Falco naumanni isolate bFalNau1 chromosome 23, bFalNau1.pat, whole genome shotgun sequence.
type: Entry
definition: Falco naumanni isolate bFalNau1 chromosome 23, bFalNau1.pat, whole genome shotgun sequence.
sequence version: NC_054076.1
sequence date: 2021-04-08
sequence: sequence
division: CON
label: NC_054076.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA719130
dblink: SAMN16870685
keyword: WGS
keyword: RefSeq
source: Falco naumanni (lesser kestrel)
organism: Falco naumanni
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Falconiformes; Falconidae; Falco.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM030167.1.\nAssembly name: bFalNau1.pat\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/03/30. The original whole-genome shotgun project has the\naccession JAGFVS000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 14-JUL-2020\nAssembly Method :: TrioCanu v. 1.8; purge_dups v. 1.0.0;\n Scaff 10x v. 4.1.0; Bionano solve v.\n 3.2.1_04122018; Salsa2 HiC v. 2.2; pbgcpp\n v. 1.9.0; Freebayes v. 1.3.1; gEVAL\n manual curation v. 2020-07-14; VGP trio\n assembly pipeline v. 1.6\nAssembly Name :: bFalNau1.pat\nDiploid :: Principal pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 104.34x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Falco naumanni Annotation Release\n 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 8.6\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 304746
topology: linear
so has quality: SO_0000987
location: 1..304746
location: region:1-304746:1
RO_0002162: 148594

NC_054076
type: RefSeq
SIO_000068: refseq

PRJNA719130
type: BioProject
SIO_000068: bioproject

SAMN16870685
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:304746:1
position: 304746
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-304746:1:source
so part of: sequence
organism: Falco naumanni
mol type: genomic DNA
isolate: bFalNau1
specimen voucher: P51P2 - H187058 (nest 2016-P51)
chromosome: 23
sex: female
tissue type: blood
dev stage: juvenile
country: Italy: Matera
lat lon: 40.67 N 16.60 E
collection date: 2016-06-25
collected by: Diego Rubolini

148594
type: Taxonomy
SIO_000068: taxonomy

LOC121080225
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080225
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(17836..>21700)
location: region:17836-21700:-1
so has part: feature:17836-21700:-1:exon
subclass of: SO_0000010

121080225
type: Gene
SIO_000068: ncbigene

position:17836:-1
position: 17836
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21700:-1
position: 21700
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17836-21700:-1:exon

LOC121080225
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 148594
gene: LOC121080225
product: ribosome-binding protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XM_040578080.1
SIO_010081: LOC121080225
subclass of: SO_0000673
so part of: LOC121080225
location: complement(join(17836..18082,18879..18997,19334..19486,20501..20623,20850..20998,21544..>21700))
location: region:17836-21700:-1
so has part: feature:21544-21700:-1:exon
so has part: feature:20850-20998:-1:exon
so has part: feature:20501-20623:-1:exon
so has part: feature:19334-19486:-1:exon
so has part: feature:18879-18997:-1:exon
so has part: feature:17836-18082:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21544-21700:-1:exon

position:21544:-1
position: 21544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:20850-20998:-1:exon

position:20850:-1
position: 20850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20998:-1
position: 20998
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:20501-20623:-1:exon

position:20501:-1
position: 20501
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20623:-1
position: 20623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:19334-19486:-1:exon

position:19334:-1
position: 19334
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19486:-1
position: 19486
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:18879-18997:-1:exon

position:18879:-1
position: 18879
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18997:-1
position: 18997
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:17836-18082:-1:exon

position:18082:-1
position: 18082
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121080225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 148594
gene: LOC121080225
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosome-binding protein 1-like
translation: QEKPNGKVPEAHQSAPVVSSVTIKKSNVLPAHEEQKHNGPVKKAAASKKSEPAPADSDGPLYLPYKTLVSAVSSTVFSEGEAQQLIEILTEKAGIVQDTWHAAKQKGDPVTVLKRQLEEKEKQLATEQEAAAAARNKVEELSQELAAERAKATAVEGKLKEQLLAREQEMAAVQARMQASYQDHVSETQQLQGKIRTLQEQLENGPDTQLARLQQENSILSDAFCQIRSQMESKQNAEVARLQEWCGKLMNELSEKSEVLQQEKQLRKSWKMKVAALERQMEQLQVRQAPANLLPPGVRVGGKPRWCAVLGGSLR
SIO_010081: LOC121080225
subclass of: SO_0000673
so part of: LOC121080225
location: complement(join(17836..18082,18879..18997,19334..19486,20501..20623,20850..20998,21544..>21700))
location: region:17836-21700:-1
so has part: feature:21544-21700:-1:exon
so has part: feature:20850-20998:-1:exon
so has part: feature:20501-20623:-1:exon
so has part: feature:19334-19486:-1:exon
so has part: feature:18879-18997:-1:exon
so has part: feature:17836-18082:-1:exon

XP_040434014.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21544-21700:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:20850-20998:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:20501-20623:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:19334-19486:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:18879-18997:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:17836-18082:-1:exon

LOC121080237
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080237
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(37890..42611)
location: region:37890-42611:-1
so has part: feature:37890-42611:-1:exon
subclass of: SO_0000011

