZ80_RS17540
subclass of: SO_0000673
so part of: KXZ80_RS17540
location: 8218..8373
location: region:8218-8373:1
so has part: feature:8218-8373:1:exon

WP_021430642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8218-8373:1:exon

KXZ80_RS17545
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17545
old locus tag: KXZ80_17545
so part of: sequence
location: complement(8473..9426)
location: region:8473-9426:-1
so has part: feature:8473-9426:-1:exon
subclass of: SO_0000010

67474546
type: Gene
SIO_000068: ncbigene

position:8473:-1
position: 8473
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9426:-1
position: 9426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8473-9426:-1:exon

KXZ80_RS17545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17545
old locus tag: KXZ80_17545
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MERTLKIQILKIKDVIESEDCADTAKQLRKRTLKEFKNFMLENDKNFDEINKHDVINLAKRLKSRSYSYLNIQIDSLNYILKHANREDLYLHVNGIHKSYNRENKEFDIKENIIDTSDRYYTREEIQGVCKKLINPVDKFIIYGLFCGINGKERAELLNLKKDQVNFENNTILLSDRIVYIDEYMGTVLKSTLDESCGKIYFKHLDDTVEGSTSDSFELNFKSPYVIKTKPYSKNNYGIQPMKLAGFNQRIKTLNIYLQDFKLVPRDIVRSGIIDRMYRIKKEGWTQGQVEEFLKQNNIRSQAFELKRIFEMKYNKK
SIO_010081: KXZ80_RS17545
subclass of: SO_0000673
so part of: KXZ80_RS17545
location: complement(8473..9426)
location: region:8473-9426:-1
so has part: feature:8473-9426:-1:exon

WP_021434403.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8473-9426:-1:exon

KXZ80_RS17550
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17550
old locus tag: KXZ80_17550
so part of: sequence
location: complement(9576..10079)
location: region:9576-10079:-1
so has part: feature:9576-10079:-1:exon
subclass of: SO_0000010

67474547
type: Gene
SIO_000068: ncbigene

position:9576:-1
position: 9576
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10079:-1
position: 10079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9576-10079:-1:exon

KXZ80_RS17550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17550
old locus tag: KXZ80_17550
inference: COORDINATES: protein motif:HMM:NF038353.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: FxLYD domain-containing protein
translation: MKVKSIKKISTGIALVSIISLFTVGCGNEVSNTNDSNKETTKNSQKNDFETCNILKFENLGKEKYDEYNDDYENIVVDVKNDSKKDLRDIQVTFGIYDKSGKLIKNEVGQIENTLKPNSVAKVECMVSKLEDNLEIKVDSYSYYINEKDMVEVDLIGMVVQFYETLN
SIO_010081: KXZ80_RS17550
subclass of: SO_0000673
so part of: KXZ80_RS17550
location: complement(9576..10079)
location: region:9576-10079:-1
so has part: feature:9576-10079:-1:exon

WP_021434407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9576-10079:-1:exon

KXZ80_RS17555
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17555
old locus tag: KXZ80_17555
so part of: sequence
location: complement(10484..10738)
location: region:10484-10738:-1
so has part: feature:10484-10738:-1:exon
subclass of: SO_0000010

67474548
type: Gene
SIO_000068: ncbigene

position:10484:-1
position: 10484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10738:-1
position: 10738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10484-10738:-1:exon

KXZ80_RS17555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17555
old locus tag: KXZ80_17555
inference: COORDINATES: protein motif:HMM:NF020345.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mor transcription activator family protein
translation: MDLKMSDLPPQFENIAMEIGIDRVKALFKEFGGTSVYFPTEKMIYKEARDREIIEEFNGFNVKELASKYRMSESYVRAIIRKNK
SIO_010081: KXZ80_RS17555
subclass of: SO_0000673
so part of: KXZ80_RS17555
location: complement(10484..10738)
location: region:10484-10738:-1
so has part: feature:10484-10738:-1:exon

WP_021434410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10484-10738:-1:exon

KXZ80_RS17560
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17560
old locus tag: KXZ80_17560
so part of: sequence
location: complement(11002..12291)
location: region:11002-12291:-1
so has part: feature:11002-12291:-1:exon
subclass of: SO_0000010

