Paracoccus yeei strain TT13 plasmid pTT13-6, complete sequence.
type: Entry
definition: Paracoccus yeei strain TT13 plasmid pTT13-6, complete sequence.
sequence version: NZ_CP024428.1
sequence date: 2023-03-10
sequence: sequence
division: CON
label: NZ_CP024428.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN07501686
keyword: RefSeq
source: Paracoccus yeei
organism: Paracoccus yeei
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP024428.1.\nBacteria and source DNA available from Prof Kyoung Lee, Changwon\nNational University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRTpipe HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 178.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/09/2023 03:30:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,573\nCDSs (total) :: 4,510\nGenes (coding) :: 4,349\nCDSs (with protein) :: 4,349\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 161\nCDSs (without protein) :: 161\nPseudo Genes (ambiguous residues) :: 0 of 161\nPseudo Genes (frameshifted) :: 58 of 161\nPseudo Genes (incomplete) :: 136 of 161\nPseudo Genes (internal stop) :: 18 of 161\nPseudo Genes (multiple problems) :: 46 of 161\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 24567
topology: circular
so has quality: SO_0000988
location: 1..24567
location: region:1-24567:1
RO_0002162: 147645

NZ_CP024428
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN07501686
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Paracoccus yeei TT13 isolated from human skin
author: Lee, K.
author: Lim, J.Y.
author: Hwang, I.
journal: Unpublished

2
title: Direct Submission
author: Lee, K.
author: Lim, J.Y.
author: Hwang, I.
journal: Submitted (27-OCT-2017) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, Korea, Republic of

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24567:1
position: 24567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-24567:1:source
so part of: sequence
organism: Paracoccus yeei
mol type: genomic DNA
strain: TT13
isolation source: skin swab
host: Homo sapiens
culture collection: KCTC:52861
plasmid: pTT13-6
country: South Korea: Changwon
collection date: 2016-09-23

147645
type: Taxonomy
SIO_000068: taxonomy

PYTT13_RS22500
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22500
old locus tag: PYTT13_22415
so part of: sequence
location: 101..943
location: region:101-943:1
so has part: feature:101-943:1:exon
subclass of: SO_0000010

position:101:1
position: 101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:943:1
position: 943
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:101-943:1:exon

PYTT13_RS22500
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22500
old locus tag: PYTT13_22415
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSDENRPKANSKRTLEVVPNLGEMVKPSELIEVKGAAKLSLADRRLYNVLLHNAFGPDLGTENRRFEIPLSELRDTHDSNDRLVQSIEALMTTVVTMRRADGSTDRVQLLGWNNLSDSKRKHGFLKYSIPPELAVLLRDSMVFAKLEMEVLRAFTSKYALALYEAVARRVRLQHIYSEKFGLDDFRELLGVEHDKLTTFGNLNQYAIKPALLEVNALSDFLVSVEPVKQGRRVVAVVIGWSVKDIEGRKAAYAELQRSRVGRRPRLAGTVETIDDEALLA
SIO_010081: PYTT13_RS22500
subclass of: SO_0000673
so part of: PYTT13_RS22500
location: 101..943
location: region:101-943:1
so has part: feature:101-943:1:exon

WP_157767487.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:101-943:1:exon

PYTT13_RS22505
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22505
old locus tag: PYTT13_22420
so part of: sequence
location: 1058..1651
location: region:1058-1651:1
so has part: feature:1058-1651:1:exon
subclass of: SO_0000010

position:1058:1
position: 1058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1651:1
position: 1651
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1058-1651:1:exon

PYTT13_RS22505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22505
old locus tag: PYTT13_22420
inference: COORDINATES: protein motif:HMM:NF018691.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MAAQKGGAGKTTLSRNLAVAAAADGQNVLCVDLDPQGSLRGWWQARQNENPGMLEADPKPEALQKTLQAAAKVFDLAIIDTPPAAPVWLSDAIGTADLVLIPVRPSPDDLRAVGATIAAVTDAKVPFAFVLSQAPRAKITEEAVRVLAQHGRVAPVNIVQRVIYAETGASGAGVIETTDTKAAEEIRGIWTYVKGIL
SIO_010081: PYTT13_RS22505
subclass of: SO_0000673
so part of: PYTT13_RS22505
location: 1058..1651
location: region:1058-1651:1
so has part: feature:1058-1651:1:exon

