Lichenicola cladoniae strain PAMC 26569 plasmid unnamed7, complete sequence.
type: Entry
definition: Lichenicola cladoniae strain PAMC 26569 plasmid unnamed7, complete sequence.
sequence version: NZ_CP053714.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NZ_CP053714.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14917828
keyword: RefSeq
source: Lichenicola cladoniae
organism: Lichenicola cladoniae
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Lichenicola.
reference: 1
references: 25001073
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP053714.1.\nBacteria and source DNA available from PAMC, Korea Polar Research\nInstitute.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler assembler v. v0.4.8\nAssembly Name :: KOPRI_Lcla_1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 516.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 06:14:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,687\nCDSs (total) :: 5,624\nGenes (coding) :: 5,398\nCDSs (with protein) :: 5,398\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 226\nCDSs (without protein) :: 226\nPseudo Genes (ambiguous residues) :: 0 of 226\nPseudo Genes (frameshifted) :: 81 of 226\nPseudo Genes (incomplete) :: 148 of 226\nPseudo Genes (internal stop) :: 71 of 226\nPseudo Genes (multiple problems) :: 63 of 226\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 29845
topology: circular
so has quality: SO_0000988
location: 1..29845
location: region:1-29845:1
RO_0002162: 1484109

NZ_CP053714
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14917828
type: BioSample
SIO_000068: biosample

1
title: Biodiversity and physiological characteristics of Antarctic and Arctic lichens-associated bacteria
author: Lee, Y.M.
author: Kim, E.H.
author: Lee, H.K.
author: Hong, S.G.
journal: World J Microbiol Biotechnol
volume: 30
issue: 10
pages: 2711-2721
year: 2014
pubmed: 25001073

25001073
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Noh, H.-J.
author: Shin, S.C.
author: Park, Y.
author: Choi, A.
author: Baek, K.
author: Cho, Y.
author: Lee, Y.M.
journal: Submitted (19-MAY-2020) Division of Polar Life Sciences, Korea Polar Research institute, 26 Songdomirae-ro, Incheon 21990, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29845:1
position: 29845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29845:1:source
so part of: sequence
organism: Lichenicola cladoniae
mol type: genomic DNA
strain: PAMC 26569
isolation source: lichen
host: Cladonia borealis
culture collection: PAMC:26569
type material: type strain of Lichenicola cladoniae Noh et al. 2020
plasmid: unnamed7
country: Antarctica
collection date: 2010-02-06
collected by: Yung Mi Lee

1484109
type: Taxonomy
SIO_000068: taxonomy

HN018_RS28060
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28060
old locus tag: HN018_28075
so part of: sequence
location: 1569..2432
location: region:1569-2432:1
so has part: feature:1569-2432:1:exon
subclass of: SO_0000010

position:1569:1
position: 1569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2432:1
position: 2432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1569-2432:1:exon

HN018_RS28060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28060
old locus tag: HN018_28075
inference: COORDINATES: protein motif:HMM:NF013618.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MEEPAFPTYRPARPRPLPLPQIWTTSLLALATTILVPLTAGAATLSLSTFTEDAKGCAQHVAVETLAAVAHTESGFDVLTLHDNSTGRTYHPATREDAIALGVELVTVSRHSVDLGLMQINSGNLPRLGLSVADTFDPCLNLSAADRVLVDGYAAPASGRDTQPAVQQALSRYNTGDPVRGVANGYVGRVQASAELVVPALRVKGDAPPAQPATPADDVAVLAQPLPPSWDVYARAKAGHGQVFGASPVPSPAAVPAALSAALPAPSAPAGPAPGQRLSIEAQNDVR
SIO_010081: HN018_RS28060
subclass of: SO_0000673
so part of: HN018_RS28060
location: 1569..2432
location: region:1569-2432:1
so has part: feature:1569-2432:1:exon

WP_171837890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1569-2432:1:exon

HN018_RS28065
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28065
old locus tag: HN018_28080
so part of: sequence
location: 2563..2997
location: region:2563-2997:1
so has part: feature:2563-2997:1:exon
subclass of: SO_0000010

position:2563:1
position: 2563
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2997:1
position: 2997
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2563-2997:1:exon

HN018_RS28065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28065
old locus tag: HN018_28080
inference: COORDINATES: protein motif:HMM:NF016820.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MNHTTPSEAAAASVTLALAVAGTRLRSTGTRLGAVATGLKDHAARSRVVAPAALVTALVILSMHPAAAQTVTAGGAGSLNTFLTNVMNLITGTTGQVIAVIAIALSGVGAMLGTFSLRTFGGVVLGCAIVFSSAWIVGQITGSA
SIO_010081: HN018_RS28065
subclass of: SO_0000673
so part of: HN018_RS28065
location: 2563..2997
location: region:2563-2997:1
so has part: feature:2563-2997:1:exon

WP_171837891.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2563-2997:1:exon

HN018_RS28070
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28070
old locus tag: HN018_28085
so part of: sequence
location: 2997..3335
location: region:2997-3335:1
so has part: feature:2997-3335:1:exon
subclass of: SO_0000010

position:3335:1
position: 3335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2997-3335:1:exon