121080237
type: Gene
SIO_000068: ncbigene

position:37890:-1
position: 37890
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42611:-1
position: 42611
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37890-42611:-1:exon

LOC121080237
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 148594
nc RNA class: lncRNA
gene: LOC121080237
product: uncharacterized LOC121080237
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XR_005825308.1
SIO_010081: LOC121080237
subclass of: SO_0000673
so part of: LOC121080237
location: complement(join(37890..38322,42543..42611))
location: region:37890-42611:-1
so has part: feature:42543-42611:-1:exon
so has part: feature:37890-38322:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42543-42611:-1:exon

position:42543:-1
position: 42543
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:37890-38322:-1:exon

position:38322:-1
position: 38322
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

TRNAL-CAA
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: TRNAL-CAA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 48695..48802
location: region:48695-48802:1
so has part: feature:48695-48802:1:exon
subclass of: SO_0000663

121080239
type: Gene
SIO_000068: ncbigene

position:48695:1
position: 48695
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:48802:1
position: 48802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:48695-48802:1:exon

TRNAL-CAA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 148594
gene: TRNAL-CAA
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:48729..48731,aa:Leu,seq:caa)
SIO_010081: TRNAL-CAA
subclass of: SO_0000673
so part of: TRNAL-CAA
location: join(48695..48732,48757..48802)
location: region:48695-48802:1
so has part: feature:48695-48732:1:exon
so has part: feature:48757-48802:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:48695-48732:1:exon

position:48732:1
position: 48732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:48757-48802:1:exon

position:48757:1
position: 48757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121080226
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080226
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 56737..60290
location: region:56737-60290:1
so has part: feature:56737-60290:1:exon
subclass of: SO_0000010

121080226
type: Gene
SIO_000068: ncbigene

position:56737:1
position: 56737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:60290:1
position: 60290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56737-60290:1:exon

LOC121080226
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 148594
gene: LOC121080226
product: kinesin-like protein KIF20B
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 91% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_040578081.1
SIO_010081: LOC121080226
subclass of: SO_0000673
so part of: LOC121080226
location: join(56737..59132,60097..60290)
location: region:56737-60290:1
so has part: feature:56737-59132:1:exon
so has part: feature:60097-60290:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:56737-59132:1:exon

position:59132:1
position: 59132
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:60097-60290:1:exon

position:60097:1
position: 60097
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121080226
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 148594
gene: LOC121080226
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: kinesin-like protein KIF20B
translation: MEPTLDNVQILRPSYIASVEPLERTGPVNVEDIKADLSADFSLVSSSSDRSQRSSLESKGHIEVCLRIRPFTSLERENEFQGCISLEDSRSVILKPPKNSLSRLSEKTSGQMMQKFTFSRVFGPETTQEEFFEGTMKQPVQDFLNGCNRLIFTYGVTNAGKTYTFQGTEDDAGILPRAMDLLFKSIQGKLYTTMDIKPHRCRDYIKLTKDQVREETSIKNSILELTKEVDHQNSSNNKAPIDSEDVEELLDLEQSSTTLKDYTKFSVWVSFFEIYNECFYDLLLPMSNDKKRKTLRLAQDIKGCSYVKDLQWVQISDSKEAFRLLKLGLKHQSIASTKLNATSSRSHSIFTVKVLKIEDSGTPRVTRVNELSMCDLAGSERYTKTRNEGDRLKESGNINNSLLILGKCINALKNCQQSKLQQHIPFRESKLTHFLQGFFRGKGKVYMVVNVSQCASAYDETLNVLKFSAVAQKVLVMDTSVLPQDQSFGQKAAKESLRSHTKMPRKRATILWDRSLEDVIEDDEMEEQHYTSGEAAVQKHEENKVLIGEEKYMMLLNLIEELKNRLITEKKNKLLLELKVREEVTQEFAKYFAEQERDFKVRLSQEREQLEENSERRLEIFKELVNGYNKNADEENKLKDQPCSEQAGPLDEEYSIRSGTHIGFEGIIDSLHNDVTDLRKQAEEAHKYLVSLGVPQEAIGWLEEQLGKLTIELTKTKEELAKKTKDLEMQMAKLGESAEQLKEATEKMNTQNKRIQELMDIVEQKDEQLKEATEKMNTQNKRIQEPISLKHQSTSLFYIEQEHIVSPEDTIYEGGDHGRIKFFIRNCFNNRLNILRVYWRVDTLSPVRHPDRER
SIO_010081: LOC121080226
subclass of: SO_0000673
so part of: LOC121080226
location: join(56762..59132,60097..60290)
location: region:56762-60290:1
so has part: feature:56762-59132:1:exon
so has part: feature:60097-60290:1:exon

XP_040434015.1
type: Protein
SIO_000068: ncbiprotein

position:56762:1
position: 56762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:56762-59132:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:60097-60290:1:exon

TRNAL-CAA
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: TRNAL-CAA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 63116..63223
location: region:63116-63223:1
so has part: feature:63116-63223:1:exon
subclass of: SO_0000663

121080240
type: Gene
SIO_000068: ncbigene

position:63116:1
position: 63116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:63223:1
position: 63223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:63116-63223:1:exon