WP_269780437.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1058-1651:1:exon

PYTT13_RS22510
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22510
old locus tag: PYTT13_22425
so part of: sequence
location: 1651..1911
location: region:1651-1911:1
so has part: feature:1651-1911:1:exon
subclass of: SO_0000010

position:1911:1
position: 1911
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1651-1911:1:exon

PYTT13_RS22510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22510
old locus tag: PYTT13_22425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017930026.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family transcriptional regulator
translation: MAKKAVSLEGLLDTTAKPTETGIPQRGAGQMPTPPKPVKREGEKRLTLALDGATYRRLRLHAVEVDQTHQDILERALTEYLDRANA
SIO_010081: PYTT13_RS22510
subclass of: SO_0000673
so part of: PYTT13_RS22510
location: 1651..1911
location: region:1651-1911:1
so has part: feature:1651-1911:1:exon

WP_099650856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1651-1911:1:exon

PYTT13_RS23815
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS23815
so part of: sequence
location: complement(1960..2094)
location: region:1960-2094:-1
so has part: feature:1960-2094:-1:exon
subclass of: SO_0000010

position:1960:-1
position: 1960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2094:-1
position: 2094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1960-2094:-1:exon

PYTT13_RS23815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS23815
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTISKELLDELLKGVERPPCRRRKGKGGRLLRRRQQLHAAASVA
SIO_010081: PYTT13_RS23815
subclass of: SO_0000673
so part of: PYTT13_RS23815
location: complement(1960..2094)
location: region:1960-2094:-1
so has part: feature:1960-2094:-1:exon

WP_263597011.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1960-2094:-1:exon

PYTT13_RS22515
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22515
old locus tag: PYTT13_22430
so part of: sequence
location: complement(2281..2892)
location: region:2281-2892:-1
so has part: feature:2281-2892:-1:exon
subclass of: SO_0000010

position:2281:-1
position: 2281
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2892:-1
position: 2892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2281-2892:-1:exon

PYTT13_RS22515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22515
old locus tag: PYTT13_22430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016193176.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTLYGYARVSTTDQDLALQETALRTAGCQVIRSEKKTGTRREGRAELDILLQFLRAGDTLVITRIDRLARSLKDLQDIVHELKAKGVTLKATEQPVDTSTAAGKAFFDMLGVFAEFETNLRRERQMEGIAAAKVRGVYKGRKPKIDPAEVRRLHFEERLSPTAIAKQLGIARSSVYRFLPAPKQPVAQELTPPNRRGAQSPEA
SIO_010081: PYTT13_RS22515
subclass of: SO_0000673
so part of: PYTT13_RS22515
location: complement(2281..2892)
location: region:2281-2892:-1
so has part: feature:2281-2892:-1:exon

WP_051578253.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2281-2892:-1:exon

PYTT13_RS22525
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22525
old locus tag: PYTT13_22440
so part of: sequence
location: 3658..5142
location: region:3658-5142:1
so has part: feature:3658-5142:1:exon
subclass of: SO_0000010

position:3658:1
position: 3658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5142:1
position: 5142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3658-5142:1:exon

PYTT13_RS22525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22525
old locus tag: PYTT13_22440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009452661.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: multicopper oxidase family protein
translation: MTLTRRGFLAASAAMAATTAWPRLAAAGEQPLSLTATTRVIEVDGRAATVMGLANGSGGQGLILDPGQRFRVDLTNALAEDTIIHWHGQIPPNAQDGVPGLPMPLLKPGETRSFDYAPLPGTFWMHSHVPLQEMSLLAAPLIVRRPEDLAADRQEVVMFLHDFSFRPPSEVMAELVEGGGHHDMAAMGAPAAGHGAMAGMDHSGMAMGGTGHSGMGGMAMDLNDIEFDAYLANDRTLADPEVIAVERGGRVLLRVINAAAATSFWIDTGGIAARLVAVDGHPVAPVKGTRFGLAMGQRLDLEIDIPDAGAFPILALREGARERTGIVLATPGASVPRIEAMGDSASGAFDIDLAQEGLLRAALADAETSLAARPADRSHMIMLGGSMQPYLWTIDGRTWGDHRPITARTGERVHLTFHNMSMMGHPMHLHGHVFQVVNVNGQAISGALRDTVYVPPMAMVTVALDAGEAARWMLHCHHMPHLFTGMMTEFAVTA
SIO_010081: PYTT13_RS22525
subclass of: SO_0000673
so part of: PYTT13_RS22525
location: 3658..5142
location: region:3658-5142:1
so has part: feature:3658-5142:1:exon

