Bacillus smithii strain DSM 4216 plasmid pDSM4216, complete sequence.
type: Entry
definition: Bacillus smithii strain DSM 4216 plasmid pDSM4216, complete sequence.
sequence version: NZ_CP012025.1
sequence date: 2023-04-27
sequence: sequence
division: CON
label: NZ_CP012025.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN03246763
keyword: RefSeq
source: Bacillus smithii
organism: Bacillus smithii
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP012025.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLCbio Genomics Workbench v. 5.0; SSPACE\n Premium v. 2.0; GapFiller v. 1.10\nGenome Coverage :: paired-end reads 187x; mate pair reads\n 311x; PacBio 56x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/27/2023 01:56:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,167\nCDSs (total) :: 3,035\nGenes (coding) :: 2,963\nCDSs (with protein) :: 2,963\nGenes (RNA) :: 132\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 95\nncRNAs :: 4\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 31 of 72\nPseudo Genes (incomplete) :: 45 of 72\nPseudo Genes (internal stop) :: 16 of 72\nPseudo Genes (multiple problems) :: 16 of 72\nCRISPR Arrays :: 6\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 12514
topology: circular
so has quality: SO_0000988
location: 1..12514
location: region:1-12514:1
RO_0002162: 1479

NZ_CP012025
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN03246763
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216T
author: Bosma, E.F.
author: Koehorst, J.J.
author: van Hijum, S.A.F.T.
author: Renckens, B.
author: Vriesendorp, B.
author: van de Weijer, A.H.P.
author: Schaap, P.J.
author: de Vos, W.M.
author: van der Oost, J.
author: van Kranenburg, R.
journal: Unpublished

2
title: Direct Submission
author: Bosma, E.F.
author: Koehorst, J.J.
author: van Hijum, S.A.F.T.
author: Renckens, B.
author: Vriesendorp, B.
author: van de Weijer, A.H.P.
author: Schaap, P.J.
author: de Vos, W.M.
author: van der Oost, J.
author: van Kranenburg, R.
journal: Submitted (02-JUL-2015) Corporate Research and Development, Corbion, Arkelsedijk 46, Gorinchem 4206 AC, The Netherlands

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12514:1
position: 12514
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12514:1:source
so part of: sequence
organism: Bacillus smithii
mol type: genomic DNA
strain: DSM 4216
isolation source: cheese
culture collection: DSM:4216
type material: type strain of Bacillus smithii
plasmid: pDSM4216
country: USA

1479
type: Taxonomy
SIO_000068: taxonomy

BSM4216_RS15805
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15805
old locus tag: BSM4216_3864
so part of: sequence
location: complement(1215..1775)
location: region:1215-1775:-1
so has part: feature:1215-1775:-1:exon
subclass of: SO_0000010

position:1215:-1
position: 1215
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1775:-1
position: 1775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1215-1775:-1:exon

BSM4216_RS15805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15805
old locus tag: BSM4216_3864
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013860643.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIQTIVSIINTGVIILNVMFPTLFKRVGQTVTNQEANTKLSQKEIQKLIELEIELQKHGISAEDIQYGIQSNLPQQAQQDSGITTLGVKSTAAKVAAKSMISKLQKIGRVSWDRTVRNYIAKLPISSSAKSTLKKYLAYQFVMSTLNVVIDFSGTIEDAIEKRLKSIGVSSWLAGITARAIVFLLF
SIO_010081: BSM4216_RS15805
subclass of: SO_0000673
so part of: BSM4216_RS15805
location: complement(1215..1775)
location: region:1215-1775:-1
so has part: feature:1215-1775:-1:exon

WP_053083274.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1215-1775:-1:exon

BSM4216_RS15810
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15810
old locus tag: BSM4216_3865
so part of: sequence
location: 2452..2709
location: region:2452-2709:1
so has part: feature:2452-2709:1:exon
subclass of: SO_0000010

position:2452:1
position: 2452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2709:1
position: 2709
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2452-2709:1:exon

BSM4216_RS15810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15810
old locus tag: BSM4216_3865
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKLDKNIKQNKFLKKYQNFNMGIVYALIIVICGVLKVSTSIPLILLSLVVIVDLIVSIITKKKKDTIIDVFAIILLWLGAIFLR
SIO_010081: BSM4216_RS15810
subclass of: SO_0000673
so part of: BSM4216_RS15810
location: 2452..2709
location: region:2452-2709:1
so has part: feature:2452-2709:1:exon

WP_048624567.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2452-2709:1:exon

BSM4216_RS15815
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15815
old locus tag: BSM4216_3867
so part of: sequence
location: 3199..4071
location: region:3199-4071:1
so has part: feature:3199-4071:1:exon
subclass of: SO_0000010

position:3199:1
position: 3199
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4071:1
position: 4071
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3199-4071:1:exon