67474549
type: Gene
SIO_000068: ncbigene

position:11002:-1
position: 11002
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12291:-1
position: 12291
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11002-12291:-1:exon

KXZ80_RS17560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17560
old locus tag: KXZ80_17560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007063229.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGMKEFCDHLYDDSTDGYIQVLKLNDEKNKSERTIKIYNTRHEGLKDIVEELHEQNDVFVAPNTMYIPKRRVENIRQFRSLFQDIDCENLGLEKAETVYLIWELYLEGKIPKPTMVTDSGRGVHLYWRIKNAPYGALNTWQELQDYIYYNLKHLGADRQATDSARVLRLPGTINSKNQVNCKVLYIDDDLEYSMYDLREQYLNYRPKSYQLQMQDTKVVENKVVSNRFFNSYSLHMQRANDLQTLCRLRHFDMKGYRNMAIHCYAYWKGIYVRDQYELEKEVIELNNAFKEPLKETEVKAVLRCIPKAIEKFIAYEQGLRSGEKKRVSKGMRDKEGYWYKNTTLIERLGITANEQKHMKTIIGTDEKYERNNERRRAERRNKSGLTKKQQELADFKLQVSRLKEQGLSNRAVAKELNCSEYKIRSLLKK
SIO_010081: KXZ80_RS17560
subclass of: SO_0000673
so part of: KXZ80_RS17560
location: complement(11002..12291)
location: region:11002-12291:-1
so has part: feature:11002-12291:-1:exon

WP_021434406.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11002-12291:-1:exon

KXZ80_RS17565
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17565
old locus tag: KXZ80_17565
so part of: sequence
location: complement(12839..13075)
location: region:12839-13075:-1
so has part: feature:12839-13075:-1:exon
subclass of: SO_0000010

67474550
type: Gene
SIO_000068: ncbigene

position:12839:-1
position: 12839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13075:-1
position: 13075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12839-13075:-1:exon

KXZ80_RS17565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17565
old locus tag: KXZ80_17565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTWIEALKTGREIEFEYNNRVYFIGNYDEGRCICNDENEEITKYYTDIDLFLSEASINEYSLSQLIKSGNIKIVTIF
SIO_010081: KXZ80_RS17565
subclass of: SO_0000673
so part of: KXZ80_RS17565
location: complement(12839..13075)
location: region:12839-13075:-1
so has part: feature:12839-13075:-1:exon

WP_021434411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12839-13075:-1:exon

KXZ80_RS17570
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17570
old locus tag: KXZ80_17570
so part of: sequence
location: complement(13087..13737)
location: region:13087-13737:-1
so has part: feature:13087-13737:-1:exon
subclass of: SO_0000010

67474551
type: Gene
SIO_000068: ncbigene

position:13087:-1
position: 13087
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13737:-1
position: 13737
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13087-13737:-1:exon

KXZ80_RS17570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17570
old locus tag: KXZ80_17570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003758181.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKTIRKIAFALSFTMFVSSFGMISNVYALDELSEEVYHTEEYQDYQVDDLILTDKEIEMANLYIQEQIDLGNKVRQKRSAIGYVGSLFIPGVGTAVITATGVVIVSGVAIASGSWLYKKVTNYVKTETINKYNSGKRNGHAALIHSTQYGGSLPVKGKPNSSKDLRDSSGLKQRRYYDKNGNAELDIDYRHGGNGKEPFPHKHKWTNGKRGKWFK
SIO_010081: KXZ80_RS17570
subclass of: SO_0000673
so part of: KXZ80_RS17570
location: complement(13087..13737)
location: region:13087-13737:-1
so has part: feature:13087-13737:-1:exon

WP_021434400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13087-13737:-1:exon

KXZ80_RS17575
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17575
old locus tag: KXZ80_17575
so part of: sequence
location: complement(13922..14530)
location: region:13922-14530:-1
so has part: feature:13922-14530:-1:exon
subclass of: SO_0000010

67474552
type: Gene
SIO_000068: ncbigene

position:13922:-1
position: 13922
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14530:-1
position: 14530
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13922-14530:-1:exon