TRNAL-CAA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 148594
gene: TRNAL-CAA
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:63150..63152,aa:Leu,seq:caa)
SIO_010081: TRNAL-CAA
subclass of: SO_0000673
so part of: TRNAL-CAA
location: join(63116..63153,63178..63223)
location: region:63116-63223:1
so has part: feature:63116-63153:1:exon
so has part: feature:63178-63223:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:63116-63153:1:exon

position:63153:1
position: 63153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:63178-63223:1:exon

position:63178:1
position: 63178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRNAL-CAA
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: TRNAL-CAA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 66943..67050
location: region:66943-67050:1
so has part: feature:66943-67050:1:exon
subclass of: SO_0000663

121080241
type: Gene
SIO_000068: ncbigene

position:66943:1
position: 66943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:67050:1
position: 67050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66943-67050:1:exon

TRNAL-CAA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 148594
gene: TRNAL-CAA
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:66977..66979,aa:Leu,seq:caa)
SIO_010081: TRNAL-CAA
subclass of: SO_0000673
so part of: TRNAL-CAA
location: join(66943..66980,67005..67050)
location: region:66943-67050:1
so has part: feature:66943-66980:1:exon
so has part: feature:67005-67050:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:66943-66980:1:exon

position:66980:1
position: 66980
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:67005-67050:1:exon

position:67005:1
position: 67005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRNAL-CAA
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: TRNAL-CAA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 70772..70879
location: region:70772-70879:1
so has part: feature:70772-70879:1:exon
subclass of: SO_0000663

121080242
type: Gene
SIO_000068: ncbigene

position:70772:1
position: 70772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:70879:1
position: 70879
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70772-70879:1:exon

TRNAL-CAA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 148594
gene: TRNAL-CAA
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:70806..70808,aa:Leu,seq:caa)
SIO_010081: TRNAL-CAA
subclass of: SO_0000673
so part of: TRNAL-CAA
location: join(70772..70809,70834..70879)
location: region:70772-70879:1
so has part: feature:70772-70809:1:exon
so has part: feature:70834-70879:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:70772-70809:1:exon

position:70809:1
position: 70809
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:70834-70879:1:exon

position:70834:1
position: 70834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

TRNAL-CAA
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: TRNAL-CAA
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
so part of: sequence
location: 74610..74717
location: region:74610-74717:1
so has part: feature:74610-74717:1:exon
subclass of: SO_0000663

121080243
type: Gene
SIO_000068: ncbigene

position:74610:1
position: 74610
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:74717:1
position: 74717
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:74610-74717:1:exon

TRNAL-CAA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 148594
gene: TRNAL-CAA
product: tRNA-Leu
inference: COORDINATES: profile:tRNAscan-SE:2.0.4
note: transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:74644..74646,aa:Leu,seq:caa)
SIO_010081: TRNAL-CAA
subclass of: SO_0000673
so part of: TRNAL-CAA
location: join(74610..74647,74672..74717)
location: region:74610-74717:1
so has part: feature:74610-74647:1:exon
so has part: feature:74672-74717:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:74610-74647:1:exon

position:74647:1
position: 74647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:74672-74717:1:exon

position:74672:1
position: 74672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121080236
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080236
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 135621..140120
location: region:135621-140120:1
so has part: feature:135621-140120:1:exon
subclass of: SO_0000011

121080236
type: Gene
SIO_000068: ncbigene

position:135621:1
position: 135621
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:140120:1
position: 140120
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:135621-140120:1:exon

LOC121080236
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 148594
nc RNA class: lncRNA
gene: LOC121080236
product: uncharacterized LOC121080236
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
transcript id: XR_005825307.1
SIO_010081: LOC121080236
subclass of: SO_0000673
so part of: LOC121080236
location: join(135621..135703,136857..136969,139974..140120)
location: region:135621-140120:1
so has part: feature:135621-135703:1:exon
so has part: feature:136857-136969:1:exon
so has part: feature:139974-140120:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:135621-135703:1:exon

position:135703:1
position: 135703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:136857-136969:1:exon

position:136857:1
position: 136857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:136969:1
position: 136969
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:139974-140120:1:exon

position:139974:1
position: 139974
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121080227
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080227
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: <140222..145073
location: region:140222-145073:1
so has part: feature:140222-145073:1:exon
subclass of: SO_0000010

121080227
type: Gene
SIO_000068: ncbigene

position:140222:1
position: 140222
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:145073:1
position: 145073
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140222-145073:1:exon

LOC121080227
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 148594
gene: LOC121080227
product: ribosome-binding protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XM_040578082.1
SIO_010081: LOC121080227
subclass of: SO_0000673
so part of: LOC121080227
location: join(<140222..140378,140924..141072,141309..141431,142445..142597,142934..143052,143840..143993,144418..144549,144832..145073)
location: region:140222-145073:1
so has part: feature:140222-140378:1:exon
so has part: feature:140924-141072:1:exon
so has part: feature:141309-141431:1:exon
so has part: feature:142445-142597:1:exon
so has part: feature:142934-143052:1:exon
so has part: feature:143840-143993:1:exon
so has part: feature:144418-144549:1:exon
so has part: feature:144832-145073:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:140222-140378:1:exon

position:140378:1
position: 140378
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:140924-141072:1:exon