BSM4216_RS15815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15815
old locus tag: BSM4216_3867
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011272607.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MANQLKDTLRVFVVPTEILDMEELTTHEKMVYIVLRSYANSQDDTAFPSYDTIAKKASMHRRTAIKCVEKLVKLGLLVKEERKKVNKNGKISPTSNLYTIRRPAEIKNEVVNPSESNTPPLVNDMHYPSEPDSLPLVNEIHHPSESDSPEQKNIKITNDKRLKENYRERDLLKGAEIEEELKDYIEERLEEFEEKGIDLQMVINWIEANTEFYSFSEFAVGINQLLEFPEPIKNPIRFLNSTFADIEKYVKDFRKKQLKKGKKEMAAKKKQQQPHFQPQPQAVFYNWLEQ
SIO_010081: BSM4216_RS15815
subclass of: SO_0000673
so part of: BSM4216_RS15815
location: 3199..4071
location: region:3199-4071:1
so has part: feature:3199-4071:1:exon

WP_048624568.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3199-4071:1:exon

BSM4216_RS15820
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15820
old locus tag: BSM4216_3868
so part of: sequence
location: 4086..4526
location: region:4086-4526:1
so has part: feature:4086-4526:1:exon
subclass of: SO_0000010

position:4086:1
position: 4086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4526:1
position: 4526
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4086-4526:1:exon

BSM4216_RS15820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15820
old locus tag: BSM4216_3868
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHMYEVDWEKLLEEKNTEGILAGVMAETVESMFFYLDWSTRHLKQLQKQNPATEEHHSEALFMFGIMNVSCKLLYIDPYEWCKATKIPYRGRNKTYWHLFNNKKPYDIFGKPMQKPGFYYELIGQMMGTKNEIELEQLKKELNDSN
SIO_010081: BSM4216_RS15820
subclass of: SO_0000673
so part of: BSM4216_RS15820
location: 4086..4526
location: region:4086-4526:1
so has part: feature:4086-4526:1:exon

WP_048624569.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4086-4526:1:exon

BSM4216_RS15825
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15825
old locus tag: BSM4216_3869
so part of: sequence
location: 4682..5230
location: region:4682-5230:1
so has part: feature:4682-5230:1:exon
subclass of: SO_0000010

position:4682:1
position: 4682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5230:1
position: 5230
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4682-5230:1:exon

BSM4216_RS15825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15825
old locus tag: BSM4216_3869
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003352734.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MerR family transcriptional regulator
translation: MSEYLTIAELAEQAGIPNSTCRRYLANFELFFVVKGGSRLKKYEAEAVNILKRIKQLYDEGKDTNEIRNILANEFPLVINHDEQRETSEKVTNTPTLATSEDVEEIKKALEEQKKFNEMLLKKLDEQSRYIKESLEKRDRQLMESLTQSLEIRQARIEAAITEKETQKSFFSRLFSKKGKEK
SIO_010081: BSM4216_RS15825
subclass of: SO_0000673
so part of: BSM4216_RS15825
location: 4682..5230
location: region:4682-5230:1
so has part: feature:4682-5230:1:exon

WP_048624570.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4682-5230:1:exon

BSM4216_RS16925
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS16925
old locus tag: BSM4216_3870
so part of: sequence
location: 5422..5598
location: region:5422-5598:1
so has part: feature:5422-5598:1:exon
subclass of: SO_0000010

position:5422:1
position: 5422
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5598:1
position: 5598
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5422-5598:1:exon

BSM4216_RS16925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS16925
old locus tag: BSM4216_3870
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014097066.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antitoxin VbhA family protein
translation: MKYSKETLQKKFSSVKASLEIEGLKVTKEIEDLVIAKAAGEISFDQFKREAARLAGKQ
SIO_010081: BSM4216_RS16925
subclass of: SO_0000673
so part of: BSM4216_RS16925
location: 5422..5598
location: region:5422-5598:1
so has part: feature:5422-5598:1:exon

WP_169799179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5422-5598:1:exon

BSM4216_RS15830
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15830
old locus tag: BSM4216_3871
so part of: sequence
location: complement(6202..6723)
location: region:6202-6723:-1
so has part: feature:6202-6723:-1:exon
subclass of: SO_0000010

position:6202:-1
position: 6202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6723:-1
position: 6723
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6202-6723:-1:exon

BSM4216_RS15830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15830
old locus tag: BSM4216_3871
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013860497.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MKWALKRHCLPRDYILFVLGCETGLRVGDLLKIKTEAILRLKNKKEKVLRVKEGKTQKIRDIYIGHCFEEVYEYAAGLDSEWLFPSRKGNRPITPTQAYRQLKKAADFAGVEHVGNHTLRKTFGYWFYKATKDIAMLQEILNHSHPSVTLRYIGITEEETQNVLKHFSVFQDK
SIO_010081: BSM4216_RS15830
subclass of: SO_0000673
so part of: BSM4216_RS15830
location: complement(6202..6723)
location: region:6202-6723:-1
so has part: feature:6202-6723:-1:exon