HN018_RS28070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28070
old locus tag: HN018_28085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012520252.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein VirB3
translation: MALRGITVDTLFLACTRPAMWQGVPIEAACLNSMGTVMFFIIMKNPCYMLIGVVLHYIVRTVISRDYNIFGVARLWVDTKGRARNAARWGGSSVSPLPLGRARTAREVRIHV
SIO_010081: HN018_RS28070
subclass of: SO_0000673
so part of: HN018_RS28070
location: 2997..3335
location: region:2997-3335:1
so has part: feature:2997-3335:1:exon

WP_171837892.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2997-3335:1:exon

HN018_RS28075
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28075
old locus tag: HN018_28090
so part of: sequence
location: 3328..5727
location: region:3328-5727:1
so has part: feature:3328-5727:1:exon
subclass of: SO_0000010

position:3328:1
position: 3328
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5727:1
position: 5727
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3328-5727:1:exon

HN018_RS28075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28075
old locus tag: HN018_28090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018409499.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB4 family type IV secretion/conjugal transfer ATPase
translation: MFRLGAVAREREPDTYVPFVGHASPGTLLLDDGSKLVMIRLGGIAWETADPELVNARHAQRNILFRNIASDRMVLATHVIRSMADPDEYPIGECRSGFARELDAAYRDRLLDGRLYRNDLFLSVLLRPSQAGGQRVSGLLNRRRRGELNRTPSVPDMERLETAVTTLIAGLAEYKPKRLALRSNARGVVFSEIAEALRLVLTLDRMPVPLVNGHLGGAIYTDRVIIGREAIELRAPGGSTYAAGFGLREYPASTWPGMFDSILAAPYSCVLTQTFAFLNKQVAQDKMTRKQNQMANASDKAASQTVGLSEAADLLQSNAFVMGDHHLTLVAFADTLPALSEVVARARRDLAESGAVVTREDLALEAVYWAQLPGNMRLRSRPGAINSRNFAAMASLHNYPPGPVRGHWGEPLTVFRTTGGTPYRFHLHASTATVTDLGNIFVAGPSGSGKTVWVLFTLALAEKHGATVVYFDKDRGGEILARALGGSYLVLPSGEPSGLAPLKALDASPGNLVFLKQLITGLIAADGAELPPDMDRRLDQGLRQVMSLPPDHRSLGELRAFLGQADANGPGARLEKWCQGGSLGWVLDNDADDVCLDAPFLGFDMTAVLDDPRARGPVMAYLFHRVEALIDGRRVVVAIDEFWKALADEAFRDLVNDKLKTIRKLNGVVILATQSPRDALNSPIAHSIIEQCPTQIFMPNDKADELDYRTGFKLTEGEFEAVQQDLVLPSADGGRRFLLKQGNISVACELNLSGLDDLRAVLSGTNKTVPLMERLIRELGPEPEAWLPAFRQRFRQAAA
SIO_010081: HN018_RS28075
subclass of: SO_0000673
so part of: HN018_RS28075
location: 3328..5727
location: region:3328-5727:1
so has part: feature:3328-5727:1:exon

WP_171837893.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3328-5727:1:exon

HN018_RS28080
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28080
old locus tag: HN018_28095
so part of: sequence
location: 5751..6485
location: region:5751-6485:1
so has part: feature:5751-6485:1:exon
subclass of: SO_0000010

position:5751:1
position: 5751
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6485:1
position: 6485
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5751-6485:1:exon

HN018_RS28080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28080
old locus tag: HN018_28095
inference: COORDINATES: protein motif:HMM:NF019608.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MRIILLAGFAAVTLFASGAAHAQLPVVDGANLLNTAKTVVQGGQQIEQLAAQLKNMEQQLTTAEQTFDSLTHAPTGALASFSSQFNVTALRNIISQDPNTLGTIMNGTTLGAMGPLGQQYASQNRIYQPQASDFAAQQMTTNANSIAGVQALANQLFFSASQHINVIQSLEQTLTDAPDEKTVGDIQARMATEQTYIAAQQVQAQAVQTFQAAQVRNVDEQNAETQRQNIDDVLAADAATSNGS
SIO_010081: HN018_RS28080
subclass of: SO_0000673
so part of: HN018_RS28080
location: 5751..6485
location: region:5751-6485:1
so has part: feature:5751-6485:1:exon

WP_171837894.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5751-6485:1:exon

HN018_RS28085
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28085
old locus tag: HN018_28100
so part of: sequence
location: 6489..6908
location: region:6489-6908:1
so has part: feature:6489-6908:1:exon
subclass of: SO_0000010

position:6489:1
position: 6489
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6908:1
position: 6908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6489-6908:1:exon

HN018_RS28085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28085
old locus tag: HN018_28100
inference: COORDINATES: protein motif:HMM:NF033894.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EexN family lipoprotein
translation: MRHSCTVQVFTLALLALSAPVSAQPVPPEAQRTVEFYVQHPALRSRVNSACLNDPGHLRNAADCWNAHRADLVASARQTHELAGDSSDPRTPAYWTKRPNERRFTLNLCSHMTPEHARADPACAPAASSIVAEQQAATH
SIO_010081: HN018_RS28085
subclass of: SO_0000673
so part of: HN018_RS28085
location: 6489..6908
location: region:6489-6908:1
so has part: feature:6489-6908:1:exon

WP_171837895.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6489-6908:1:exon