KXZ80_RS17575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17575
old locus tag: KXZ80_17575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003453413.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MRKFFYARISTKDQTLERQIVEAKKIGIEEEYIFLEVASGKDFKRPEYQLLKRMLREGDVLYIKSLDRLGRNKQMILDEWNELVKVKKVDIVILDMPLLDTTKYKDMNGLENLISDIILQLLSYMAEDERLRTKERQREGIKIAREKGIKFGRRKIDPGEKFEEVYKEWKSGEITAVKAMEILELKSNTFYRRVKEYEIKNK
SIO_010081: KXZ80_RS17575
subclass of: SO_0000673
so part of: KXZ80_RS17575
location: complement(13922..14530)
location: region:13922-14530:-1
so has part: feature:13922-14530:-1:exon

WP_021434415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13922-14530:-1:exon

KXZ80_RS17580
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17580
old locus tag: KXZ80_17580
so part of: sequence
location: complement(14817..15038)
location: region:14817-15038:-1
so has part: feature:14817-15038:-1:exon
subclass of: SO_0000010

67474553
type: Gene
SIO_000068: ncbigene

position:14817:-1
position: 14817
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15038:-1
position: 15038
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14817-15038:-1:exon

KXZ80_RS17580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17580
old locus tag: KXZ80_17580
inference: COORDINATES: protein motif:HMM:NF018862.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1413 domain-containing protein
translation: MDLLSRAIGRLETLDSNTQFILEDLFTSKEWSNLQNLNQTYSLGRSFKKVVDLNVLSVEALPDNGGTQRYKKI
SIO_010081: KXZ80_RS17580
subclass of: SO_0000673
so part of: KXZ80_RS17580
location: complement(14817..15038)
location: region:14817-15038:-1
so has part: feature:14817-15038:-1:exon

WP_021434417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14817-15038:-1:exon

KXZ80_RS17585
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17585
old locus tag: KXZ80_17585
so part of: sequence
location: complement(15076..16746)
location: region:15076-16746:-1
so has part: feature:15076-16746:-1:exon
subclass of: SO_0000010

67474554
type: Gene
SIO_000068: ncbigene

position:15076:-1
position: 15076
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16746:-1
position: 16746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15076-16746:-1:exon

KXZ80_RS17585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17585
old locus tag: KXZ80_17585
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKDLELLLNIDAIKNKNKEPRLRIIKKECSHLEVPKSEIGLFSSNYISSLIDDRYKIEENFNSDILDLDEVNEVSKGDIEKILKELSKNIDENSIEELINTCKNSAIESIIGPFGLSKAMIEDINGGNVTTLHNFEEQAKLIKNADKDNRENVTQIVATKDDLNKSKEFVESNENFDRKKYEGKGFKEKRKKRLQCEGPLIDEYTGKEIYKDGRSHLDHRVAAKEINEDSKNHLFMDENQRREMAIDNKNLSMTSGALNQSKGKQSMEDFLDNTDKSGATKGMTKEEKYGIDREKALEKDREAREHIQKTQNQAKKEKYKKELKSTSLKQGLKQGSQQAIGVVLNSFVDASFIEINDLIKSRRNNRKVIDKTFFAELKIRLTNIKNKVLKSFSYVIEKFAIGFISGIVSNLITFIINSFMTTYKNMVRIIREGMMSLIKALKMIVTPSNDVSKAERLHEASKIIASAVVICGGIMIEDSLKKYLGIFPFSDKILDVCMGMITGLLTIFTVYAIDKLDIFKVDRNKKLDLVIEKLDKDREERDLYLDNIINQYELV
SIO_010081: KXZ80_RS17585
subclass of: SO_0000673
so part of: KXZ80_RS17585
location: complement(15076..16746)
location: region:15076-16746:-1
so has part: feature:15076-16746:-1:exon

WP_021434412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15076-16746:-1:exon

KXZ80_RS17590
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17590
old locus tag: KXZ80_17590
so part of: sequence
location: complement(16762..17403)
location: region:16762-17403:-1
so has part: feature:16762-17403:-1:exon
subclass of: SO_0000010

