Paenibacillus guangzhouensis strain KCTC 33171 plasmid unnamed1, complete sequence.
Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.
Complete genome of Paenibacillus guangzhouensis KCTC 33171
Submitted (17-OCT-2019) College of Agriculture and Life Sciences, Kyungpook National University, Daehak-ro, Daegu 41566, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP045294.1.\nBacteria and source DNA available from Shin's Lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 27-SEP-2019\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 109.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/13/2022 05:18:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,313\nCDSs (total) :: 6,208\nGenes (coding) :: 6,123\nCDSs (with protein) :: 6,123\nGenes (RNA) :: 105\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 74\nncRNAs :: 4\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 25 of 85\nPseudo Genes (incomplete) :: 57 of 85\nPseudo Genes (internal stop) :: 9 of 85\nPseudo Genes (multiple problems) :: 6 of 85\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Paenibacillus guangzhouensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018756911.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018756912.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018756913.1
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: similar to AA sequence:RefSeq:WP_009675609.1
COORDINATES: similar to AA sequence:RefSeq:WP_019419892.1
COORDINATES: similar to AA sequence:RefSeq:WP_006676580.1
COORDINATES: similar to AA sequence:RefSeq:WP_018756917.1
COORDINATES: similar to AA sequence:RefSeq:WP_020616515.1
COORDINATES: similar to AA sequence:RefSeq:WP_018756919.1
COORDINATES: similar to AA sequence:RefSeq:WP_018756920.1
COORDINATES: similar to AA sequence:RefSeq:WP_018756921.1
COORDINATES: protein motif:HMM:TIGR02669.1
COORDINATES: similar to AA sequence:RefSeq:WP_018756923.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: similar to AA sequence:RefSeq:WP_018756924.1
GO:0004342 - glucosamine-6-phosphate deaminase activity [Evidence IEA]
GO:0006046 - N-acetylglucosamine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019422428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006677167.1
COORDINATES: similar to AA sequence:RefSeq:WP_006677166.1
COORDINATES: similar to AA sequence:RefSeq:WP_019006932.1
COORDINATES: similar to AA sequence:RefSeq:WP_006677164.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006677163.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018885509.1
COORDINATES: similar to AA sequence:RefSeq:WP_019421674.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007429606.1
COORDINATES: similar to AA sequence:RefSeq:WP_006677159.1
phage gp6-like head-tail connector protein
COORDINATES: similar to AA sequence:RefSeq:WP_013400144.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004623455.1
COORDINATES: protein motif:HMM:NF020464.2
COORDINATES: similar to AA sequence:RefSeq:WP_013400147.1
COORDINATES: protein motif:HMM:NF013630.2
COORDINATES: similar to AA sequence:RefSeq:WP_010500667.1
COORDINATES: protein motif:HMM:NF016736.2
COORDINATES: protein motif:HMM:NF021583.2