Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus.
Complete genome sequence of Paracoccus yeei TT13 isolated from human skin
Submitted (27-OCT-2017) Bio Health Science, Changwon National University, Changwondaero, Changwon, Gyeongnam 51140, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP024423.1.\nBacteria and source DNA available from Prof Kyoung Lee, Changwon\nNational University.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRTpipe HGAP v. 3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 178.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/09/2023 03:30:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,573\nCDSs (total) :: 4,510\nGenes (coding) :: 4,349\nCDSs (with protein) :: 4,349\nGenes (RNA) :: 63\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 161\nCDSs (without protein) :: 161\nPseudo Genes (ambiguous residues) :: 0 of 161\nPseudo Genes (frameshifted) :: 58 of 161\nPseudo Genes (incomplete) :: 136 of 161\nPseudo Genes (internal stop) :: 18 of 161\nPseudo Genes (multiple problems) :: 46 of 161\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008558591.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018001451.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007677592.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015497142.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001423.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396510.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396512.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015225 - biotin transmembrane transporter activity [Evidence IEA]
GO:0015878 - biotin transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001449.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011750987.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001447.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396598.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001445.1
COORDINATES: similar to AA sequence:RefSeq:WP_011841962.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010395373.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011841460.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017373424.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012638900.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011336741.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011336740.1
COORDINATES: similar to AA sequence:RefSeq:WP_011336739.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
Fe(3+)-hydroxamate ABC transporter permease FhuB
COORDINATES: similar to AA sequence:RefSeq:WP_002722069.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750429.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750469.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999665.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005854457.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010400419.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008209703.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: similar to AA sequence:RefSeq:WP_011751340.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011751339.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000994.1
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0042398 - cellular modified amino acid biosynthetic process [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011474056.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825770.1
COORDINATES: similar to AA sequence:RefSeq:WP_009825772.1
COORDINATES: protein motif:HMM:NF016145.2
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008834276.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001492.1
GO:0004857 - enzyme inhibitor activity [Evidence IEA]
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001493.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008885621.1
GO:0032955 - regulation of division septum assembly [Evidence IEA]
cell division topological specificity factor MinE
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611562.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611945.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611842.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611537.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611845.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011508812.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012224168.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611844.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012888.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012642356.1
glycoside hydrolase family 99-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008957181.1
GO:0003868 - 4-hydroxyphenylpyruvate dioxygenase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009723103.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395468.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748003.1
COORDINATES: similar to AA sequence:RefSeq:WP_011748002.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001312.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0030058 - amine dehydrogenase activity [Evidence IEA]
GO:0009310 - amine catabolic process [Evidence IEA]
quinohemoprotein amine dehydrogenase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018001313.1
quinohemoprotein amine dehydrogenase subunit gamma
COORDINATES: similar to AA sequence:RefSeq:WP_010395459.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0043687 - post-translational protein modification [Evidence IEA]
quinohemoprotein amine dehydrogenase maturation protein
COORDINATES: similar to AA sequence:RefSeq:WP_011747998.1
quinohemoprotein amine dehydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_018001316.1
COORDINATES: similar to AA sequence:RefSeq:WP_007710779.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017773.2
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: protein motif:HMM:TIGR04267.2
HEXXH motif-containing putative peptide modification protein
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_011750810.1
COORDINATES: similar to AA sequence:RefSeq:WP_005391015.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011440039.1
COORDINATES: similar to AA sequence:RefSeq:WP_004091824.1
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor [Evidence IEA]
GO:0006089 - lactate metabolic process [Evidence IEA]; GO:0019516 - lactate oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009819198.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999534.1