HN018_RS28090
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28090
old locus tag: HN018_28105
so part of: sequence
location: 6926..7942
location: region:6926-7942:1
so has part: feature:6926-7942:1:exon
subclass of: SO_0000010

position:6926:1
position: 6926
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7942:1
position: 7942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6926-7942:1:exon

HN018_RS28090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28090
old locus tag: HN018_28105
inference: COORDINATES: protein motif:HMM:NF016491.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MNGSAIFSYIYNTIESPLLDSLGQLMTALVSYAATPVQTAVIIYIALTGILILRGHASEGIGSLVSRAIKLSVVVWFATNGGEYATWVNDFFLVSLPNDLTQAVSSSVSGGTAISANSFDVLLLKSYDAGLQVWKLLHWYDIGEMILIVVFWAIAILACVVTFAIWFISHISLAVFVALGPLMVPLVLFVVTKPIFERWIGAMISAVIVQVVTVILLTITLEVESQLVTQLAGYTGTNPFDQMRTLLAACAFFAFAALLAFQIPGFGTALAGGLHFHTGAIARATLGVATKGVSTLASKAGAISQSADAAMLSGARSVLPRIGPTPGGSLSKASTPRT
SIO_010081: HN018_RS28090
subclass of: SO_0000673
so part of: HN018_RS28090
location: 6926..7942
location: region:6926-7942:1
so has part: feature:6926-7942:1:exon

WP_172443620.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6926-7942:1:exon

HN018_RS28095
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28095
old locus tag: HN018_28110
so part of: sequence
location: 8008..8193
location: region:8008-8193:1
so has part: feature:8008-8193:1:exon
subclass of: SO_0000010

position:8008:1
position: 8008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8193:1
position: 8193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8008-8193:1:exon

HN018_RS28095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28095
old locus tag: HN018_28110
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTFRRLSLALLLPLAVAACDGDPLPIAAGPVRQLNIGRWTPGPNDLAAPPIMPATNNGGPA
SIO_010081: HN018_RS28095
subclass of: SO_0000673
so part of: HN018_RS28095
location: 8008..8193
location: region:8008-8193:1
so has part: feature:8008-8193:1:exon

WP_171837868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8008-8193:1:exon

HN018_RS28100
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28100
old locus tag: HN018_28115
so part of: sequence
location: 8190..8918
location: region:8190-8918:1
so has part: feature:8190-8918:1:exon
subclass of: SO_0000010

position:8190:1
position: 8190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8918:1
position: 8918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8190-8918:1:exon

HN018_RS28100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28100
old locus tag: HN018_28115
inference: COORDINATES: protein motif:HMM:NF016238.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB8/TrbF family protein
translation: MNAIAKRAPVAAFQARPVANDPELLEAYFAQVSSYEGDRLKAAQRSTKLAWSVALAAGIVAATACIAVAGLTPLKTVVPVVFRVDNTTGMVDRVYDVRGGELAATEAERRYFLWQYVLHRQGYNYPEAQRDFDAVNLMSTADVQQLYADWFKGSNPQSPQVLLGRGGSSTVNWVSTSFLGPKLAQVRFTQQERKGDTLLAVKHMVATIGFDFASGPISGSAINVNPDGFLVTSFHADQESPQ
SIO_010081: HN018_RS28100
subclass of: SO_0000673
so part of: HN018_RS28100
location: 8190..8918
location: region:8190-8918:1
so has part: feature:8190-8918:1:exon

WP_171837869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8190-8918:1:exon

HN018_RS28105
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28105
old locus tag: HN018_28120
so part of: sequence
location: 8915..9766
location: region:8915-9766:1
so has part: feature:8915-9766:1:exon
subclass of: SO_0000010

position:8915:1
position: 8915
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9766:1
position: 9766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8915-9766:1:exon

HN018_RS28105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28105
old locus tag: HN018_28120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009859421.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbG/VirB9 family P-type conjugative transfer protein
translation: MRRSLVLATVASCALAGPALAVQTPHAGRYDSRVRVVAYNPMNVVRVIGGTFASTEIMFAPGESITQVAIGDADAWLAGPTGNLLFLKPTEVRAPTNAQVVTRRPDGSFRSYQFELVAHAGTVDEPAAGAQFAINFVYPDDARQEADEADRKRQSGADELVAQNRLAVDFYYGPRNWRYTAQGSTAIQPLEVSDNGRLTAFRFPGNMTLPTIYTVATDGQEGIVPYTMHGDLAVVSTTAREFRLRYGHDVLRVFDLAFNPIGQNPGTGTTDASVVRTVRGAGS
SIO_010081: HN018_RS28105
subclass of: SO_0000673
so part of: HN018_RS28105
location: 8915..9766
location: region:8915-9766:1
so has part: feature:8915-9766:1:exon

WP_171837870.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8915-9766:1:exon

HN018_RS28110
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
gene: virB10
locus tag: HN018_RS28110
old locus tag: HN018_28125
so part of: sequence
location: 9763..10953
location: region:9763-10953:1
so has part: feature:9763-10953:1:exon
subclass of: SO_0000010

position:9763:1
position: 9763
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10953:1
position: 10953
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9763-10953:1:exon