WP_048624571.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6202-6723:-1:exon

BSM4216_RS15840
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15840
old locus tag: BSM4216_3873
so part of: sequence
location: 7454..7693
location: region:7454-7693:1
so has part: feature:7454-7693:1:exon
subclass of: SO_0000010

position:7454:1
position: 7454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7693:1
position: 7693
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7454-7693:1:exon

BSM4216_RS15840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15840
old locus tag: BSM4216_3873
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013401917.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MATTVQKWGNSLAVRIPKDVAERVAIHQGSEIELRVIDDKKITLVPKQKKYTLEELLKQAKPENRHKEIDFGIEGNELI
SIO_010081: BSM4216_RS15840
subclass of: SO_0000673
so part of: BSM4216_RS15840
location: 7454..7693
location: region:7454-7693:1
so has part: feature:7454-7693:1:exon

WP_081473003.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7454-7693:1:exon

BSM4216_RS15845
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15845
old locus tag: BSM4216_3874
so part of: sequence
location: 7690..8019
location: region:7690-8019:1
so has part: feature:7690-8019:1:exon
subclass of: SO_0000010

position:7690:1
position: 7690
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8019:1
position: 8019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7690-8019:1:exon

BSM4216_RS15845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15845
old locus tag: BSM4216_3874
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013173554.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system PemK/MazF family toxin
translation: MTQAPDRGDLVYLNFNPQSGHEQAGRRPGIVLSPKEFNEITRFALICPITNTVKGWPFEVELPEGLAIQGAILTDQVKSLDWVSRKIQIKDQAPPEIVTECLNKIHTFL
SIO_010081: BSM4216_RS15845
subclass of: SO_0000673
so part of: BSM4216_RS15845
location: 7690..8019
location: region:7690-8019:1
so has part: feature:7690-8019:1:exon

WP_003352727.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7690-8019:1:exon

BSM4216_RS15850
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15850
old locus tag: BSM4216_3875
so part of: sequence
location: complement(8201..8614)
location: region:8201-8614:-1
so has part: feature:8201-8614:-1:exon
subclass of: SO_0000010

position:8201:-1
position: 8201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8614:-1
position: 8614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8201-8614:-1:exon

BSM4216_RS15850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15850
old locus tag: BSM4216_3875
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITNKDYFAQLPKEIKQGFSELNIGYHLRKANITKLSGYSCLTVFKLIFLLVFQYKNWFRAFMSKRSQDLPGKDTVYRFLNTPTYHWRKFLLSLSSEMIRLLQPSLFVHLGYQLGIQSCCFLVPRCFIDGIRHHAIL
SIO_010081: BSM4216_RS15850
subclass of: SO_0000673
so part of: BSM4216_RS15850
location: complement(8201..8614)
location: region:8201-8614:-1
so has part: feature:8201-8614:-1:exon

WP_048624573.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8201-8614:-1:exon

BSM4216_RS15855
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15855
old locus tag: BSM4216_3876
so part of: sequence
location: complement(8746..9081)
location: region:8746-9081:-1
so has part: feature:8746-9081:-1:exon
subclass of: SO_0000010

position:8746:-1
position: 8746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9081:-1
position: 9081
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8746-9081:-1:exon

BSM4216_RS15855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15855
old locus tag: BSM4216_3876
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHMYEVDWEKLLEEKNTEGILAGVMAETVESMFFYLDWSTRHLKQLQKQNPATEEHHSEALFMFGIMNVSCKLLYIDPYEWCKATKIPYRGRNKTYWHLFNNSAFAVQNLV
SIO_010081: BSM4216_RS15855
subclass of: SO_0000673
so part of: BSM4216_RS15855
location: complement(8746..9081)
location: region:8746-9081:-1
so has part: feature:8746-9081:-1:exon

WP_048624574.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8746-9081:-1:exon

BSM4216_RS15860
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15860
old locus tag: BSM4216_3877
so part of: sequence
location: complement(9096..10004)
location: region:9096-10004:-1
so has part: feature:9096-10004:-1:exon
subclass of: SO_0000010

position:9096:-1
position: 9096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10004:-1
position: 10004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9096-10004:-1:exon