Twin-arginine translocation pathway signal
COORDINATES: similar to AA sequence:RefSeq:WP_009561434.1
COORDINATES: similar to AA sequence:RefSeq:WP_007199942.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018855336.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010393482.1
GO:0004488 - methylenetetrahydrofolate dehydrogenase (NADP+) activity [Evidence IEA]
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD
COORDINATES: similar to AA sequence:RefSeq:WP_018001667.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001666.1
GO:0008115 - sarcosine oxidase activity [Evidence IEA]
sarcosine oxidase subunit alpha family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011751126.1
COORDINATES: similar to AA sequence:RefSeq:WP_008559410.1
GO:0046653 - tetrahydrofolate metabolic process [Evidence IEA]
sarcosine oxidase subunit beta family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001663.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001662.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001661.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001660.1
dimethylamine monooxygenase subunit DmmA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019856865.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001658.1
COORDINATES: similar to AA sequence:RefSeq:WP_015318921.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294533.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001655.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001654.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003575008.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018001652.1
FMN-binding glutamate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008759548.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503501.1
glutamine amidotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018001670.1
COORDINATES: similar to AA sequence:RefSeq:WP_008884937.1
COORDINATES: similar to AA sequence:RefSeq:WP_009561349.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723707.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004579325.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206695.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530409.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013530408.1
GO:0008679 - 2-hydroxy-3-oxopropionate reductase activity [Evidence IEA]
GO:0019580 - galactarate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013530407.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206699.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719888.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530404.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015314308.1
COORDINATES: similar to AA sequence:RefSeq:WP_012643464.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015004368.1
COORDINATES: similar to AA sequence:RefSeq:WP_014132920.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206710.1
COORDINATES: similar to AA sequence:RefSeq:WP_014132923.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006206712.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006206713.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_020812708.1
COORDINATES: similar to AA sequence:RefSeq:WP_006206715.1
COORDINATES: similar to AA sequence:RefSeq:WP_008229581.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013530403.1
COORDINATES: similar to AA sequence:RefSeq:WP_015004385.1
COORDINATES: similar to AA sequence:RefSeq:WP_014132929.1
amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013530399.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008120536.1
COORDINATES: similar to AA sequence:RefSeq:WP_013530397.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016558605.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660907.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020040785.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011336755.1
COORDINATES: similar to AA sequence:RefSeq:WP_011388787.1
COORDINATES: similar to AA sequence:RefSeq:WP_014741972.1
GO:0008851 - ethanolamine ammonia-lyase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015931502.1
COORDINATES: similar to AA sequence:RefSeq:WP_019996427.1
COORDINATES: similar to AA sequence:RefSeq:WP_007425254.1
COORDINATES: similar to AA sequence:RefSeq:WP_012760570.1
GO:0016020 - membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
COORDINATES: similar to AA sequence:RefSeq:WP_003164269.1
COORDINATES: similar to AA sequence:RefSeq:WP_006727639.1
COORDINATES: similar to AA sequence:RefSeq:WP_006727638.1
COORDINATES: similar to AA sequence:RefSeq:WP_013500359.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019401805.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_015343352.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018430435.1
COORDINATES: similar to AA sequence:RefSeq:WP_011841462.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_020812567.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_011338257.1
COORDINATES: similar to AA sequence:RefSeq:WP_020051860.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_011841463.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018065026.1
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015917219.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001330.1
GO:0006281 - DNA repair [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada
COORDINATES: similar to AA sequence:RefSeq:WP_013539167.1
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_011750637.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007197887.1
COORDINATES: similar to AA sequence:RefSeq:WP_014331914.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001299.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
efflux transporter outer membrane subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011749216.1
COORDINATES: similar to AA sequence:RefSeq:WP_003569039.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018001302.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012650249.1
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_019951399.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115288.1
COORDINATES: similar to AA sequence:RefSeq:WP_019861505.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492582.1
COORDINATES: similar to AA sequence:RefSeq:WP_013253594.1
COORDINATES: similar to AA sequence:RefSeq:WP_014266090.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008741 - ribulokinase activity [Evidence IEA]