HN018_RS28110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
gene: virB10
locus tag: HN018_RS28110
old locus tag: HN018_28125
inference: COORDINATES: protein motif:HMM:NF038091.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein VirB10
translation: MSGDLPQNPAGPPQAPPPGATILPGERHVSDVAGRSSFSRKQGAIMLGCATGAAVAFILLRPAHKHVDPNAISADRLQVRQVTRYEPALPPPSVVPATYSLPRPVVLAPALPVTTGPAAPSFMQQLGNNKQPVDPLAKARHAGLFVYTGGGAGGAGGGTIGGPEEGNGAARLRGTGPNELAAKLQATPITSVTASVLQHQPYLLTEGTVIGCVLQTAMDSTLPGFTTCIIPQDVIGKSGITLLDRGTKIVGEFHGGMTQGQDRLFVLWTRAETPSGVIINLDSPAADPLGRSGFDGTVDNHFWQRFGGALMLSLVEGGIQAGVAAVSPSGSNYINTGNVSSVASTSLDNSINIRPTLRKNQGELVSIFVARDLDFSTVYQVAATYLAPTDLTGAVR
SIO_010081: HN018_RS28110
subclass of: SO_0000673
so part of: HN018_RS28110
location: 9763..10953
location: region:9763-10953:1
so has part: feature:9763-10953:1:exon

WP_171837871.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9763-10953:1:exon

HN018_RS28115
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
gene: virB11
locus tag: HN018_RS28115
old locus tag: HN018_28130
so part of: sequence
location: 10950..11981
location: region:10950-11981:1
so has part: feature:10950-11981:1:exon
subclass of: SO_0000010

position:10950:1
position: 10950
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11981:1
position: 11981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10950-11981:1:exon

HN018_RS28115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
gene: virB11
locus tag: HN018_RS28115
old locus tag: HN018_28130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010218645.1
GO component: GO:0043684 - type IV secretion system complex [Evidence IEA]
GO process: GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type DNA transfer ATPase VirB11
translation: MRRGERTLRLLLAPIAADLADDAVTEVVINRPGEVGIERRGGWTWRDVPELTFDRLDGIAVLCAAMSSQDVGPDRPLCGSMLPDGQRVQICRPPAVEAGTVSLTIRRPNSFSPSLAVLESGGLFAHTMDAQRRPHPADDELCELHRARDWRRFFALAVRSRKTMLASGDTGSGKTTVAKALIQEIPDDERLVTIEDAAEFNLARRNVVPLFYSKGDQGLAKVRSEELIEAALRMRPDRVLMQELRDGAAFSFIRGVAAGHPGSITTLHAGSAAGAFDALRLMVKQHEAGRHLADPDVRAFLRQLVDVVIHCEKRRDGSRGIREVWFDPDAKLASPAPILVAAE
SIO_010081: HN018_RS28115
subclass of: SO_0000673
so part of: HN018_RS28115
location: 10950..11981
location: region:10950-11981:1
so has part: feature:10950-11981:1:exon

WP_239479506.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10950-11981:1:exon

HN018_RS28120
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28120
old locus tag: HN018_28135
so part of: sequence
location: 11990..14137
location: region:11990-14137:1
so has part: feature:11990-14137:1:exon
subclass of: SO_0000010

position:11990:1
position: 11990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14137:1
position: 14137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11990-14137:1:exon

HN018_RS28120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28120
old locus tag: HN018_28135
inference: COORDINATES: protein motif:HMM:NF014581.2
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MIDLAEWPLPAKAALATLGAAALVALWSVLASTIFLAGTGLIGQHHGLPFADWWLYWWFYGFQHPAVGLWLKLSAGVAIGVPLLLFGIAVARKGLPGSNRLLHGSTQWARRGELRENGLLAGFGGLYLGKLGSRRYLRFDGPEHVACYAPTRSGKGVGLVIPNCLLYEASLVCLDVKKENWAASAGIRARAGQRVYLFDPLSPDGRTARYNPLSYVRRGTIDAIDDIQRIAGMLFPEEQGNGKFFSDSARSAFIGATAYLGETEGSNFSLGSVLRLFTRTSAAPEMLEAMSERAFQGKPYSEPCMTALEDYLSGNADTVADIRKTVTSKLNLWINPRIDAATSESDFDLRDLRRHLCAIYVGVTPDNIARLQPLLSLFFQQLVDLTVQVLPQFDPEAKHQVLMLLDEFPLLGPMPVLANAFSYVAGYNIRMMLVMQSKAQLRDPDLYGPDKATAILDNCGVEVVFGTKNLELAKELSDRLGNDTVSGVSRSGPRFWSAFRSKAANQTESDQARPLLLPQEILMLKKREAIVLRAAMHPCKVRRIRHFKDRFFTRLVIAPPSIQPIEVINRVRRVPDQKAGAQPTAASGATPPAAATQEASPAPTTPAPVKKAAGRDKAKPKAPIGEVCEEMGALPASGSTSQPAASLSANPAPEPAPADTPTLRPHQANGLVAGLMGTNVDLSQYALKDGKAMLASLLDGVPTVESSKRGRSAAA
SIO_010081: HN018_RS28120
subclass of: SO_0000673
so part of: HN018_RS28120
location: 11990..14137
location: region:11990-14137:1
so has part: feature:11990-14137:1:exon

WP_171837872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11990-14137:1:exon

HN018_RS28125
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28125
old locus tag: HN018_28140
so part of: sequence
location: 14137..14388
location: region:14137-14388:1
so has part: feature:14137-14388:1:exon
subclass of: SO_0000010

position:14388:1
position: 14388
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14137-14388:1:exon