67474555
type: Gene
SIO_000068: ncbigene

position:16762:-1
position: 16762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17403:-1
position: 17403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16762-17403:-1:exon

KXZ80_RS17590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17590
old locus tag: KXZ80_17590
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: glycine zipper family protein
translation: MDFVKTATGVIGGAAVGITGILLSPFFGAATFITGAGIAVGAGVGAILGYAVSVEEKNEIERQKKDIESRLKAENKVREDQYKIIIEKRKAEYDTLKSRYETTISKFKKDDKVMMSLFAIGVSAISINEKFGSEDMKFLKTILYGVSSDLIKDETQDILNKLSENPVEWTEALRIAKYELNNEEKEVLNNLLMLIASKYKNMYACIIDLESVI
SIO_010081: KXZ80_RS17590
subclass of: SO_0000673
so part of: KXZ80_RS17590
location: complement(16762..17403)
location: region:16762-17403:-1
so has part: feature:16762-17403:-1:exon

WP_021434399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16762-17403:-1:exon

KXZ80_RS17595
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17595
old locus tag: KXZ80_17595
so part of: sequence
location: complement(17479..18006)
location: region:17479-18006:-1
so has part: feature:17479-18006:-1:exon
subclass of: SO_0000010

67474556
type: Gene
SIO_000068: ncbigene

position:17479:-1
position: 17479
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18006:-1
position: 18006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17479-18006:-1:exon

KXZ80_RS17595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17595
old locus tag: KXZ80_17595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002270382.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MTNKIDIEQQIKSLQEHLHSIRKIAGWTAEDLGNRIGVTKQTISNIENNKVRLTQTQYIAIRSVLEYEIKENPENIVLQQVITLLLDNENCDSKKEEEIKKVVETIAATASGGIRGAQLAALAGALLGPIGAIGAVGVGIGGVARVAGVAGAALGWLSPFMVNKKIKKENQKKDK
SIO_010081: KXZ80_RS17595
subclass of: SO_0000673
so part of: KXZ80_RS17595
location: complement(17479..18006)
location: region:17479-18006:-1
so has part: feature:17479-18006:-1:exon

WP_021434413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17479-18006:-1:exon

KXZ80_RS17600
type: Gene
subclass of: SO_0000704
RO_0002162: 1490
locus tag: KXZ80_RS17600
old locus tag: KXZ80_17600
so part of: sequence
location: complement(18197..19543)
location: region:18197-19543:-1
so has part: feature:18197-19543:-1:exon
subclass of: SO_0000010

67474557
type: Gene
SIO_000068: ncbigene

position:18197:-1
position: 18197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19543:-1
position: 19543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18197-19543:-1:exon

KXZ80_RS17600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1490
locus tag: KXZ80_RS17600
old locus tag: KXZ80_17600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003290821.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Sau3AI family type II restriction endonuclease
translation: MKFKTQEELLRFTKGILGKKFKDIDEQNLLATKKKDKGILGKVVETGFYGYDLNSNPEADFSEIGIELKVAGFKRNKDNSISAKERLVLSKIDYCKMIEEEFEFSKLLFKNKKLLIIWYEYDYENKDNYGNFEIKHYQLYNMSADEEVFKNDFNIIKEKVLNGEAHLLSEGDTAYLGACTKGAKGTDQTKQPKSEILAKPRAYSLKNGYMTGILRSIDVSKQIPVKFKTAYSYVTEKLSPYFGLNQKEIWERLTGIKLEVGDPIPKNLNKMISDRIVGKDKELKEIDDVFNKVTYIIKNIPVDENNYPMERLSFRNLYLSEFEDDWIDSDWAEYFEEINIILVRYEGKKDGKKLKNGDRILKDVVSLTFNAYDIDLFKHSYEMVQTAIKTKDISKLPYPKSYEDQVLEIAPKGKGGDDAYNNFLSKDFTKTCFMLDKDFVNYKINEKE
SIO_010081: KXZ80_RS17600
subclass of: SO_0000673
so part of: KXZ80_RS17600
location: complement(18197..19543)
location: region:18197-19543:-1
so has part: feature:18197-19543:-1:exon

WP_021434420.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18197-19543:-1:exon