position:140924:1
position: 140924
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141072:1
position: 141072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:141309-141431:1:exon

position:141309:1
position: 141309
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:141431:1
position: 141431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:142445-142597:1:exon

position:142445:1
position: 142445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:142597:1
position: 142597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:142934-143052:1:exon

position:142934:1
position: 142934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:143052:1
position: 143052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:143840-143993:1:exon

position:143840:1
position: 143840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:143993:1
position: 143993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:144418-144549:1:exon

position:144418:1
position: 144418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:144549:1
position: 144549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:144832-145073:1:exon

position:144832:1
position: 144832
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121080227
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 148594
gene: LOC121080227
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosome-binding protein 1-like
translation: QEKPNGKVPEAHQSAPVVSSVTIKKSNVLPAHEEQKHNGPVKKAAASKKSEPAPADSDGPLYLPYKTLVSTVSSTVFSEGEAQQLIEILTEKAGIVQDTWHAAKQKGDPVTVLKRQLEEKEKQLATKQEAAAAARNKVEELSQELAAERAKATAVEGKLKEQLLAREQEMAAVQARMQASYQDHVSETQQLQGKIRTLQEQLENGPDTQLARLQQENSILSDAFCQIRSQMESKQNAEVARLQEWCGKLMNELSEKSEVLQQEKQLRKSWKMKVAALERQMEQLQEKLGKKKRKNRGQAASELQERLKVTQDQLAKGRMTKCKEQLQETGEEDSLKEGTSA
SIO_010081: LOC121080227
subclass of: SO_0000673
so part of: LOC121080227
location: join(<140222..140378,140924..141072,141309..141431,142445..142597,142934..143052,143840..143993,144418..144549,144832..144870)
location: region:140222-144870:1
so has part: feature:140222-140378:1:exon
so has part: feature:140924-141072:1:exon
so has part: feature:141309-141431:1:exon
so has part: feature:142445-142597:1:exon
so has part: feature:142934-143052:1:exon
so has part: feature:143840-143993:1:exon
so has part: feature:144418-144549:1:exon
so has part: feature:144832-144870:1:exon

XP_040434016.1
type: Protein
SIO_000068: ncbiprotein

position:144870:1
position: 144870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140222-140378:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:140924-141072:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:141309-141431:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:142445-142597:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:142934-143052:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:143840-143993:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:144418-144549:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:144832-144870:1:exon

LOC121080228
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080228
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 169713..170677
location: region:169713-170677:1
so has part: feature:169713-170677:1:exon
subclass of: SO_0000010

121080228
type: Gene
SIO_000068: ncbigene

position:169713:1
position: 169713
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:170677:1
position: 170677
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169713-170677:1:exon

LOC121080228
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 148594
gene: LOC121080228
product: olfactory receptor 14C36-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_040578083.1
SIO_010081: LOC121080228
subclass of: SO_0000673
so part of: LOC121080228
location: 169713..170677
location: region:169713-170677:1
so has part: feature:169713-170677:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:169713-170677:1:exon

LOC121080228
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 148594
gene: LOC121080228
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: olfactory receptor 14C36-like
translation: MPNSSSITQFLLLPFADTRELQLLHFWLSLGIYLAALMANGLIITGVVCDHHLHTPMYVFLLNLSLLDLGSISTTLPKAMASSLCDTRDISYSGCAAQLFLIVFFLSAECSLLTVMAYDRYVAICQPLHYGTLLGSRACVHMAAAAWASGFLCAALHTANTLSLPLCQGNALGQVFCEIPQILKLSCSHTYLREVGLIVASAFLFFGCFVFIVLSYVQIFRAVLRIPSEQGRHKAFSTCLPHLAVVSLFVSTLYFAYLKPPSISSPSLDLVVAVLYSVVPPAVNPLIYSMRNEELKGAMCKLIAGCSSEALTL
SIO_010081: LOC121080228
subclass of: SO_0000673
so part of: LOC121080228
location: 169736..170677
location: region:169736-170677:1
so has part: feature:169736-170677:1:exon

XP_040434017.1
type: Protein
SIO_000068: ncbiprotein

position:169736:1
position: 169736
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:169736-170677:1:exon

LOC121080233
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080233
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 191151..207116
location: region:191151-207116:1
so has part: feature:191151-207116:1:exon
subclass of: SO_0000011

121080233
type: Gene
SIO_000068: ncbigene

position:191151:1
position: 191151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:207116:1
position: 207116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191151-207116:1:exon