HN018_RS28125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28125
old locus tag: HN018_28140
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTMNTQLDNVDVLIPRRFHDAQNAAAAAIRCDLAALIEALPMAPTTLTASLADADAEQGRAWLAAVVRALPTQADMEAGYGTA
SIO_010081: HN018_RS28125
subclass of: SO_0000673
so part of: HN018_RS28125
location: 14137..14388
location: region:14137-14388:1
so has part: feature:14137-14388:1:exon

WP_171837873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14137-14388:1:exon

HN018_RS28130
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28130
old locus tag: HN018_28145
so part of: sequence
location: 14375..15484
location: region:14375-15484:1
so has part: feature:14375-15484:1:exon
subclass of: SO_0000010

position:14375:1
position: 14375
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15484:1
position: 15484
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14375-15484:1:exon

HN018_RS28130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28130
old locus tag: HN018_28145
inference: COORDINATES: protein motif:HMM:NF037421.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALLDRIKDATKPTNTVEEVKQRQDQAPPPDLHRASPAGPSVAPQGEARKAASEAKAPAYAAEPEAIRRAYYVEEQGSQRRYYDDYKKTALAIRADDTAISSKREDLTTIRAILTLAESRGWQEVKVNGSAEFKREAWIEAAARGITAQGYKASDVDRQEADRRRAEQGPSVRPPPQAPEGNEVRQAASRATPAPSPASPTVLTPTPQAPAQQAPSTEKQAPGSPTPRPPVAERPEAGPKVEPNAAPAQQDPASPKVDHRKALREATAELSQDGRLVLAAVSGKIDREINRVGNEGKAELKAYFATELLKKERAEGPVVLSPELKRVAAAPEPAQQQKAAEPERQPERQVERQPERRIEPEEPRRTRRR
SIO_010081: HN018_RS28130
subclass of: SO_0000673
so part of: HN018_RS28130
location: 14375..15484
location: region:14375-15484:1
so has part: feature:14375-15484:1:exon

WP_171837874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14375-15484:1:exon

HN018_RS28135
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28135
old locus tag: HN018_28150
so part of: sequence
location: 15549..16583
location: region:15549-16583:1
so has part: feature:15549-16583:1:exon
subclass of: SO_0000010

position:15549:1
position: 15549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16583:1
position: 16583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15549-16583:1:exon

HN018_RS28135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28135
old locus tag: HN018_28150
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MKIRGSGSSRSPSLSSAAKARLRRIVNRTPEVVVKITGRSRGIVHLKQHLDYITRNGRLLGETQDGTKIATRADVRELHDDWLVANALTERGKPNPKAAQSVGVILSMRAGTPPDRLHEAARTWARESLPNNDWLMVRHEDKDHPHVHVTVRAVGYDGRRLVTGPADLQRWRETFARELRRHGIEAEATPRQARGAVRRSDRPALHRLTERGTEPNVVKRRTMEAVRDASPARSQKDPAWERAVQQRQQKIRDTYLAHASTLEGGDGADRRLALDLRAFAAGLPVPLSRRQTLAASLRPAQPQQEPRRDPLASPIGEPASYGPPGPSGEQVPAPGDQGRQHRRR
SIO_010081: HN018_RS28135
subclass of: SO_0000673
so part of: HN018_RS28135
location: 15549..16583
location: region:15549-16583:1
so has part: feature:15549-16583:1:exon

WP_171837875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15549-16583:1:exon

HN018_RS28140
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28140
old locus tag: HN018_28155
so part of: sequence
location: 16747..17031
location: region:16747-17031:1
so has part: feature:16747-17031:1:exon
subclass of: SO_0000010

position:16747:1
position: 16747
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17031:1
position: 17031
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16747-17031:1:exon

HN018_RS28140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28140
old locus tag: HN018_28155
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPAFPIVDRYRAELRAMPFPRMDDAGMVDLRRRGADAHQSSAIEGIHPTPELEALFTMLLEERVPPDVSDPYVHRYVMERIVAADRAQAMREAV
SIO_010081: HN018_RS28140
subclass of: SO_0000673
so part of: HN018_RS28140
location: 16747..17031
location: region:16747-17031:1
so has part: feature:16747-17031:1:exon

WP_171837876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16747-17031:1:exon

HN018_RS28145
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28145
old locus tag: HN018_28160
so part of: sequence
location: 17043..17933
location: region:17043-17933:1
so has part: feature:17043-17933:1:exon
subclass of: SO_0000010

position:17043:1
position: 17043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17933:1
position: 17933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17043-17933:1:exon

HN018_RS28145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28145
old locus tag: HN018_28160
inference: COORDINATES: protein motif:HMM:NF014691.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Fic family protein
translation: MARGPVDDPYVYPGTLTLKNKLGITDAGLLRAAEYAYTRQRTADAPPLPLTPDGFKATHKHLFGDVFPWAGQVRTVGITHPRHQEPFAFPHLIEGSLAKQFRELAANGNLVGLDAASFAEKAAHHVGELNAIHAFRDGNGRTMRLHLKQLAAGAGHDLDIARLPGKAWNDASGVSFRTADPRPLAAVIVQGLGSRERPEVEAAQAAATLSPDGLLVYAALAEKIDREMVKLTLGDKAEMRRFVADELVRREAREGPVVLTPEQRQLAAAPIAPTPAPGADVVKPELPSPPDRNRRR
SIO_010081: HN018_RS28145
subclass of: SO_0000673
so part of: HN018_RS28145
location: 17043..17933
location: region:17043-17933:1
so has part: feature:17043-17933:1:exon

