Lichenicola cladoniae strain PAMC 26569 plasmid unnamed6, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Lichenicola.
Biodiversity and physiological characteristics of Antarctic and Arctic lichens-associated bacteria
Submitted (19-MAY-2020) Division of Polar Life Sciences, Korea Polar Research institute, 26 Songdomirae-ro, Incheon 21990, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP053713.1.\nBacteria and source DNA available from PAMC, Korea Polar Research\nInstitute.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler assembler v. v0.4.8\nAssembly Name :: KOPRI_Lcla_1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 516.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 06:14:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,687\nCDSs (total) :: 5,624\nGenes (coding) :: 5,398\nCDSs (with protein) :: 5,398\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 4\nPseudo Genes (total) :: 226\nCDSs (without protein) :: 226\nPseudo Genes (ambiguous residues) :: 0 of 226\nPseudo Genes (frameshifted) :: 81 of 226\nPseudo Genes (incomplete) :: 148 of 226\nPseudo Genes (internal stop) :: 71 of 226\nPseudo Genes (multiple problems) :: 63 of 226\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Lichenicola cladoniae Noh et al. 2020
COORDINATES: similar to AA sequence:RefSeq:WP_016558605.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012972817.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011788482.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018067884.1
COORDINATES: similar to AA sequence:RefSeq:WP_020487022.1
COORDINATES: similar to AA sequence:RefSeq:WP_003525964.1
COORDINATES: similar to AA sequence:RefSeq:WP_004820551.1
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006956108.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00879.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0051119 - sugar transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: protein motif:HMM:NF025107.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813232.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014021.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF014043.2
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_012286797.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007607994.1
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004107652.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_020818031.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630660.1
COORDINATES: protein motif:HMM:NF010464.0
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_014777351.1
COORDINATES: similar to AA sequence:RefSeq:WP_009210693.1
COORDINATES: protein motif:HMM:NF013776.2
COORDINATES: similar to AA sequence:RefSeq:WP_014239542.1
COORDINATES: similar to AA sequence:RefSeq:WP_019692619.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012029843.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
thiamine pyrophosphate-requiring protein
COORDINATES: similar to AA sequence:RefSeq:WP_008973026.1
COORDINATES: similar to AA sequence:RefSeq:WP_006611564.1
COORDINATES: similar to AA sequence:RefSeq:WP_008973024.1
gluconate 2-dehydrogenase subunit 3 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020070492.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611376.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013634994.1
COORDINATES: protein motif:HMM:NF024908.2