WP_028720319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3658-5142:1:exon

PYTT13_RS22530
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22530
old locus tag: PYTT13_22445
pseudo: true
so part of: sequence
location: 5276..5724
location: region:5276-5724:1
so has part: feature:5276-5724:1:exon
subclass of: SO_0000010

position:5276:1
position: 5276
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5724:1
position: 5724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5276-5724:1:exon

PYTT13_RS22530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22530
old locus tag: PYTT13_22445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009808012.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: cytochrome c
SIO_010081: PYTT13_RS22530
subclass of: SO_0000673
so part of: PYTT13_RS22530
location: 5276..5724
location: region:5276-5724:1
so has part: feature:5276-5724:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5276-5724:1:exon

PYTT13_RS22535
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
gene: cueR
locus tag: PYTT13_RS22535
old locus tag: PYTT13_22450
so part of: sequence
location: 5739..6146
location: region:5739-6146:1
so has part: feature:5739-6146:1:exon
subclass of: SO_0000010

position:5739:1
position: 5739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6146:1
position: 6146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5739-6146:1:exon

PYTT13_RS22535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
gene: cueR
locus tag: PYTT13_RS22535
old locus tag: PYTT13_22450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008231223.1
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Cu(I)-responsive transcriptional regulator
translation: MNITEAARASGLSAKTIRYYEEIGLVSPQRGTNGYRHFGAEDVQRLTFLGRARRLDFPLQDCRELLTLSADTHRSSADVREIALRHLAQVDERLAELGQLREALQQLVDSCAGDARPDCAILDALSGGPPDANGR
SIO_010081: PYTT13_RS22535
subclass of: SO_0000673
so part of: PYTT13_RS22535
location: 5739..6146
location: region:5739-6146:1
so has part: feature:5739-6146:1:exon

WP_028720321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5739-6146:1:exon

PYTT13_RS22540
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22540
old locus tag: PYTT13_22455
pseudo: true
so part of: sequence
location: complement(6143..6597)
location: region:6143-6597:-1
so has part: feature:6143-6597:-1:exon
subclass of: SO_0000010

position:6143:-1
position: 6143
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6597:-1
position: 6597
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6143-6597:-1:exon

PYTT13_RS22540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22540
old locus tag: PYTT13_22455
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010437341.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: cytochrome c
SIO_010081: PYTT13_RS22540
subclass of: SO_0000673
so part of: PYTT13_RS22540
location: complement(6143..6597)
location: region:6143-6597:-1
so has part: feature:6143-6597:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6143-6597:-1:exon

PYTT13_RS22545
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22545
old locus tag: PYTT13_22460
so part of: sequence
location: 6722..6922
location: region:6722-6922:1
so has part: feature:6722-6922:1:exon
subclass of: SO_0000010

position:6722:1
position: 6722
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6922:1
position: 6922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6722-6922:1:exon

PYTT13_RS22545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22545
old locus tag: PYTT13_22460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015500471.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: heavy-metal-associated domain-containing protein
translation: MRFHIPNMSCGGCARGVTRAIESVDAKARITIDQASREVEVSTDLPRPQIAAALAAAGYPAAPTAA
SIO_010081: PYTT13_RS22545
subclass of: SO_0000673
so part of: PYTT13_RS22545
location: 6722..6922
location: region:6722-6922:1
so has part: feature:6722-6922:1:exon

WP_028720323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6722-6922:1:exon

PYTT13_RS22550
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22550
old locus tag: PYTT13_22465
so part of: sequence
location: 7055..9394
location: region:7055-9394:1
so has part: feature:7055-9394:1:exon
subclass of: SO_0000010

position:7055:1
position: 7055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9394:1
position: 9394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7055-9394:1:exon