BSM4216_RS15860
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15860
old locus tag: BSM4216_3877
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDVIIDLLRSDGSIVVNKRLAKAIGLTEAVVYSELVSLYKYWANRGELTDGEWFFCTDDNLVENTTIPKNTVRRKVNELVKMGLIEKELKGLPAKIHYRITDKIFEVLGLWSSKDNQNGQPDEINVYDEKRAEKSHGYQLTQNGQPRVTKMDKQGSPKWSPNNTKLNNTKINNTNKIRERDLIKGAEIEEELKDYIEGRSEEFKEKGIDLQTVINWIEANKEFYSFSEFAVGINQLLEFPEPIKNPILFLNSTFAEIEKYVKDFRKKQLKKGKKEMAAKKKQQQPHFQPQPQAVFYNWLEQ
SIO_010081: BSM4216_RS15860
subclass of: SO_0000673
so part of: BSM4216_RS15860
location: complement(9096..10004)
location: region:9096-10004:-1
so has part: feature:9096-10004:-1:exon

WP_048624575.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9096-10004:-1:exon

BSM4216_RS15865
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15865
old locus tag: BSM4216_3878
so part of: sequence
location: 10157..10477
location: region:10157-10477:1
so has part: feature:10157-10477:1:exon
subclass of: SO_0000010

position:10157:1
position: 10157
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10477:1
position: 10477
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10157-10477:1:exon

BSM4216_RS15865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15865
old locus tag: BSM4216_3878
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003395735.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPKNPELRKVWEQRIADYRKSGQTQVNWCKENQWSIHQFKYWLRKIENPIKNQGKSTKWASVTLEDHSQTVENSLRIEISGISIEVKPGFDPAFLSEVVRTLKSTC
SIO_010081: BSM4216_RS15865
subclass of: SO_0000673
so part of: BSM4216_RS15865
location: 10157..10477
location: region:10157-10477:1
so has part: feature:10157-10477:1:exon

WP_003352856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10157-10477:1:exon

BSM4216_RS15870
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
gene: tnpB
locus tag: BSM4216_RS15870
old locus tag: BSM4216_3879
so part of: sequence
location: 10471..10827
location: region:10471-10827:1
so has part: feature:10471-10827:1:exon
subclass of: SO_0000010

position:10471:1
position: 10471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10827:1
position: 10827
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10471-10827:1:exon

BSM4216_RS15870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
gene: tnpB
locus tag: BSM4216_RS15870
old locus tag: BSM4216_3879
inference: COORDINATES: protein motif:HMM:NF017528.2
note: TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family insertion sequence element accessory protein TnpB
translation: MLVGTRAERVYLAKGSTDLRKSIDGLAALVKEGFDLDPFSSSYFVFCNRKRDKLKILHWDYNGFWLYYRRLEKGKFQWPNENDTGTIQISYRQLRWLLDGLAMEQKKAHPEVKARTVI
SIO_010081: BSM4216_RS15870
subclass of: SO_0000673
so part of: BSM4216_RS15870
location: 10471..10827
location: region:10471-10827:1
so has part: feature:10471-10827:1:exon

WP_003352857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10471-10827:1:exon

BSM4216_RS15875
type: Gene
subclass of: SO_0000704
RO_0002162: 1479
locus tag: BSM4216_RS15875
old locus tag: BSM4216_3880
so part of: sequence
location: 10889..12466
location: region:10889-12466:1
so has part: feature:10889-12466:1:exon
subclass of: SO_0000010

position:10889:1
position: 10889
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12466:1
position: 12466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10889-12466:1:exon

BSM4216_RS15875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1479
locus tag: BSM4216_RS15875
old locus tag: BSM4216_3880
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003353475.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS66 family transposase
translation: MMKNLKNPTQNPFELIEKLQQQIVELTAKLRWYEEQYRLSQKRKFGSSSEKTNPNQLELPLFNEAEVESNVKAEEPTVETITYRRKKKRGQRQATFENLPMETIEYRLPEEEQVCSCCGEKTHEMSTEVRQELVIIPAQVKVLKHVRYVYGCRHCERNEIETPIVTAPAPKSVYPKSLASPSSMAYIMNQKYVEGLPLYRQEQQFKRLGVILSRQTMANWMLYGAEKWLAPIYQRMKEHLLSKDILHADETTVQVLHEPGRSSTSKSYMWLYRTGREDPPLVLYDYQETRAGEHAKEFLKGFKGYLHVDGYAGYHKVSGVTLVGCWAHARRKFDEALNVLPESKRHSAVTVREGLNFCNQLFAIERDLKECTPEERYKKRLKHSQPLLEAFSAWLKTEKSNVLPKSLLGQAITYCLNQWEKLVAFLEDGRLEIDNNRSERSIKPFVIGRKNWIFSNTPKGAKASSIIYSIVETAKENKLNPFYYLRYLFERLPNMDISNMDELDQLLPWSKTIPLNCRVFNNLSQ
SIO_010081: BSM4216_RS15875
subclass of: SO_0000673
so part of: BSM4216_RS15875
location: 10889..12466
location: region:10889-12466:1
so has part: feature:10889-12466:1:exon

WP_048623352.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10889-12466:1:exon