Streptomyces griseofuscus strain DSM 40191 plasmid pSGRIFU2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
High-Quality Sequencing, Assembly, and Annotation of the Streptomyces griseofuscus DSM 40191 Genome
Microbiol Resour Announc 9 (47), e01100-20 (2020)
Submitted (03-APR-2020) Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Building 220, Kemitorvet 2800, Kongens Lyngby, Hovedstaden 2800, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP051008.1.\nAnnotated using prokka_raw 1.14.6 from\nhttps://github.com/tseemann/prokka.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 06-MAY-2019\nAssembly Method :: Flye v. 2.4.1-geb89c9e; Unicycler_polish\n v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 144.0x\nSequencing Technology :: PacBio RSII; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/24/2023 08:51:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,255\nCDSs (total) :: 8,147\nGenes (coding) :: 7,881\nCDSs (with protein) :: 7,881\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 3\nPseudo Genes (total) :: 275\nCDSs (without protein) :: 266\nPseudo Genes (ambiguous residues) :: 0 of 275\nPseudo Genes (frameshifted) :: 108 of 275\nPseudo Genes (incomplete) :: 208 of 275\nPseudo Genes (internal stop) :: 28 of 275\nPseudo Genes (multiple problems) :: 73 of 275\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Streptomyces griseofuscus
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF019884.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014677441.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019329412.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523893.1
COORDINATES: similar to AA sequence:RefSeq:WP_015033320.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569228.1
COORDINATES: protein motif:HMM:NF017542.2
GO:0006260 - DNA replication [Evidence IEA]; GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010471337.1
COORDINATES: similar to AA sequence:RefSeq:WP_010474044.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521703.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521702.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018554937.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830723.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003954243.1
GO:0008251 - tRNA-specific adenosine deaminase activity [Evidence IEA]
GO:0002100 - tRNA wobble adenosine to inosine editing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018680579.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011109691.1
COORDINATES: protein motif:HMM:NF012610.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007830733.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329452.1
COORDINATES: similar to AA sequence:RefSeq:WP_010988911.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329461.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329462.1
COORDINATES: similar to AA sequence:RefSeq:WP_003949823.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742151.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569233.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569232.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523013.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830774.1
COORDINATES: similar to AA sequence:RefSeq:WP_019329467.1
COORDINATES: similar to AA sequence:RefSeq:WP_016889552.1
COORDINATES: similar to AA sequence:RefSeq:WP_018523008.1
COORDINATES: protein motif:HMM:NF020704.2
COORDINATES: similar to AA sequence:RefSeq:WP_017565203.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106142.1
COORDINATES: similar to AA sequence:RefSeq:WP_015438891.1
COORDINATES: similar to AA sequence:RefSeq:WP_014043709.1
COORDINATES: similar to AA sequence:RefSeq:WP_005322170.1
COORDINATES: similar to AA sequence:RefSeq:WP_010985783.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
phenylacetic acid degradation protein PaaN