Alicyclobacillus dauci strain DSM 28700 plasmid unnamed2, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.
Alicyclobacillus dauci DSM2870, complete genome
Submitted (31-AUG-2022) College of Food Science and Engineering, Northwest A&F University, Yangling, Xianyang, Shaanxi 712100, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP104066.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. v1.5; GATK v. v1.6-13\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 452.96x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 11:41:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,892\nCDSs (total) :: 4,746\nGenes (coding) :: 4,598\nCDSs (with protein) :: 4,598\nGenes (RNA) :: 146\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 109\nncRNAs :: 4\nPseudo Genes (total) :: 148\nCDSs (without protein) :: 148\nPseudo Genes (ambiguous residues) :: 0 of 148\nPseudo Genes (frameshifted) :: 79 of 148\nPseudo Genes (incomplete) :: 63 of 148\nPseudo Genes (internal stop) :: 20 of 148\nPseudo Genes (multiple problems) :: 14 of 148\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003230776.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01725.1
COORDINATES: similar to AA sequence:RefSeq:WP_013569758.1
COORDINATES: similar to AA sequence:RefSeq:WP_014465344.1
COORDINATES: similar to AA sequence:RefSeq:WP_015759710.1
COORDINATES: similar to AA sequence:RefSeq:WP_006445304.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF020945.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: protein motif:HMM:NF024519.2
COORDINATES: similar to AA sequence:RefSeq:WP_019121322.1
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_006830487.1
COORDINATES: protein motif:HMM:TIGR02861.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0030436 - asexual sporulation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00379
cyclic di-AMP (ydaO/yuaA leader) riboswitch senses the signaling molecule cyclic di-AMP; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF019095.2
COORDINATES: similar to AA sequence:RefSeq:WP_006446974.1
COORDINATES: similar to AA sequence:RefSeq:WP_011877240.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007938727.1
COORDINATES: similar to AA sequence:RefSeq:WP_016204198.1
COORDINATES: similar to AA sequence:RefSeq:WP_005424373.1
COORDINATES: similar to AA sequence:RefSeq:WP_015592109.1
COORDINATES: similar to AA sequence:RefSeq:WP_009708607.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:TIGR01613.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: similar to AA sequence:RefSeq:WP_018132240.1