GO:0019569 - L-arabinose catabolic process to xylulose 5-phosphate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012936250.1
COORDINATES: similar to AA sequence:RefSeq:WP_013961452.1
D-lyxose/D-mannose family sugar isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_010395022.1
COORDINATES: protein motif:HMM:NF013696.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015120070.1
COORDINATES: protein motif:HMM:NF015995.2
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
glycine betaine ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016494828.1
GO:0009013 - succinate-semialdehyde dehydrogenase [NAD(P)+] activity [Evidence IEA]
GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA]
NADP-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_015478023.1
COORDINATES: similar to AA sequence:RefSeq:WP_003111562.1
COORDINATES: similar to AA sequence:RefSeq:WP_019121956.1
COORDINATES: similar to AA sequence:RefSeq:WP_010915908.1
COORDINATES: similar to AA sequence:RefSeq:WP_019951055.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724849.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008757187.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957157.1
COORDINATES: similar to AA sequence:RefSeq:WP_003592840.1
COORDINATES: similar to AA sequence:RefSeq:WP_013833472.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612405.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611133.1
COORDINATES: similar to AA sequence:RefSeq:WP_007424543.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750780.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400165.1
COORDINATES: similar to AA sequence:RefSeq:WP_010400163.1
GO:0008773 - [protein-PII] uridylyltransferase activity [Evidence IEA]
DUF294 nucleotidyltransferase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011764712.1
COORDINATES: similar to AA sequence:RefSeq:WP_004361865.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001288.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017999249.1
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011909346.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750456.1
SCP2 sterol-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011750455.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999253.1
COORDINATES: similar to AA sequence:RefSeq:WP_017999254.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011747465.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012760461.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910274.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: protein motif:HMM:NF013862.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012643358.1
COORDINATES: protein motif:HMM:NF013502.2
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF013867.2
COORDINATES: protein motif:HMM:TIGR00229.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012046129.1
COORDINATES: similar to AA sequence:RefSeq:WP_015926997.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611129.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005228.1
COORDINATES: similar to AA sequence:RefSeq:WP_003588134.1
four-carbon acid sugar kinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017999704.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140563.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019997205.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018000586.1
COORDINATES: similar to AA sequence:RefSeq:WP_003529462.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007691244.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973324.1
COORDINATES: protein motif:HMM:NF016513.2
COORDINATES: protein motif:HMM:NF012422.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012331533.1
COORDINATES: similar to AA sequence:RefSeq:WP_017505213.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977659.1
COORDINATES: similar to AA sequence:RefSeq:WP_011909228.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011337329.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013384130.1
COORDINATES: similar to AA sequence:RefSeq:WP_013384622.1
COORDINATES: similar to AA sequence:RefSeq:WP_018000916.1
COORDINATES: protein motif:HMM:NF040354.1
COORDINATES: similar to AA sequence:RefSeq:WP_013383500.1
COORDINATES: similar to AA sequence:RefSeq:WP_003494732.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003581078.1
putative DNA modification/repair radical SAM protein
COORDINATES: protein motif:HMM:NF024701.2
TetR-like C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018303009.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014284513.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009572678.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_014763313.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007608297.1
COORDINATES: similar to AA sequence:RefSeq:WP_004431056.1
COORDINATES: similar to AA sequence:RefSeq:WP_011747973.1
COORDINATES: similar to AA sequence:RefSeq:WP_006316530.1
COORDINATES: similar to AA sequence:RefSeq:WP_006700209.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008124507.1
COORDINATES: similar to AA sequence:RefSeq:WP_011395119.1
COORDINATES: similar to AA sequence:RefSeq:WP_020810193.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020808852.1
COORDINATES: similar to AA sequence:RefSeq:WP_012061370.1
COORDINATES: similar to AA sequence:RefSeq:WP_003600439.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531404.1
COORDINATES: similar to AA sequence:RefSeq:WP_011339292.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749768.1
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007812602.1
COORDINATES: similar to AA sequence:RefSeq:WP_018900923.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011749771.1
COORDINATES: similar to AA sequence:RefSeq:WP_017328663.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634185.1
COORDINATES: similar to AA sequence:RefSeq:WP_008549402.1
COORDINATES: similar to AA sequence:RefSeq:WP_007254659.1
COORDINATES: similar to AA sequence:RefSeq:WP_007254660.1
COORDINATES: similar to AA sequence:RefSeq:WP_009209640.1
COORDINATES: similar to AA sequence:RefSeq:WP_019964719.1
COORDINATES: similar to AA sequence:RefSeq:WP_018634178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007792990.1
COORDINATES: protein motif:HMM:NF016972.2
COORDINATES: similar to AA sequence:RefSeq:WP_010219186.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723340.1