WP_171837877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17043-17933:1:exon

HN018_RS28150
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28150
old locus tag: HN018_28165
so part of: sequence
location: 17961..18659
location: region:17961-18659:1
so has part: feature:17961-18659:1:exon
subclass of: SO_0000010

position:17961:1
position: 17961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18659:1
position: 18659
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17961-18659:1:exon

HN018_RS28150
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28150
old locus tag: HN018_28165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017182892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA adenine methylase
translation: MLLRMGYLGSKAASGAYQAIIALMPPHDTYVDLFAGSGAVLLRKPPAARSYAVDLDRAALDRVPDDFPGLVKHHGCAFRFIDDFNYARSGRTLIYADPPYLHATRTSSKRYRHELTDDDHRALLQRLMLSSASVIVSGYPSDLYDFMLSGWPSVSFQVMTRGGPRTERLWFNFPPGSTVQWASYAGRDFTHRQQIKRKAARWAAKYRELPPCERLAVLASLLEADAVPGDRA
SIO_010081: HN018_RS28150
subclass of: SO_0000673
so part of: HN018_RS28150
location: 17961..18659
location: region:17961-18659:1
so has part: feature:17961-18659:1:exon

WP_239479505.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17961-18659:1:exon

HN018_RS28155
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28155
old locus tag: HN018_28170
so part of: sequence
location: complement(19276..19830)
location: region:19276-19830:-1
so has part: feature:19276-19830:-1:exon
subclass of: SO_0000010

position:19276:-1
position: 19276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19830:-1
position: 19830
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19276-19830:-1:exon

HN018_RS28155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28155
old locus tag: HN018_28170
inference: COORDINATES: protein motif:HMM:NF022337.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2726 domain-containing protein
translation: MKVWLGIGVLVFLALAYVARSGRPGTAPRNMDALPLPAGTVHAKPLLSGWEKAAIDQLARQLPKTHRLCPQVRLLDMLSVRDGNRARWRTTCNRLGSKSVDFAVIDQAGRVTLVVELNDSSHDRPERRHRDKLVRAALDQAGIPLAVFRPGQPLDLAPWRGLDRETGSVAAYRPSKPYRSSLRA
SIO_010081: HN018_RS28155
subclass of: SO_0000673
so part of: HN018_RS28155
location: complement(19276..19830)
location: region:19276-19830:-1
so has part: feature:19276-19830:-1:exon

WP_171837878.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19276-19830:-1:exon

HN018_RS28160
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28160
old locus tag: HN018_28175
so part of: sequence
location: complement(19900..20739)
location: region:19900-20739:-1
so has part: feature:19900-20739:-1:exon
subclass of: SO_0000010

position:19900:-1
position: 19900
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20739:-1
position: 20739
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19900-20739:-1:exon

HN018_RS28160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28160
old locus tag: HN018_28175
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISPLANRFFTMAQDDPRPGWKETAALIAQAGRFVLAPEVVKLTLRTPEPDRLMPAVVQGLRLPHDPCWIEYSPHEVFAGRGDAASQFGILLWRDASGEVCNRLITRNRIGSLIRPGDVVPNPEEIAVVLYPCDLVFSPAGAFIRTTRPDLPQQDLAGYQEAAWHLGWMALSFALLLTARNAPLLVGEAEDLERLNRKRARSGKPPLMNARPVHWNLSREERHALRGQVPFDRNARSAAVSHMVRGHMKVRASGAFWWSPHFRNISDAEPIGGRDYVVR
SIO_010081: HN018_RS28160
subclass of: SO_0000673
so part of: HN018_RS28160
location: complement(19900..20739)
location: region:19900-20739:-1
so has part: feature:19900-20739:-1:exon

WP_171837879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19900-20739:-1:exon

HN018_RS28165
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
gene: mobC
locus tag: HN018_RS28165
old locus tag: HN018_28180
so part of: sequence
location: complement(20744..21415)
location: region:20744-21415:-1
so has part: feature:20744-21415:-1:exon
subclass of: SO_0000010

position:20744:-1
position: 20744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21415:-1
position: 21415
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20744-21415:-1:exon

HN018_RS28165
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
gene: mobC
locus tag: HN018_RS28165
old locus tag: HN018_28180
inference: COORDINATES: protein motif:HMM:NF017524.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MGGRNGQELLSVWVPGDLAARFKAWARGTEGGASAALRRLILQAVDGVEPSLPLGATARQIGVRLKDAERVALLRAAQARRTTPANWLRSLAIVHLGRRPQWNDPEAAELREIGMEVRRVGNNLNQLARAMNVAVLAGEYPPGQGDAAREGAELLRVELRRLMAIYTGNFDYWGLPDAQRPTAQPGMKARELARQNEAKEKQRLRPRRRPARFADDGPAADNG
SIO_010081: HN018_RS28165
subclass of: SO_0000673
so part of: HN018_RS28165
location: complement(20744..21415)
location: region:20744-21415:-1
so has part: feature:20744-21415:-1:exon

