Nostoc edaphicum CCNP1411 plasmid pNe_2, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Nostoc edaphicum CCNP1411 from the Baltic Sea-A New Producer of Nostocyclopeptides
Submitted (10-JUN-2020) Department of Molecular Biology, University of Gdansk, Wita Stwosza 59, Gdansk, Pomorskie 80-308, Poland
REFSEQ INFORMATION: The reference sequence is identical to\nCP054694.1.\nBacteria and source DNA available from University of Gdansk\nInstitute of Oceanography Division of Marine Biotechnology al.\nMarszalka Jozefa Pilsudskiego 46 81-378 Gdynia.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-JUN-2020\nAssembly Method :: Flye v. 2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 163.6x\nSequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 22:31:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,061\nCDSs (total) :: 6,977\nGenes (coding) :: 6,695\nCDSs (with protein) :: 6,695\nGenes (RNA) :: 84\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 4\nPseudo Genes (total) :: 282\nCDSs (without protein) :: 282\nPseudo Genes (ambiguous residues) :: 0 of 282\nPseudo Genes (frameshifted) :: 121 of 282\nPseudo Genes (incomplete) :: 170 of 282\nPseudo Genes (internal stop) :: 44 of 282\nPseudo Genes (multiple problems) :: 46 of 282\nCRISPR Arrays :: 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012412899.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010994062.1
COORDINATES: similar to AA sequence:RefSeq:WP_015144086.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412902.1
COORDINATES: similar to AA sequence:RefSeq:WP_009455954.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
Spx/MgsR family RNA polymerase-binding regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_012412903.1
COORDINATES: similar to AA sequence:RefSeq:WP_006198071.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02619.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015201663.1
TIGR03986 family CRISPR-associated RAMP protein
COORDINATES: protein motif:HMM:TIGR03984.2
COORDINATES: similar to AA sequence:RefSeq:WP_017306836.1
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_015218456.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307771.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307345.1
CRISPR-associated ring nuclease Crn3/Csx3
COORDINATES: similar to AA sequence:RefSeq:WP_017307344.1
TIGR03985 family CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_016873406.1
COORDINATES: similar to AA sequence:RefSeq:WP_016873407.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015128931.1
COORDINATES: similar to AA sequence:RefSeq:WP_015113648.1
COORDINATES: similar to AA sequence:RefSeq:WP_015128933.1
COORDINATES: similar to AA sequence:RefSeq:WP_015113650.1
COORDINATES: similar to AA sequence:RefSeq:WP_015128935.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017315062.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015128937.1
COORDINATES: protein motif:HMM:TIGR04416.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_015128938.1
COORDINATES: similar to AA sequence:RefSeq:WP_010995637.1
COORDINATES: protein motif:HMM:NF025039.2
reverse transcriptase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012307.2
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF019984.2
group II intron maturase-specific domain-containing protein
COORDINATES: protein motif:HMM:NF013964.2
COORDINATES: similar to AA sequence:RefSeq:WP_015217670.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412847.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994087.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412850.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412851.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412852.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412855.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412856.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412857.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412858.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012412859.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412860.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412861.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412952.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412863.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412864.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412865.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412866.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994105.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412868.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217873.1
COORDINATES: similar to AA sequence:RefSeq:WP_010478845.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010994109.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412870.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994111.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412878.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655402.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412880.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412881.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412882.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994118.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994119.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412884.1
COORDINATES: similar to AA sequence:RefSeq:WP_017803756.1
COORDINATES: similar to AA sequence:RefSeq:WP_002775429.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006196579.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413366.1
COORDINATES: similar to AA sequence:RefSeq:WP_009543626.1
COORDINATES: similar to AA sequence:RefSeq:WP_009543625.1
COORDINATES: protein motif:HMM:NF024511.2
COORDINATES: similar to AA sequence:RefSeq:WP_015111322.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_015155389.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012412897.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412898.1