Streptomyces griseofuscus strain DSM 40191 plasmid pSGRIFU1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
High-Quality Sequencing, Assembly, and Annotation of the Streptomyces griseofuscus DSM 40191 Genome
Microbiol Resour Announc 9 (47), e01100-20 (2020)
Submitted (03-APR-2020) Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Building 220, Kemitorvet 2800, Kongens Lyngby, Hovedstaden 2800, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP051007.1.\nAnnotated using prokka_raw 1.14.6 from\nhttps://github.com/tseemann/prokka.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 06-MAY-2019\nAssembly Method :: Flye v. 2.4.1-geb89c9e; Unicycler_polish\n v. 0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 144.0x\nSequencing Technology :: PacBio RSII; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/24/2023 08:51:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,255\nCDSs (total) :: 8,147\nGenes (coding) :: 7,881\nCDSs (with protein) :: 7,881\nGenes (RNA) :: 108\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 84\nncRNAs :: 3\nPseudo Genes (total) :: 275\nCDSs (without protein) :: 266\nPseudo Genes (ambiguous residues) :: 0 of 275\nPseudo Genes (frameshifted) :: 108 of 275\nPseudo Genes (incomplete) :: 208 of 275\nPseudo Genes (internal stop) :: 28 of 275\nPseudo Genes (multiple problems) :: 73 of 275\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Streptomyces griseofuscus
COORDINATES: similar to AA sequence:RefSeq:WP_018104810.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018534037.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018540612.1
COORDINATES: similar to AA sequence:RefSeq:WP_020631257.1
pyrroloquinoline quinone biosynthesis protein PqqB
COORDINATES: similar to AA sequence:RefSeq:WP_016697969.1
GO:0018149 - peptide cross-linking [Evidence IEA]; GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis protein PqqE
COORDINATES: similar to AA sequence:RefSeq:WP_009079179.1
GO:0048038 - quinone binding [Evidence IEA]
GO:0018189 - pyrroloquinoline quinone biosynthetic process [Evidence IEA]
pyrroloquinoline quinone biosynthesis peptide chaperone PqqD
COORDINATES: similar to AA sequence:RefSeq:WP_015098208.1
COORDINATES: protein motif:HMM:TIGR02107.1
GO:0003824 - catalytic activity [Evidence IEA]
pyrroloquinoline quinone precursor peptide PqqA
COORDINATES: similar to AA sequence:RefSeq:WP_014668983.1
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_011397300.1
COORDINATES: protein motif:HMM:NF012337.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011397301.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011397302.1
beta-ketoacyl synthase N-terminal-like domain-containing protein
COORDINATES: protein motif:HMM:NF026115.2
polyketide synthase dehydratase domain-containing protein
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: protein motif:HMM:TIGR01686.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_015805032.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015610889.1
COORDINATES: similar to AA sequence:RefSeq:WP_019854716.1
COORDINATES: similar to AA sequence:RefSeq:WP_005158094.1
COORDINATES: protein motif:HMM:NF014414.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004562643.1
COORDINATES: similar to AA sequence:RefSeq:WP_017594889.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017594891.1
activator-dependent family glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009950404.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016823071.1
COORDINATES: similar to AA sequence:RefSeq:WP_008743411.1
COORDINATES: protein motif:HMM:NF012901.2
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: protein motif:HMM:NF012296.2
COORDINATES: similar to AA sequence:RefSeq:WP_018819770.1
dTDP-4-dehydro-6-deoxyglucose aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008741987.1
dTDP-4-amino-4,6-dideoxy-D-glucose ammonia-lyase
COORDINATES: similar to AA sequence:RefSeq:WP_017947386.1
COORDINATES: similar to AA sequence:RefSeq:WP_014445171.1
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006545488.1
COORDINATES: similar to AA sequence:RefSeq:WP_014045774.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019330331.1
TlrC/CarA/OleB/SrmB family ABC-F type ribosomal protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_015506844.1
TylF/MycF/NovP-related O-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008748190.1
dTDP-4-dehydrorhamnose 3,5-epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018105956.1
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020141452.1
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
methylenetetrahydrofolate reductase [NAD(P)H]
COORDINATES: similar to AA sequence:RefSeq:WP_014671704.1
GO:0008705 - methionine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015625208.1