LOC121080233
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 148594
nc RNA class: lncRNA
gene: LOC121080233
product: uncharacterized LOC121080233, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005825303.1
SIO_010081: LOC121080233
subclass of: SO_0000673
so part of: LOC121080233
location: join(191151..191708,196236..196464,197885..198177,199934..200397,202488..202651,206985..207116)
location: region:191151-207116:1
so has part: feature:191151-191708:1:exon
so has part: feature:196236-196464:1:exon
so has part: feature:197885-198177:1:exon
so has part: feature:199934-200397:1:exon
so has part: feature:202488-202651:1:exon
so has part: feature:206985-207116:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:191151-191708:1:exon

position:191708:1
position: 191708
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:196236-196464:1:exon

position:196236:1
position: 196236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196464:1
position: 196464
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:197885-198177:1:exon

position:197885:1
position: 197885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:198177:1
position: 198177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:199934-200397:1:exon

position:199934:1
position: 199934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:200397:1
position: 200397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:202488-202651:1:exon

position:202488:1
position: 202488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:202651:1
position: 202651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:206985-207116:1:exon

position:206985:1
position: 206985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121080233
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 148594
nc RNA class: lncRNA
gene: LOC121080233
product: uncharacterized LOC121080233, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transcript id: XR_005825305.1
SIO_010081: LOC121080233
subclass of: SO_0000673
so part of: LOC121080233
location: join(191151..191708,196236..196464,197885..198177,199934..200005,200266..200397,202488..202651,206985..207116)
location: region:191151-207116:1
so has part: feature:191151-191708:1:exon
so has part: feature:196236-196464:1:exon
so has part: feature:197885-198177:1:exon
so has part: feature:199934-200005:1:exon
so has part: feature:200266-200397:1:exon
so has part: feature:202488-202651:1:exon
so has part: feature:206985-207116:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:191151-191708:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196236-196464:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:197885-198177:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:199934-200005:1:exon

position:200005:1
position: 200005
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:200266-200397:1:exon

position:200266:1
position: 200266
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:202488-202651:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:206985-207116:1:exon

LOC121080233
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 148594
nc RNA class: lncRNA
gene: LOC121080233
product: uncharacterized LOC121080233, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
transcript id: XR_005825304.1
SIO_010081: LOC121080233
subclass of: SO_0000673
so part of: LOC121080233
location: join(191151..191708,196236..196464,197885..198177,199934..200397,202488..202651,203877..203919)
location: region:191151-203919:1
so has part: feature:191151-191708:1:exon
so has part: feature:196236-196464:1:exon
so has part: feature:197885-198177:1:exon
so has part: feature:199934-200397:1:exon
so has part: feature:202488-202651:1:exon
so has part: feature:203877-203919:1:exon

position:203919:1
position: 203919
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:191151-191708:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:196236-196464:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:197885-198177:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:199934-200397:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:202488-202651:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:203877-203919:1:exon

position:203877:1
position: 203877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121080234
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080234
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 208314..210748
location: region:208314-210748:1
so has part: feature:208314-210748:1:exon
subclass of: SO_0000010

121080234
type: Gene
SIO_000068: ncbigene

position:208314:1
position: 208314
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210748:1
position: 210748
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208314-210748:1:exon

LOC121080234
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 148594
gene: LOC121080234
product: N-alpha-acetyltransferase 20-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
transcript id: XM_040578087.1
SIO_010081: LOC121080234
subclass of: SO_0000673
so part of: LOC121080234
location: join(208314..208781,209788..209933,210416..210748)
location: region:208314-210748:1
so has part: feature:208314-208781:1:exon
so has part: feature:209788-209933:1:exon
so has part: feature:210416-210748:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:208314-208781:1:exon

position:208781:1
position: 208781
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:209788-209933:1:exon

position:209788:1
position: 209788
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:209933:1
position: 209933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:210416-210748:1:exon

position:210416:1
position: 210416
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121080234
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 148594
gene: LOC121080234
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: N-alpha-acetyltransferase 20-like
translation: MLCTFAALGKAEGSVAGEEWHGHVTALSVAPEFQQLGLAAKLMELLGEISEVKGGFFVDLFVRVSNRVAVNMYKQLGCRVYRTVSERYSASSGEPDEDAYGTRKALCRVTEKKSIIPLPHPVRPEDTE
SIO_010081: LOC121080234
subclass of: SO_0000673
so part of: LOC121080234
location: join(208627..208781,209788..209933,210416..210501)
location: region:208627-210501:1
so has part: feature:208627-208781:1:exon
so has part: feature:209788-209933:1:exon
so has part: feature:210416-210501:1:exon

XP_040434021.1
type: Protein
SIO_000068: ncbiprotein

position:208627:1
position: 208627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210501:1
position: 210501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:208627-208781:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:209788-209933:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:210416-210501:1:exon

LOC121080238
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080238
note: Derived by automated computational analysis using gene prediction method: cmsearch.
so part of: sequence
location: 211951..212035
location: region:211951-212035:1
so has part: feature:211951-212035:1:exon
subclass of: SO_0000578

121080238
type: Gene
SIO_000068: ncbigene

position:211951:1
position: 211951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:212035:1
position: 212035
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:211951-212035:1:exon

LOC121080238
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 148594
nc RNA class: snoRNA
gene: LOC121080238
product: small nucleolar RNA SNORD45
inference: COORDINATES: nucleotide motif:Rfam:12.0:RF00279
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
transcript id: XR_005825309.1
SIO_010081: LOC121080238
subclass of: SO_0000673
so part of: LOC121080238
location: 211951..212035
location: region:211951-212035:1
so has part: feature:211951-212035:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:211951-212035:1:exon

LOC121080229
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080229
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(226936..235800)
location: region:226936-235800:-1
so has part: feature:226936-235800:-1:exon
subclass of: SO_0000010

121080229
type: Gene
SIO_000068: ncbigene

position:226936:-1
position: 226936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:235800:-1
position: 235800
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:226936-235800:-1:exon

