Nostoc edaphicum CCNP1411 plasmid pNe_3, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Nostoc edaphicum CCNP1411 from the Baltic Sea-A New Producer of Nostocyclopeptides
Submitted (10-JUN-2020) Department of Molecular Biology, University of Gdansk, Wita Stwosza 59, Gdansk, Pomorskie 80-308, Poland
REFSEQ INFORMATION: The reference sequence is identical to\nCP054695.1.\nBacteria and source DNA available from University of Gdansk\nInstitute of Oceanography Division of Marine Biotechnology al.\nMarszalka Jozefa Pilsudskiego 46 81-378 Gdynia.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-JUN-2020\nAssembly Method :: Flye v. 2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 163.6x\nSequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 22:31:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,061\nCDSs (total) :: 6,977\nGenes (coding) :: 6,695\nCDSs (with protein) :: 6,695\nGenes (RNA) :: 84\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 4\nPseudo Genes (total) :: 282\nCDSs (without protein) :: 282\nPseudo Genes (ambiguous residues) :: 0 of 282\nPseudo Genes (frameshifted) :: 121 of 282\nPseudo Genes (incomplete) :: 170 of 282\nPseudo Genes (internal stop) :: 44 of 282\nPseudo Genes (multiple problems) :: 46 of 282\nCRISPR Arrays :: 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_076611739.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017348641.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003065226.1
muconolactone Delta-isomerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018565394.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008197446.1
COORDINATES: similar to AA sequence:RefSeq:WP_015154219.1
COORDINATES: similar to AA sequence:RefSeq:WP_010075015.1
type 1 glutamine amidotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015154221.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612256.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015153954.1
COORDINATES: similar to AA sequence:RefSeq:WP_015154222.1
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016879149.1
COORDINATES: similar to AA sequence:RefSeq:WP_015139439.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015186416.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186415.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015186414.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017654894.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496216.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011316409.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948733.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015217645.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217644.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948728.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217642.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217641.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217640.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217639.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217638.1
COORDINATES: protein motif:HMM:NF017256.2
COORDINATES: similar to AA sequence:RefSeq:WP_015121917.1
formylglycine-generating enzyme family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015201526.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217637.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_015217636.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF039447.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015217621.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948826.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217620.1
COORDINATES: protein motif:HMM:NF033590.1
COORDINATES: protein motif:HMM:NF026057.2
transposase DNA-binding-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016875243.1
COORDINATES: similar to AA sequence:RefSeq:WP_007308951.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877667.1
COORDINATES: similar to AA sequence:RefSeq:WP_017748273.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611860.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015217554.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015217552.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217551.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217550.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217549.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217548.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217696.1
COORDINATES: protein motif:HMM:NF013755.2
COORDINATES: protein motif:HMM:NF012688.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017743764.1
COORDINATES: similar to AA sequence:RefSeq:WP_010997633.1
COORDINATES: similar to AA sequence:RefSeq:WP_013320222.1
COORDINATES: similar to AA sequence:RefSeq:WP_015138177.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015078275.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316419.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654889.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015155312.1
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: similar to AA sequence:RefSeq:WP_016865301.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117778.1
COORDINATES: similar to AA sequence:RefSeq:WP_017739797.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155307.1
COORDINATES: similar to AA sequence:RefSeq:WP_017739785.1
COORDINATES: similar to AA sequence:RefSeq:WP_017739787.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015154223.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011319522.1
COORDINATES: similar to AA sequence:RefSeq:WP_012166248.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011684201.1
COORDINATES: similar to AA sequence:RefSeq:WP_017315820.1
COORDINATES: similar to AA sequence:RefSeq:WP_015111483.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016877506.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015155302.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201624.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877105.1
COORDINATES: similar to AA sequence:RefSeq:WP_017739801.1
COORDINATES: similar to AA sequence:RefSeq:WP_017739800.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033921.0
GO:0016020 - membrane [Evidence IEA]; GO:0046930 - pore complex [Evidence IEA]
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0033212 - iron import into cell [Evidence IEA]
COORDINATES: protein motif:HMM:NF024753.2
COORDINATES: similar to AA sequence:RefSeq:WP_015153527.1
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF015255.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016876583.1
COORDINATES: similar to AA sequence:RefSeq:WP_007304605.1
reverse transcriptase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015201529.1
COORDINATES: protein motif:HMM:NF025039.2
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011999088.1
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: similar to AA sequence:RefSeq:WP_007183877.1
COORDINATES: similar to AA sequence:RefSeq:WP_016860546.1
COORDINATES: protein motif:HMM:NF024811.2