WP_171837880.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20744-21415:-1:exon

HN018_RS28170
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28170
old locus tag: HN018_28185
so part of: sequence
location: complement(21654..22232)
location: region:21654-22232:-1
so has part: feature:21654-22232:-1:exon
subclass of: SO_0000010

position:21654:-1
position: 21654
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22232:-1
position: 22232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21654-22232:-1:exon

HN018_RS28170
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28170
old locus tag: HN018_28185
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018276047.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKLGYLRVSKGDSQTPELQRQGLDRAGVERFFEDRAGGGRWDRPGLQKMLDQLRTGDVVMVWKLDRLSRSLPDMLRIVSRIKEAGAGFSSLTESIDTTTPAGEMFFHVCTIFADYERKLIVERTKAGLDAARAEGRVGGRRPKLNPQQRRKIAEDVVSGRSTAAEAARLWKVSPPTITRIVAEHPGLREHGA
SIO_010081: HN018_RS28170
subclass of: SO_0000673
so part of: HN018_RS28170
location: complement(21654..22232)
location: region:21654-22232:-1
so has part: feature:21654-22232:-1:exon

WP_171837881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21654-22232:-1:exon

HN018_RS28175
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28175
old locus tag: HN018_28190
so part of: sequence
location: complement(22554..22859)
location: region:22554-22859:-1
so has part: feature:22554-22859:-1:exon
subclass of: SO_0000010

position:22554:-1
position: 22554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22859:-1
position: 22859
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22554-22859:-1:exon

HN018_RS28175
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28175
old locus tag: HN018_28190
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011993085.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSATQLPDTGLAAAIRRLLDLARGNTHQCRYAANFLLAWWNAGDCGGWDLTDLWAVDDTIAHDMLAVAAFIAANHEYPTSYGLGAEFEALVVQWRPHLLAS
SIO_010081: HN018_RS28175
subclass of: SO_0000673
so part of: HN018_RS28175
location: complement(22554..22859)
location: region:22554-22859:-1
so has part: feature:22554-22859:-1:exon

WP_171837882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22554-22859:-1:exon

HN018_RS28180
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28180
old locus tag: HN018_28195
so part of: sequence
location: complement(23583..24518)
location: region:23583-24518:-1
so has part: feature:23583-24518:-1:exon
subclass of: SO_0000010

position:23583:-1
position: 23583
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24518:-1
position: 24518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23583-24518:-1:exon

HN018_RS28180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28180
old locus tag: HN018_28195
inference: COORDINATES: protein motif:HMM:NF024554.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3991 and TOPRIM domain-containing protein
translation: MTTDQDELAELRQRVDCRTVLERGGWAMDAAESSRRAVKYRQGSGRIVIVTHEGKGWFDPLNDRRGDVIALAQHVWGGTLGHARKNLRPLAGIAPKLLPLRQGAAVVAIDGERLWNEARHLQPGSQAWDYLTEQRGLPAATVDRAAKVGALREGVHGTMWAQHQAASGRITGWEMRGPYYKGFAKGGTKSLFWLGHPPVADRLVVTESAIDAMSLGSIERWREGTLYASTGGGFGSETEAALRGFLPRHAQLVAATDQGTGGEVLAARLHDLATSCGSDFVRLVPEAKDWNAQLCPDPRGFIPSSNDGPRP
SIO_010081: HN018_RS28180
subclass of: SO_0000673
so part of: HN018_RS28180
location: complement(23583..24518)
location: region:23583-24518:-1
so has part: feature:23583-24518:-1:exon

WP_171837883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23583-24518:-1:exon

HN018_RS28185
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28185
old locus tag: HN018_28200
so part of: sequence
location: complement(24515..24823)
location: region:24515-24823:-1
so has part: feature:24515-24823:-1:exon
subclass of: SO_0000010

position:24515:-1
position: 24515
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24823:-1
position: 24823
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24515-24823:-1:exon

HN018_RS28185
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28185
old locus tag: HN018_28200
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASVGGRAAYGVAVVLSAAVRVPVVVVLRLLRPFIMFPLLLAMIGGLGAAIVFAWGHHWLDAGRAGLVVFVCALLLAVYSRAAVWIDPEHFDDRNGPSWRRL
SIO_010081: HN018_RS28185
subclass of: SO_0000673
so part of: HN018_RS28185
location: complement(24515..24823)
location: region:24515-24823:-1
so has part: feature:24515-24823:-1:exon

WP_171837884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24515-24823:-1:exon

HN018_RS28190
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28190
old locus tag: HN018_28205
so part of: sequence
location: complement(24888..25964)
location: region:24888-25964:-1
so has part: feature:24888-25964:-1:exon
subclass of: SO_0000010

position:24888:-1
position: 24888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25964:-1
position: 25964
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24888-25964:-1:exon