PYTT13_RS22550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22550
old locus tag: PYTT13_22465
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011242142.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: copper-translocating P-type ATPase
translation: MHPEVRQPGPGRCPKCGMHLVPEAEASGAAAGPACHGHEHHGHGASAHHARGHDTAARSEPGKTYDHVPPGWTGAVYTCPMHPEVRQTEAGSCPICGMGLELESAAMVDDGPNPELVDFTRRFWVGAALTVPLLVLTMGPLVGLGGVRSIFGERATLWIELILGTPVVLWSGWPFLVRGWRSFRSGNLNMFSLIAMGVMAAWLFSVAAVLAPQIFPAGFRDAEGHVGVYFEAAAVIVTLVLLGQIMELRAREGTGRAIRALLDLAPATARLIRPDGSDTEVQLDAVQVGDRLRVRPGDKVPVDGVVAEGRSSVDESMITGEPLPVEKVSGDPVTGATINGTGSLVIEATRVGADTMLSQIVEMVSNAQRSRAPIQKYADKVAGLFVPAVIGVAIVAFVAWAIWGPAPSLSYGLVAAVAVLIIACPCALGLATPMSIMTATGRGAQAGVLIKNAEALERFETVDTLIVDKTGTLTEGRPRLVAVLPEPGHDEDAILRLAASLERGSEHPLAEAIVRGAEERGVEMVEAGEFEAVTGQGVRGTVDGQPVALGNIRLLADMGLDVGALTARADARRDEGETVMFVVVDGAVAGMVAVADPVKDTTPSALKALHALGFRIIMATGDNERTARAVAARLGIDEIRADVLPQDKARIIAELQAAGRKVAMAGDGVNDAPALAQADVGIAMGTGADVAIESAGITLVRGNLDGIVRARRLAQATMRNIRQNLFFALIYNAAGVPIAAGLLYPFFGILISPMFAAFAMSASSISVVLNALRLRTVRV
SIO_010081: PYTT13_RS22550
subclass of: SO_0000673
so part of: PYTT13_RS22550
location: 7055..9394
location: region:7055-9394:1
so has part: feature:7055-9394:1:exon

WP_198406731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7055-9394:1:exon

PYTT13_RS22555
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22555
old locus tag: PYTT13_22470
so part of: sequence
location: 9492..9824
location: region:9492-9824:1
so has part: feature:9492-9824:1:exon
subclass of: SO_0000010

position:9492:1
position: 9492
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9824:1
position: 9824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9492-9824:1:exon

PYTT13_RS22555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22555
old locus tag: PYTT13_22470
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015821476.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: four-helix bundle copper-binding protein
translation: MHHQSADMQACIEACLDCHKTCLGMAMNHCLEAGGKHLEPEHFRLMIACAEICQASANVMLTGSDIHKRLCAVCAEICEQCAASCEQVGDMQDCVDACRRCAESCRKMAA
SIO_010081: PYTT13_RS22555
subclass of: SO_0000673
so part of: PYTT13_RS22555
location: 9492..9824
location: region:9492-9824:1
so has part: feature:9492-9824:1:exon

WP_036719174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9492-9824:1:exon

PYTT13_RS22560
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22560
old locus tag: PYTT13_22475
so part of: sequence
location: complement(9918..10631)
location: region:9918-10631:-1
so has part: feature:9918-10631:-1:exon
subclass of: SO_0000010

position:9918:-1
position: 9918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10631:-1
position: 10631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9918-10631:-1:exon

PYTT13_RS22560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22560
old locus tag: PYTT13_22475
EC number: 2.3.2.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018303679.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: L,D-transpeptidase
translation: MITRRNFAVASAAVLLSACTRPVAKPAAPPPHPPVKPAAPAVPFLPMPDFYGAITDEPYPIPAVPPGVVPPHLWRQEVVNPFPDEPPGTIIVDPDAGMLHLLETKDRAMRYGAGTGRAAFAWSGDARLQFRRKWPRWKVPDEMIARRPELEPYSVANGGMEPGPGNPLGARALYLFQNGEDTLYRIHGACEPEYLGKAVSSGCVRLLDQDAIDLYRRARHGATVRVLPSTLPATLSA
SIO_010081: PYTT13_RS22560
subclass of: SO_0000673
so part of: PYTT13_RS22560
location: complement(9918..10631)
location: region:9918-10631:-1
so has part: feature:9918-10631:-1:exon

WP_099650859.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9918-10631:-1:exon