LOC121080229
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 148594
gene: LOC121080229
product: ribosome-binding protein 1-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_040578084.1
SIO_010081: LOC121080229
subclass of: SO_0000673
so part of: LOC121080229
location: complement(join(226936..227117,227401..227458,231311..231384,231810..231963,232760..232878,233215..233367,234381..234503,234740..234888,235434..235800))
location: region:226936-235800:-1
so has part: feature:235434-235800:-1:exon
so has part: feature:234740-234888:-1:exon
so has part: feature:234381-234503:-1:exon
so has part: feature:233215-233367:-1:exon
so has part: feature:232760-232878:-1:exon
so has part: feature:231810-231963:-1:exon
so has part: feature:231311-231384:-1:exon
so has part: feature:227401-227458:-1:exon
so has part: feature:226936-227117:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:235434-235800:-1:exon

position:235434:-1
position: 235434
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:234740-234888:-1:exon

position:234740:-1
position: 234740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234888:-1
position: 234888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:234381-234503:-1:exon

position:234381:-1
position: 234381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:234503:-1
position: 234503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:233215-233367:-1:exon

position:233215:-1
position: 233215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:233367:-1
position: 233367
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:232760-232878:-1:exon

position:232760:-1
position: 232760
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:232878:-1
position: 232878
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:231810-231963:-1:exon

position:231810:-1
position: 231810
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:231963:-1
position: 231963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:231311-231384:-1:exon

position:231311:-1
position: 231311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:231384:-1
position: 231384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:227401-227458:-1:exon

position:227401:-1
position: 227401
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:227458:-1
position: 227458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:226936-227117:-1:exon

position:227117:-1
position: 227117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121080229
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 148594
gene: LOC121080229
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: ribosome-binding protein 1-like
translation: MLKVVLFGGLMVVSAIGIFLVFTFAEKVLRPSEEALAKQGKGLKKTQQKEKEKKKKEEAVEKKGKGKKNQEKPNGQVPEAHQSAPVVSSVTIKKSNVLPAHEEQKHNEPVKKVAASKKKSEPAPADSDGPLYLPYKTLVSTVSSTVFSEGEAQQLIEILTEKAGIVQDTWHAAKQKGDPVTVLKRQLEEKEKQLATKQEAAAAARNKVEELSQELAAERAKATAVEGKLKEQLLAREQEMAAVQARMQASYQDHVSETQQLQGKIRTLQEQLENGPDTQLARLQQENSILSDAFCQIRSQMESKQNAEVARLQEWCGKLTNELSEKSEVLQQEKQLRKSWKMKVAALERQMEQLQEKLGKKKRKNRGQAASELQERLKVTQDQLAKGRMKKCKEQLQETGEEDSLKEGTSA
SIO_010081: LOC121080229
subclass of: SO_0000673
so part of: LOC121080229
location: complement(join(227079..227117,227401..227458,231311..231384,231810..231963,232760..232878,233215..233367,234381..234503,234740..234888,235434..235800))
location: region:227079-235800:-1
so has part: feature:235434-235800:-1:exon
so has part: feature:234740-234888:-1:exon
so has part: feature:234381-234503:-1:exon
so has part: feature:233215-233367:-1:exon
so has part: feature:232760-232878:-1:exon
so has part: feature:231810-231963:-1:exon
so has part: feature:231311-231384:-1:exon
so has part: feature:227401-227458:-1:exon
so has part: feature:227079-227117:-1:exon

XP_040434018.1
type: Protein
SIO_000068: ncbiprotein

position:227079:-1
position: 227079
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235434-235800:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:234740-234888:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:234381-234503:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:233215-233367:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:232760-232878:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:231810-231963:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:231311-231384:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:227401-227458:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:227079-227117:-1:exon

LOC121080235
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080235
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(235806..241421)
location: region:235806-241421:-1
so has part: feature:235806-241421:-1:exon
subclass of: SO_0000011

121080235
type: Gene
SIO_000068: ncbigene

position:235806:-1
position: 235806
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:241421:-1
position: 241421
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:235806-241421:-1:exon

LOC121080235
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 148594
nc RNA class: lncRNA
gene: LOC121080235
product: uncharacterized LOC121080235
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transcript id: XR_005825306.1
SIO_010081: LOC121080235
subclass of: SO_0000673
so part of: LOC121080235
location: complement(join(235806..235835,238845..238957,241386..241421))
location: region:235806-241421:-1
so has part: feature:241386-241421:-1:exon
so has part: feature:238845-238957:-1:exon
so has part: feature:235806-235835:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:241386-241421:-1:exon

position:241386:-1
position: 241386
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:238845-238957:-1:exon

position:238845:-1
position: 238845
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:238957:-1
position: 238957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:235806-235835:-1:exon

position:235835:-1
position: 235835
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121080230
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080230
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 242569..254931
location: region:242569-254931:1
so has part: feature:242569-254931:1:exon
subclass of: SO_0000010

121080230
type: Gene
SIO_000068: ncbigene

position:242569:1
position: 242569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:254931:1
position: 254931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242569-254931:1:exon

