Nostoc edaphicum CCNP1411 plasmid pNe_4, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Nostoc edaphicum CCNP1411 from the Baltic Sea-A New Producer of Nostocyclopeptides
Submitted (10-JUN-2020) Department of Molecular Biology, University of Gdansk, Wita Stwosza 59, Gdansk, Pomorskie 80-308, Poland
REFSEQ INFORMATION: The reference sequence is identical to\nCP054696.1.\nBacteria and source DNA available from University of Gdansk\nInstitute of Oceanography Division of Marine Biotechnology al.\nMarszalka Jozefa Pilsudskiego 46 81-378 Gdynia.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-JUN-2020\nAssembly Method :: Flye v. 2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 163.6x\nSequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 22:31:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,061\nCDSs (total) :: 6,977\nGenes (coding) :: 6,695\nCDSs (with protein) :: 6,695\nGenes (RNA) :: 84\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 4\nPseudo Genes (total) :: 282\nCDSs (without protein) :: 282\nPseudo Genes (ambiguous residues) :: 0 of 282\nPseudo Genes (frameshifted) :: 121 of 282\nPseudo Genes (incomplete) :: 170 of 282\nPseudo Genes (internal stop) :: 44 of 282\nPseudo Genes (multiple problems) :: 46 of 282\nCRISPR Arrays :: 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010995997.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009455376.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016877745.1
COORDINATES: similar to AA sequence:RefSeq:WP_006458820.1
COORDINATES: similar to AA sequence:RefSeq:WP_015133045.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201529.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012784.2
GO:0003676 - nucleic acid binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
S1 RNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012618.2
COORDINATES: similar to AA sequence:RefSeq:WP_012412826.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017307421.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_013193320.1
COORDINATES: similar to AA sequence:RefSeq:WP_009768070.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488459.1
COORDINATES: similar to AA sequence:RefSeq:WP_016863727.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655400.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412837.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412836.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412835.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412834.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412833.1
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_015214272.1
COORDINATES: similar to AA sequence:RefSeq:WP_009454344.1
COORDINATES: similar to AA sequence:RefSeq:WP_009454346.1
COORDINATES: protein motif:HMM:NF023276.2
COORDINATES: protein motif:HMM:NF037233.2
COORDINATES: similar to AA sequence:RefSeq:WP_012412831.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488368.1
COORDINATES: protein motif:HMM:NF024367.2
COORDINATES: similar to AA sequence:RefSeq:WP_015121326.1
COORDINATES: similar to AA sequence:RefSeq:WP_015173977.1
COORDINATES: similar to AA sequence:RefSeq:WP_017717921.1
COORDINATES: similar to AA sequence:RefSeq:WP_015182731.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015191290.1
COORDINATES: similar to AA sequence:RefSeq:WP_015146013.1