PYTT13_RS23055
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS23055
so part of: sequence
location: 11215..11844
location: region:11215-11844:1
so has part: feature:11215-11844:1:exon
subclass of: SO_0000010

position:11215:1
position: 11215
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11844:1
position: 11844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11215-11844:1:exon

PYTT13_RS23055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS23055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRAIAVHLEVSASRLTHSGGIMALMKLMRFQTPCTISRRLPAADPRGCPLNGSETDGRVYAARQTDCLNGDAAMPWTFLVDRLQRAAAMLLLLGFAAFALQAAVQPALAAHMTHASQTAAAADQGCAHFPAAGGMDSESATETGCSDDSRSSLRHDCCIQFCTFVAVLPEMSLVEPTRADDVLPFLWSHRSGRALDGVLRPPRLSASL
SIO_010081: PYTT13_RS23055
subclass of: SO_0000673
so part of: PYTT13_RS23055
location: 11215..11844
location: region:11215-11844:1
so has part: feature:11215-11844:1:exon

WP_157767491.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11215-11844:1:exon

PYTT13_RS22565
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22565
old locus tag: PYTT13_22480
so part of: sequence
location: 11985..13517
location: region:11985-13517:1
so has part: feature:11985-13517:1:exon
subclass of: SO_0000010

position:11985:1
position: 11985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13517:1
position: 13517
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11985-13517:1:exon

PYTT13_RS22565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22565
old locus tag: PYTT13_22480
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013654523.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF305 domain-containing protein
translation: MKRTAIAFSVSLLAALPAAALAQAGHDTHHDPQPPVQADQTPATAAGAMAAMPGMPEQCRIMMQGMPSECMTAMQQMMQGGMMQGMMATPDAAPGGENRPDFTRAYVDTMDAMHGPMMEGAMADDPDMAFVRGMIPHHQGAIAMAKIVQQYGDDPETRGWAARIVEAQEGEIAEMQAWLDRKASPKSVDFGQTGGTVWSANEGGNSLSAIDLGTGAVTTVPLPVSPHNVDLTPDGRFLVAVGSPAAGDHAAGGHGHAEDGAAAGLLVILDPADRSQPAVTAGVGSHPAHVVADGQGRAFVSLSGGNEVAVVDLARAEVIGRVGTGASPHGLRLSPDGAELYVANVEDGSVSVIDTASLTEAARLPVGAAPVQVGFTPDGGKVYVSLRDENRVAVIDTATREVVGKVEVGPGPIQLVATADGKQVYVANQGPENAPNDTVSVIDAATGQVAKTLKTGLGAHGVSASADGALVFVTNTADDSVSVIDVRQQNVLGTMPVGDGPNGIVYASPN
SIO_010081: PYTT13_RS22565
subclass of: SO_0000673
so part of: PYTT13_RS22565
location: 11985..13517
location: region:11985-13517:1
so has part: feature:11985-13517:1:exon

WP_028720327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11985-13517:1:exon

PYTT13_RS22570
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22570
old locus tag: PYTT13_22485
so part of: sequence
location: complement(13621..14163)
location: region:13621-14163:-1
so has part: feature:13621-14163:-1:exon
subclass of: SO_0000010

position:13621:-1
position: 13621
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14163:-1
position: 14163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13621-14163:-1:exon

PYTT13_RS22570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22570
old locus tag: PYTT13_22485
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019995533.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF305 domain-containing protein
translation: MSYARFGLMILTSTVVMYGLMYLNTYELDHVAWSQTRAWMALLMGGVMAVIMMGFMWAMYDKKGRNWGIIAAAVIVAAGSLWFVRSQATVGDVSYMEAMIPHHSIAVLTSSRAHIRDPRVRELADGIIKAQMQEIAEMRALIADLDANPIPDAAPDLPPLRPDDVAVGEAVEKALQPPAQ
SIO_010081: PYTT13_RS22570
subclass of: SO_0000673
so part of: PYTT13_RS22570
location: complement(13621..14163)
location: region:13621-14163:-1
so has part: feature:13621-14163:-1:exon

WP_051578254.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13621-14163:-1:exon

PYTT13_RS23680
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS23680
so part of: sequence
location: complement(14189..14881)
location: region:14189-14881:-1
so has part: feature:14189-14881:-1:exon
subclass of: SO_0000010

position:14189:-1
position: 14189
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14881:-1
position: 14881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14189-14881:-1:exon