HN018_RS28190
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28190
old locus tag: HN018_28205
inference: COORDINATES: protein motif:HMM:TIGR00180.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB/RepB/Spo0J family partition protein
translation: MGKAPAVKQSFGAGVLSGLRQQAGTTKGGEPLHLPLDQIAEDPDQPRKVFSETELEQMAETIRLVGVLSPVGVRKREEGGYALVFGARRLRGSRLAGVTTIPAVLVPKDQATLAVQVIENQARTGLSNSDLAAVVNRLFADKMTVKQIAVVCNIKEYQVAAFRSAEKLPACLRDRLDSADMRALYDLSRAWEKHPAEVEEELPDEGTYITITDARRIIEAITGKVTGSVILRREDQVKAAPEPTRQELPLTVTPPVQPVREDEPATPVAPAARRERAPAQPVPSPPAPATRSPDKAPAAQEQTTQPPGFPEFVMELTDGRRGLLITERRAGRKGMALLDVDGEEVAAKFSDLRPVDVD
SIO_010081: HN018_RS28190
subclass of: SO_0000673
so part of: HN018_RS28190
location: complement(24888..25964)
location: region:24888-25964:-1
so has part: feature:24888-25964:-1:exon

WP_171837885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24888-25964:-1:exon

HN018_RS28195
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28195
old locus tag: HN018_28210
so part of: sequence
location: complement(25957..26703)
location: region:25957-26703:-1
so has part: feature:25957-26703:-1:exon
subclass of: SO_0000010

position:25957:-1
position: 25957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26703:-1
position: 26703
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25957-26703:-1:exon

HN018_RS28195
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28195
old locus tag: HN018_28210
inference: COORDINATES: protein motif:HMM:NF013793.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MKTLVVLNEKGGVGKTTLSLHGAWFFAERYRTLVLDLDQQANLSYTLEANLSGVDAVSLFNEPTKIPRAGHFTVAGATAELFDAERAEQTAIETFRQSIAANADDYDFCIIDTPPLLGLRTFAALLSADAVLAPIELGDYSITGVQRLLQAIKGVSQHYGRDEPTFLGLLASKFDRRSPRERTLFEGLAEEIGGLLFPGVVGKRDVFARAASERIPVWQMKGQSARDASEEIRGVFANVERMMELSHG
SIO_010081: HN018_RS28195
subclass of: SO_0000673
so part of: HN018_RS28195
location: complement(25957..26703)
location: region:25957-26703:-1
so has part: feature:25957-26703:-1:exon

WP_171837886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25957-26703:-1:exon

HN018_RS28200
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28200
old locus tag: HN018_28215
so part of: sequence
location: 27633..27812
location: region:27633-27812:1
so has part: feature:27633-27812:1:exon
subclass of: SO_0000010

position:27633:1
position: 27633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27812:1
position: 27812
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27633-27812:1:exon

HN018_RS28200
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28200
old locus tag: HN018_28215
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPLDLAIEHASTSLLGMVILGLIAWGTWRLGYARMFTFPVGQIVMGLAVVDAVGLAFWS
SIO_010081: HN018_RS28200
subclass of: SO_0000673
so part of: HN018_RS28200
location: 27633..27812
location: region:27633-27812:1
so has part: feature:27633-27812:1:exon

WP_171837887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27633-27812:1:exon

HN018_RS28205
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28205
old locus tag: HN018_28220
so part of: sequence
location: complement(27869..28189)
location: region:27869-28189:-1
so has part: feature:27869-28189:-1:exon
subclass of: SO_0000010

position:27869:-1
position: 27869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28189:-1
position: 28189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27869-28189:-1:exon

HN018_RS28205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28205
old locus tag: HN018_28220
inference: COORDINATES: protein motif:HMM:NF027824.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrfB-related DNA-binding protein
translation: MAKTTMTQDDFDALRPSLGRMTVDTMDVARLVLVAGVSQADAAGRYGMSRQRVYGIMKRFEAASQGWPTDWRKVEVWLPPKLAAEVEGMAEAAIAEHRGSQASPKR
SIO_010081: HN018_RS28205
subclass of: SO_0000673
so part of: HN018_RS28205
location: complement(27869..28189)
location: region:27869-28189:-1
so has part: feature:27869-28189:-1:exon

WP_171837888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27869-28189:-1:exon

HN018_RS28210
type: Gene
subclass of: SO_0000704
RO_0002162: 1484109
locus tag: HN018_RS28210
old locus tag: HN018_28225
so part of: sequence
location: complement(28249..29163)
location: region:28249-29163:-1
so has part: feature:28249-29163:-1:exon
subclass of: SO_0000010

position:28249:-1
position: 28249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29163:-1
position: 29163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28249-29163:-1:exon

HN018_RS28210
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1484109
locus tag: HN018_RS28210
old locus tag: HN018_28225
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011509168.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MSIEARRDIYQAITDKVIADLERGVRPWHHPWAGGKATSGRPLRANGIPYQGINVVLLWIEASLKGYRSTTWMTFKQALAAGGCVRKGEKGSMVVYADAITKTETDAATGDETGRRIPFLKSYTVFNVGQIDGLPAAPAVIEPTDRLTEADRIEAAEAFFRAVGARIEHGGTRAFYRPAVDGITMPPFAAFESPARYYSTLGHEHVHWTGHGTRLDRLDEVFRKKEGYAREELTAELGSAFLCADLGLEDQPREDHADYVAIWLKVLREDKRAVITAAGAASRALAFLHDRAGILAQADDIEAA
SIO_010081: HN018_RS28210
subclass of: SO_0000673
so part of: HN018_RS28210
location: complement(28249..29163)
location: region:28249-29163:-1
so has part: feature:28249-29163:-1:exon

WP_171837889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28249-29163:-1:exon