COORDINATES: similar to AA sequence:RefSeq:WP_003956418.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018511405.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019611586.1
NDP-hexose 2,3-dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004994456.1
AfsR/SARP family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018106303.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_018106304.1
COORDINATES: protein motif:HMM:NF036450.2
COORDINATES: similar to AA sequence:RefSeq:WP_020207396.1
COORDINATES: similar to AA sequence:RefSeq:WP_020130972.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106307.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106308.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017588796.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106311.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106312.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106313.1
beta-ketoacyl-[acyl-carrier-protein] synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018106314.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007268976.1
COORDINATES: similar to AA sequence:RefSeq:WP_018568309.1
COORDINATES: protein motif:HMM:NF041196.1
ScbR family autoregulator-binding transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_007268975.1
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_018893141.1
transketolase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006541973.1
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_019355778.1
COORDINATES: similar to AA sequence:RefSeq:WP_006608009.1
COORDINATES: similar to AA sequence:RefSeq:WP_012999107.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828665.1
COORDINATES: similar to AA sequence:RefSeq:WP_011208825.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106284.1
ScbA/BarX family gamma-butyrolactone biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_013222578.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158408.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521701.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014673649.1
COORDINATES: similar to AA sequence:RefSeq:WP_018547517.1
TetR/AcrR family transcriptional regulator
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_018554492.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106294.1
COORDINATES: similar to AA sequence:RefSeq:WP_007387459.1
COORDINATES: similar to AA sequence:RefSeq:WP_004994341.1
COORDINATES: similar to AA sequence:RefSeq:WP_018569294.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019979985.1
COORDINATES: protein motif:HMM:NF028169.2
COORDINATES: similar to AA sequence:RefSeq:WP_016471667.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006374535.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019330797.1
COORDINATES: protein motif:HMM:NF012517.2
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_014670295.1
COORDINATES: similar to AA sequence:RefSeq:WP_014670294.1
phytoene/squalene synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014670293.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014670292.1
COORDINATES: similar to AA sequence:RefSeq:WP_014670291.1
COORDINATES: similar to AA sequence:RefSeq:WP_012998484.1
COORDINATES: similar to AA sequence:RefSeq:WP_019525789.1
COORDINATES: similar to AA sequence:RefSeq:WP_014669630.1
COORDINATES: similar to AA sequence:RefSeq:WP_020420467.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020124381.1
COORDINATES: similar to AA sequence:RefSeq:WP_014628754.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016471615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006379048.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_086558177.1
COORDINATES: similar to AA sequence:RefSeq:WP_003977840.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005477235.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011558666.1
COORDINATES: similar to AA sequence:RefSeq:WP_019359492.1
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: similar to AA sequence:RefSeq:WP_014669705.1
COORDINATES: similar to AA sequence:RefSeq:WP_018566596.1
COORDINATES: protein motif:HMM:NF013672.2
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007386431.1
PP2C family protein-serine/threonine phosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_086558251.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015606852.1
COORDINATES: protein motif:HMM:NF012497.2
COORDINATES: similar to AA sequence:RefSeq:WP_086896509.1
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019075952.1
COORDINATES: similar to AA sequence:RefSeq:WP_015493161.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677141.1
COORDINATES: similar to AA sequence:RefSeq:WP_014047552.1
COORDINATES: similar to AA sequence:RefSeq:WP_007446959.1
COORDINATES: similar to AA sequence:RefSeq:WP_017565203.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_014677562.1
COORDINATES: similar to AA sequence:RefSeq:WP_005476988.1