LOC121080230
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 148594
gene: LOC121080230
product: hydrocephalus-inducing protein homolog
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
transcript id: XM_040578085.1
SIO_010081: LOC121080230
subclass of: SO_0000673
so part of: LOC121080230
location: join(242569..242775,242880..243052,243566..243764,244626..244725,245603..245702,246199..246367,246647..246885,247209..247323,247967..248171,248529..248764,249377..249528,250489..250681,251223..251331,251917..252180,252762..252907,253249..253470,254655..254931)
location: region:242569-254931:1
so has part: feature:242569-242775:1:exon
so has part: feature:242880-243052:1:exon
so has part: feature:243566-243764:1:exon
so has part: feature:244626-244725:1:exon
so has part: feature:245603-245702:1:exon
so has part: feature:246199-246367:1:exon
so has part: feature:246647-246885:1:exon
so has part: feature:247209-247323:1:exon
so has part: feature:247967-248171:1:exon
so has part: feature:248529-248764:1:exon
so has part: feature:249377-249528:1:exon
so has part: feature:250489-250681:1:exon
so has part: feature:251223-251331:1:exon
so has part: feature:251917-252180:1:exon
so has part: feature:252762-252907:1:exon
so has part: feature:253249-253470:1:exon
so has part: feature:254655-254931:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:242569-242775:1:exon

position:242775:1
position: 242775
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:242880-243052:1:exon

position:242880:1
position: 242880
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243052:1
position: 243052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:243566-243764:1:exon

position:243566:1
position: 243566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:243764:1
position: 243764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:244626-244725:1:exon

position:244626:1
position: 244626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:244725:1
position: 244725
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:245603-245702:1:exon

position:245603:1
position: 245603
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:245702:1
position: 245702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:246199-246367:1:exon

position:246199:1
position: 246199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246367:1
position: 246367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:246647-246885:1:exon

position:246647:1
position: 246647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:246885:1
position: 246885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:247209-247323:1:exon

position:247209:1
position: 247209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:247323:1
position: 247323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:247967-248171:1:exon

position:247967:1
position: 247967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248171:1
position: 248171
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:248529-248764:1:exon

position:248529:1
position: 248529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:248764:1
position: 248764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:249377-249528:1:exon

position:249377:1
position: 249377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:249528:1
position: 249528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:250489-250681:1:exon

position:250489:1
position: 250489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:250681:1
position: 250681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:251223-251331:1:exon

position:251223:1
position: 251223
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:251331:1
position: 251331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:251917-252180:1:exon

position:251917:1
position: 251917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:252180:1
position: 252180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:252762-252907:1:exon

position:252762:1
position: 252762
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:252907:1
position: 252907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 16
SIO_000628: feature:253249-253470:1:exon

position:253249:1
position: 253249
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:253470:1
position: 253470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 17
SIO_000628: feature:254655-254931:1:exon

position:254655:1
position: 254655
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC121080230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 148594
gene: LOC121080230
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: hydrocephalus-inducing protein homolog
translation: MKATVSSAAFSPFADRYKALDCPSNCETITILNVTPLEVEAHFSFERDLKADTFLVEPPSMRLKPDEKQKLSIWAYPTSAGLVEDKLVCRIKENPEPVVFPLCCQGVKVELRVSPKHVHFNRLLLHREDSKTLVLRNSTLLPVAWRLCGLENLGEDFSVSQREGIVGPRTEFDVHLYFKPTKALNIEKKIRLEVSDAENILGIVQTENILISAEGYDVAPIINIPKGAGGTVDFGVLKVLDDAKQVLTLRNKGKYEIAYSFQLKAAGTTIPDLASHFTIQPQKGLLAASGRPVQVQVFFHPKTEVNIEDKPILHYQVMEPSICGGGETVAVIPVRVSAKAVFSKYSIHPASLINFGAMVKGSRKTCTFMLENKGSLDFKFLIYRADQDASRLQEKSGCQMKSAHSGKSENLHQRTSSAKKSKRSLQKVASPSMQARVTLGMFTVYPGFGSIPPGGQQMITVDCSVESLGTCEEHLRIDISDRDPQDNPLGIPYTLLAESCLPAFVVDDIESIFEEHRICSNVNLCQTPQTMRDKGVYVRDENKFIFTDVRVGHWATARFKIHNVNKVPCNVVLSIKPIAGEFHSPISDIFKVDPVRMCVPSCSHAFATVTFTPQMMQSYQCTFEASLDVLASPAAIKAQSLTFRVSGDGTLPRVTVLRPVLHSKRGNPLLVFKKLLLGDSQKLPLVLHNGGTLPVQLTIDLLDEAGVFFLKARPTTQCVYQAGGVKEDSPAGERKPHTALLVLLRGELAEFDVLFKPTLAQRVEGRIHLSVVNNPYEETDIQLVGEGYEDDFTLDNIHGLVADSEEEENAEGNLEEDVIEAAARVNHIPFGDCHIGKPYSVTFTITNRSRTEAMRFEWLADTPFHFSPKVGHLHAGCAKAITVTLKSDVAVTFKMHPVKCKVARITFPLPPEQIKDWDDCLHTIKWVDTTMRGPGATWPVKKKVIETDPEPAHTVLEESSREVELCLSAVVDYAELKLDTDTIQCKETLPFQTRTFP
SIO_010081: LOC121080230
subclass of: SO_0000673
so part of: LOC121080230
location: join(242569..242775,242880..243052,243566..243764,244626..244725,245603..245702,246199..246367,246647..246885,247209..247323,247967..248171,248529..248764,249377..249528,250489..250681,251223..251331,251917..252180,252762..252907,253249..253470,254655..254819)
location: region:242569-254819:1
so has part: feature:242569-242775:1:exon
so has part: feature:242880-243052:1:exon
so has part: feature:243566-243764:1:exon
so has part: feature:244626-244725:1:exon
so has part: feature:245603-245702:1:exon
so has part: feature:246199-246367:1:exon
so has part: feature:246647-246885:1:exon
so has part: feature:247209-247323:1:exon
so has part: feature:247967-248171:1:exon
so has part: feature:248529-248764:1:exon
so has part: feature:249377-249528:1:exon
so has part: feature:250489-250681:1:exon
so has part: feature:251223-251331:1:exon
so has part: feature:251917-252180:1:exon
so has part: feature:252762-252907:1:exon
so has part: feature:253249-253470:1:exon
so has part: feature:254655-254819:1:exon

