Streptomyces griseofuscus strain DSM 40191 plasmid pSGRIFU3, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
High-Quality Sequencing, Assembly, and Annotation of the Streptomyces griseofuscus DSM 40191 Genome
Microbiol Resour Announc 9 (47), e01100-20 (2020)
Submitted (03-APR-2020) Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Building 220, Kemitorvet 2800, Kongens Lyngby, Hovedstaden 2800, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP051009.1.\nAnnotated using prokka_raw 1.14.6 from\nhttps://github.com/tseemann/prokka.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 06-MAY-2019\nAssembly Method :: Flye v. 2.4.1-geb89c9e; Unicycler_polish\n v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 144.0x\nSequencing Technology :: PacBio RSII; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/24/2023 08:51:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,255\nCDSs (total) :: 8,147\nGenes (coding) :: 7,881\nCDSs (with protein) :: 7,881\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 3\nPseudo Genes (total) :: 275\nCDSs (without protein) :: 266\nPseudo Genes (ambiguous residues) :: 0 of 275\nPseudo Genes (frameshifted) :: 108 of 275\nPseudo Genes (incomplete) :: 208 of 275\nPseudo Genes (internal stop) :: 28 of 275\nPseudo Genes (multiple problems) :: 73 of 275\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Streptomyces griseofuscus
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018522993.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007447151.1
COORDINATES: similar to AA sequence:RefSeq:WP_008749748.1
COORDINATES: similar to AA sequence:RefSeq:WP_014176311.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019075952.1
COORDINATES: similar to AA sequence:RefSeq:WP_010471337.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011109669.1
COORDINATES: similar to AA sequence:RefSeq:WP_016639756.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828477.1
COORDINATES: similar to AA sequence:RefSeq:WP_004994192.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019435102.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009998362.1
COORDINATES: similar to AA sequence:RefSeq:WP_014142973.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009998361.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998360.1
GO:0006629 - lipid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012836356.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007447152.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_014677423.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569508.1
COORDINATES: similar to AA sequence:RefSeq:WP_020138516.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109685.1
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019074364.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329429.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523902.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449488.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677463.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677464.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979068.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109692.1
COORDINATES: similar to AA sequence:RefSeq:WP_007505220.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329440.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158435.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039398.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449475.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677479.1
COORDINATES: similar to AA sequence:RefSeq:WP_010064734.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109704.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677482.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677483.1
COORDINATES: similar to AA sequence:RefSeq:WP_011039406.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329452.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043611.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677500.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677501.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677502.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569239.1
COORDINATES: similar to AA sequence:RefSeq:WP_019074396.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742151.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677508.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677509.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449458.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677511.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677512.1
COORDINATES: similar to AA sequence:RefSeq:WP_015449455.1
COORDINATES: similar to AA sequence:RefSeq:WP_003979027.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677516.1
COORDINATES: similar to AA sequence:RefSeq:WP_014668679.1
COORDINATES: similar to AA sequence:RefSeq:WP_010279902.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018106296.1
COORDINATES: similar to AA sequence:RefSeq:WP_010982317.1
GO:0045027 - DNA end binding [Evidence IEA]
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004921040.1
COORDINATES: similar to AA sequence:RefSeq:WP_007379141.1
COORDINATES: similar to AA sequence:RefSeq:WP_018548858.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523464.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523465.1
COORDINATES: similar to AA sequence:RefSeq:WP_019521097.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523477.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109734.1
COORDINATES: similar to AA sequence:RefSeq:WP_014670178.1
COORDINATES: similar to AA sequence:RefSeq:WP_003980079.1
COORDINATES: similar to AA sequence:RefSeq:WP_006132468.1
COORDINATES: similar to AA sequence:RefSeq:WP_020124381.1
COORDINATES: similar to AA sequence:RefSeq:WP_006129974.1
COORDINATES: similar to AA sequence:RefSeq:WP_015663162.1
COORDINATES: similar to AA sequence:RefSeq:WP_008749761.1
COORDINATES: similar to AA sequence:RefSeq:WP_012998015.1
COORDINATES: similar to AA sequence:RefSeq:WP_005444902.1
COORDINATES: similar to AA sequence:RefSeq:WP_011109749.1
COORDINATES: similar to AA sequence:RefSeq:WP_009998270.1