PYTT13_RS23680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS23680
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDQRSWEALTTGHVRLPRQRVPADLWFRLLRSLLEELNTPISRCGAGSRSLRAVWNHFGQPLRAGRLTWQPFEALGLPAQLQMLEVAANAIELIETEAIRPLGAQAELFLPGPGAELTLDRLMRILRRKSGKGWQEAWKVVHDAIADAQHNPETARALYALASCGKRHDPVALEGLRALFIEAQVSQEFLPLEGSEALSALRSTCAQGLSLALRKLPPTGCREPCLERAG
SIO_010081: PYTT13_RS23680
subclass of: SO_0000673
so part of: PYTT13_RS23680
location: complement(14189..14881)
location: region:14189-14881:-1
so has part: feature:14189-14881:-1:exon

WP_224767596.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14189-14881:-1:exon

PYTT13_RS23685
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS23685
so part of: sequence
location: complement(14934..15461)
location: region:14934-15461:-1
so has part: feature:14934-15461:-1:exon
subclass of: SO_0000010

position:14934:-1
position: 14934
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15461:-1
position: 15461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14934-15461:-1:exon

PYTT13_RS23685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS23685
inference: COORDINATES: protein motif:HMM:NF018259.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TniQ family protein
translation: MKSASRWPLHPEPQEGEALSSWLRRVAGCYDIDARELLKHDLGQGLHDDLDVNPAPGLLRLLSRRSGVDLKRLHRMSLAGWAPDLFDSLEGADPDALEDYAFRLTILLQDRSRATRSVAGWRAWRPDRPISRACPLHGRAGRSAHVADVDGAADAELPPARLLAGSLLGPPWHIR
SIO_010081: PYTT13_RS23685
subclass of: SO_0000673
so part of: PYTT13_RS23685
location: complement(14934..15461)
location: region:14934-15461:-1
so has part: feature:14934-15461:-1:exon

WP_224767595.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14934-15461:-1:exon

PYTT13_RS22580
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22580
old locus tag: PYTT13_22495
so part of: sequence
location: complement(15458..16366)
location: region:15458-16366:-1
so has part: feature:15458-16366:-1:exon
subclass of: SO_0000010

position:15458:-1
position: 15458
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16366:-1
position: 16366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15458-16366:-1:exon

PYTT13_RS22580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22580
old locus tag: PYTT13_22495
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004722030.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TniB family NTP-binding protein
translation: MDASPSNDLSHLLPAAQRLARLPAEERIRHIRADRWIGYPRAVDALQKLEALQAWPTKQRMPNLLLIGPTNNGKSMIVEKFRRTHPPESAADQEYIPVLAVQMPSEPSVLRLYMALLAAMGAPLHPRRRLAEVEQLALKLLRRVGVRMLVIDELHNILAGNGPARRECLNLLRFLGNELRIPLVGVGTREAYLAIRLDDQLENRFEPMTLPLWEPDDACCSLLASFAASLPLRQQSPIATPDMARYLLARSEGTIGELARLLMAAAIAAVESGEEAINARTLGMADYAGPGERRRQFERELR
SIO_010081: PYTT13_RS22580
subclass of: SO_0000673
so part of: PYTT13_RS22580
location: complement(15458..16366)
location: region:15458-16366:-1
so has part: feature:15458-16366:-1:exon

WP_036734700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15458-16366:-1:exon

PYTT13_RS22585
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22585
old locus tag: PYTT13_22500
so part of: sequence
location: complement(16369..18045)
location: region:16369-18045:-1
so has part: feature:16369-18045:-1:exon
subclass of: SO_0000010

position:16369:-1
position: 16369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18045:-1
position: 18045
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16369-18045:-1:exon