XP_040434019.1
type: Protein
SIO_000068: ncbiprotein

position:254819:1
position: 254819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:242569-242775:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:242880-243052:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:243566-243764:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:244626-244725:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:245603-245702:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:246199-246367:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:246647-246885:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:247209-247323:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:247967-248171:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:248529-248764:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:249377-249528:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:250489-250681:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:251223-251331:1:exon

urn:…
SIO_000300: 14
SIO_000628: feature:251917-252180:1:exon

urn:…
SIO_000300: 15
SIO_000628: feature:252762-252907:1:exon

urn:…
SIO_000300: 16
SIO_000628: feature:253249-253470:1:exon

urn:…
SIO_000300: 17
SIO_000628: feature:254655-254819:1:exon

LOC121080231
type: Gene
subclass of: SO_0000704
RO_0002162: 148594
gene: LOC121080231
note: Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(282041..287419)
location: region:282041-287419:-1
so has part: feature:282041-287419:-1:exon
subclass of: SO_0000010

121080231
type: Gene
SIO_000068: ncbigene

position:282041:-1
position: 282041
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:287419:-1
position: 287419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:282041-287419:-1:exon

LOC121080231
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 148594
gene: LOC121080231
product: vigilin-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 87% coverage of the annotated genomic feature by RNAseq alignments
transcript id: XM_040578086.1
SIO_010081: LOC121080231
subclass of: SO_0000673
so part of: LOC121080231
location: complement(join(282041..282304,283150..283365,283843..284049,285719..285934,286271..286425,287344..287419))
location: region:282041-287419:-1
so has part: feature:287344-287419:-1:exon
so has part: feature:286271-286425:-1:exon
so has part: feature:285719-285934:-1:exon
so has part: feature:283843-284049:-1:exon
so has part: feature:283150-283365:-1:exon
so has part: feature:282041-282304:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:287344-287419:-1:exon

position:287344:-1
position: 287344
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:286271-286425:-1:exon

position:286271:-1
position: 286271
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:286425:-1
position: 286425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:285719-285934:-1:exon

position:285719:-1
position: 285719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:285934:-1
position: 285934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:283843-284049:-1:exon

position:283843:-1
position: 283843
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:284049:-1
position: 284049
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:283150-283365:-1:exon

position:283150:-1
position: 283150
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:283365:-1
position: 283365
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:282041-282304:-1:exon

position:282304:-1
position: 282304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC121080231
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 148594
gene: LOC121080231
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: vigilin-like
translation: MSSVAVLSQESFAKHRSGLTQQQVKVTALNSEEEKDPPTYEEAFPALPEKAPCLEAAREPAGPWSKIRPIKASVITQVFHVPLEERKYKDMDQLGESKQAKICLDIMQKTGAHLELSLAKDQGLSIVVSGKPEAVTKAQQQIVARLQTQASATVAIPKEHHRFVIGKKGEKLQDLKLKTATKMQVPRPDDPSNQIKISGTKEGIEKARHEILLISAEQGKRAVERLDVEKVYHPFIAGPYNKLVRELMQDTGTRIHIPPPSVNKTEIVFTGEKEQLARAVARVKKIYEEKKKKTTTIAVEVKKSQHKYVIGPKGNSLQEILEKTGVSVEIPPIDSSSETLILRGEPEKLGQALTEVYAKVLTRWARPPLKVP
SIO_010081: LOC121080231
subclass of: SO_0000673
so part of: LOC121080231
location: complement(join(282056..282304,283150..283365,283843..284049,285719..285934,286271..286425,287344..287419))
location: region:282056-287419:-1
so has part: feature:287344-287419:-1:exon
so has part: feature:286271-286425:-1:exon
so has part: feature:285719-285934:-1:exon
so has part: feature:283843-284049:-1:exon
so has part: feature:283150-283365:-1:exon
so has part: feature:282056-282304:-1:exon

XP_040434020.1
type: Protein
SIO_000068: ncbiprotein

position:282056:-1
position: 282056
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:287344-287419:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:286271-286425:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:285719-285934:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:283843-284049:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:283150-283365:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:282056-282304:-1:exon