Nostoc edaphicum CCNP1411 plasmid pNe_1, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Nostocaceae; Nostoc.
Nostoc edaphicum CCNP1411 from the Baltic Sea-A New Producer of Nostocyclopeptides
Submitted (10-JUN-2020) Department of Molecular Biology, University of Gdansk, Wita Stwosza 59, Gdansk, Pomorskie 80-308, Poland
REFSEQ INFORMATION: The reference sequence is identical to\nCP054693.1.\nBacteria and source DNA available from University of Gdansk\nInstitute of Oceanography Division of Marine Biotechnology al.\nMarszalka Jozefa Pilsudskiego 46 81-378 Gdynia.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-JUN-2020\nAssembly Method :: Flye v. 2.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 163.6x\nSequencing Technology :: Oxford Nanopore GridION; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/19/2023 22:31:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,061\nCDSs (total) :: 6,977\nGenes (coding) :: 6,695\nCDSs (with protein) :: 6,695\nGenes (RNA) :: 84\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 4\nPseudo Genes (total) :: 282\nCDSs (without protein) :: 282\nPseudo Genes (ambiguous residues) :: 0 of 282\nPseudo Genes (frameshifted) :: 121 of 282\nPseudo Genes (incomplete) :: 170 of 282\nPseudo Genes (internal stop) :: 44 of 282\nPseudo Genes (multiple problems) :: 46 of 282\nCRISPR Arrays :: 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF024554.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_013193320.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012413367.1
COORDINATES: similar to AA sequence:RefSeq:WP_011766350.1
COORDINATES: protein motif:HMM:NF020290.2
GO:0016817 - hydrolase activity, acting on acid anhydrides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012413376.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217792.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155257.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010999534.1
COORDINATES: protein motif:HMM:NF024911.2
COORDINATES: similar to AA sequence:RefSeq:WP_003518804.1
COORDINATES: similar to AA sequence:RefSeq:WP_009454344.1
COORDINATES: similar to AA sequence:RefSeq:WP_010995207.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196010.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015179877.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF026867.2
polymorphic toxin type 24 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012412371.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201144.1
COORDINATES: similar to AA sequence:RefSeq:WP_015129988.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006195059.1
COORDINATES: similar to AA sequence:RefSeq:WP_019488173.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019488086.1
COORDINATES: similar to AA sequence:RefSeq:WP_017651352.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006277218.1
COORDINATES: protein motif:HMM:NF040412.1
COORDINATES: similar to AA sequence:RefSeq:WP_011611670.1