PYTT13_RS22585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22585
old locus tag: PYTT13_22500
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013124600.1
GO process: GO:0015074 - DNA integration [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DDE-type integrase/transposase/recombinase
translation: MAGETAQITEQGVATLSNERWEEARRRADVIGPLAQHDMVGHQAADEAARALGLSRRQIYVLIRRARQGGGLVTDLAPRQSSGGKGKARLPEPVERVIRDLLQKHFLGKQKPSLAAVHRKVVKECTAQGLQAPVRNTVALRVSRLDPVTTARRRMGKDAERTLTGAGGVPPPITAPLEQVQIDHTVVDLIVVDERDRQPIGRPYLTVAIDTFTRCVIGLVVTLEAPSALSVGLCLAHAACDKRPWLEDLGLDMDWPMGGKPRQLYLDNAPEFRSEALRRGCEQHGIGLDYRPPGQPHYGGIVERVIGTAMRMVHDELPGTTFSNPEQRGDTDPERTAVLTLRELERWLALAVGTYHGTVHGSLLQPPAARWAEAVAQGGPPTVVTHAAAFLIDFLPVIRRTLTRTGFVIDHIRYYADALKPWIARRDHLSAFLIRRDPRDVSRVWVLEPEGKYYLEVPYLTLAHPAVTLWEQRRALARLRELGHEKVDEASLFRMIGQMRDIVATARKATRKTRREADRRRHLTAKPPPAALVPPSVDTTGPAGKLPPASPFDEIEEW
SIO_010081: PYTT13_RS22585
subclass of: SO_0000673
so part of: PYTT13_RS22585
location: complement(16369..18045)
location: region:16369-18045:-1
so has part: feature:16369-18045:-1:exon

WP_099650860.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16369-18045:-1:exon

PYTT13_RS22595
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22595
old locus tag: PYTT13_22505
so part of: sequence
location: 18323..18742
location: region:18323-18742:1
so has part: feature:18323-18742:1:exon
subclass of: SO_0000010

position:18323:1
position: 18323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18742:1
position: 18742
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18323-18742:1:exon

PYTT13_RS22595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22595
old locus tag: PYTT13_22505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGQVRHACATTTHAVRTAIQRSQASTAALSRELGIDPKTVAKWRKRETVEDRKTGPKEPRSTVLSEGEEAMVVAFRRYHYDSHDQLRTHLADFMAAYNFARRLKALSGLTPYEYICKIWTSEPDRFIVNPIHQMPGLNT
SIO_010081: PYTT13_RS22595
subclass of: SO_0000673
so part of: PYTT13_RS22595
location: 18323..18742
location: region:18323-18742:1
so has part: feature:18323-18742:1:exon

WP_099650861.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18323-18742:1:exon

PYTT13_RS22600
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22600
old locus tag: PYTT13_22510
so part of: sequence
location: complement(18779..20443)
location: region:18779-20443:-1
so has part: feature:18779-20443:-1:exon
subclass of: SO_0000010

position:18779:-1
position: 18779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20443:-1
position: 20443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18779-20443:-1:exon

PYTT13_RS22600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22600
old locus tag: PYTT13_22510
inference: COORDINATES: protein motif:HMM:NF013862.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: patatin-like phospholipase family protein
translation: MAIPFRFAFQGGGAKFVTLLAAAKAIYDLEQEDIIQIDHVAGTSAGAIAAGLLASGIDPAIYRNHLRSNGHSYLSKVLKPRNKYHTAFRVFVQGHSLYDHYELRKFIEGILSAGGIDPSITINDTKHNLSIITSDLNARGEKIYCRLKEKSSSQLSAAIANSCSLPIIFKSIRGISENHIVDGGIVNNLPISHISDSFEKSRIVAFSFEKELSSGKNNSLSEYVMSLIDTSINSNIISSMKFLPETNIFKLPNNFSTMSFKEALSSGLDDHFDNVRDKTRASLLSLADQEARLDFKKRNGTKLSRTINEKQSAAEIFNALYREDIEFERLEVCMIMNSLRDKEDPEFRVLDIMHTTYKIPLKNKISGIIPVKVFIASNSGEIDLTASEIEIFDDHGRSINFSVLVGEVRKFSTSYNFPLYIFIKCSDISPDAKYITVRHIDTVENAMPDIFEAKNSKPGKAVSEAIAMICSQPKYNNVEWRVHLPASIMKHVKVSPLNKPDENVHYSGIANGIINEDLQGDQRRPINYRVIQWKSTEPVFEGQAAGFDISLNPF
SIO_010081: PYTT13_RS22600
subclass of: SO_0000673
so part of: PYTT13_RS22600
location: complement(18779..20443)
location: region:18779-20443:-1
so has part: feature:18779-20443:-1:exon

WP_157767493.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18779-20443:-1:exon

PYTT13_RS22605
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22605
old locus tag: PYTT13_22515
pseudo: true
so part of: sequence
location: complement(<20760..20960)
location: region:20760-20960:-1
so has part: feature:20760-20960:-1:exon
subclass of: SO_0000010

position:20760:-1
position: 20760
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:20960:-1
position: 20960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20760-20960:-1:exon

PYTT13_RS22605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22605
old locus tag: PYTT13_22515
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611977.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: transposase
SIO_010081: PYTT13_RS22605
subclass of: SO_0000673
so part of: PYTT13_RS22605
location: complement(<20760..20960)
location: region:20760-20960:-1
so has part: feature:20760-20960:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:20760-20960:-1:exon

PYTT13_RS23690
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
gene: mobQ
locus tag: PYTT13_RS23690
pseudo: true
so part of: sequence
location: complement(<21802..22524)
location: region:21802-22524:-1
so has part: feature:21802-22524:-1:exon
subclass of: SO_0000010

position:21802:-1
position: 21802
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:22524:-1
position: 22524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21802-22524:-1:exon

PYTT13_RS23690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
gene: mobQ
locus tag: PYTT13_RS23690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019089584.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: MobQ family relaxase
SIO_010081: PYTT13_RS23690
subclass of: SO_0000673
so part of: PYTT13_RS23690
location: complement(<21802..22524)
location: region:21802-22524:-1
so has part: feature:21802-22524:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:21802-22524:-1:exon

PYTT13_RS22615
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22615
old locus tag: PYTT13_22525
pseudo: true
so part of: sequence
location: 23283..>23519
location: region:23283-23519:1
so has part: feature:23283-23519:1:exon
subclass of: SO_0000010

position:23283:1
position: 23283
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23519:1
position: 23519
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23283-23519:1:exon

PYTT13_RS22615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22615
old locus tag: PYTT13_22525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013635167.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: mobilization protein
SIO_010081: PYTT13_RS22615
subclass of: SO_0000673
so part of: PYTT13_RS22615
location: 23283..>23519
location: region:23283-23519:1
so has part: feature:23283-23519:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:23283-23519:1:exon

PYTT13_RS23330
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS23330
so part of: sequence
location: 23865..24077
location: region:23865-24077:1
so has part: feature:23865-24077:1:exon
subclass of: SO_0000010

position:23865:1
position: 23865
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24077:1
position: 24077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23865-24077:1:exon

PYTT13_RS23330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS23330
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRFLLLGFLTGAICALVALALGAQWWMILLTYAIAGTLGTFANALWFVYGPARTDEPDQEPASDAIRQDI
SIO_010081: PYTT13_RS23330
subclass of: SO_0000673
so part of: PYTT13_RS23330
location: 23865..24077
location: region:23865-24077:1
so has part: feature:23865-24077:1:exon

WP_191569546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23865-24077:1:exon

PYTT13_RS22620
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS22620
old locus tag: PYTT13_22530
pseudo: true
so part of: sequence
location: <24074..>24265
location: region:24074-24265:1
so has part: feature:24074-24265:1:exon
subclass of: SO_0000010

position:24074:1
position: 24074
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:24265:1
position: 24265
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24074-24265:1:exon

PYTT13_RS22620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS22620
old locus tag: PYTT13_22530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012881262.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
SIO_010081: PYTT13_RS22620
subclass of: SO_0000673
so part of: PYTT13_RS22620
location: <24074..>24265
location: region:24074-24265:1
so has part: feature:24074-24265:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24074-24265:1:exon

PYTT13_RS23695
type: Gene
subclass of: SO_0000704
RO_0002162: 147645
locus tag: PYTT13_RS23695
pseudo: true
so part of: sequence
location: complement(24196..>24555)
location: region:24196-24555:-1
so has part: feature:24196-24555:-1:exon
subclass of: SO_0000010

position:24196:-1
position: 24196
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24555:-1
position: 24555
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24196-24555:-1:exon

PYTT13_RS23695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 147645
locus tag: PYTT13_RS23695
inference: COORDINATES: protein motif:HMM:NF039997.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: PYTT13_RS23695
subclass of: SO_0000673
so part of: PYTT13_RS23695
location: complement(24196..>24555)
location: region:24196-24555:-1
so has part: feature:24196-24555:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:24196-24555:-1:exon