Klebsiella quasipneumoniae strain KqPF26 plasmid p2, complete sequence.
type: Entry
definition: Klebsiella quasipneumoniae strain KqPF26 plasmid p2, complete sequence.
sequence version: NZ_CP065840.1
sequence date: 2022-11-09
sequence: sequence
division: CON
label: NZ_CP065840.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN17016750
keyword: RefSeq
source: Klebsiella quasipneumoniae
organism: Klebsiella quasipneumoniae
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP065840.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v.0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 271x, 39x\nSequencing Technology :: Illumina NextSeq, ONT MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/09/2022 04:20:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,237\nCDSs (total) :: 5,118\nGenes (coding) :: 5,035\nCDSs (with protein) :: 5,035\nGenes (RNA) :: 119\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 11\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 42 of 83\nPseudo Genes (incomplete) :: 39 of 83\nPseudo Genes (internal stop) :: 21 of 83\nPseudo Genes (multiple problems) :: 16 of 83\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 3478
topology: circular
so has quality: SO_0000988
location: 1..3478
location: region:1-3478:1
RO_0002162: 1463165

NZ_CP065840
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN17016750
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequences of Six Uropathogenic Klebsiella pneumoniae Strains Isolated from Postmenopausal Women with Recurrent Urinary Tract Infection (rUTI)
author: Venkitapathi, S.
author: Sharon, B.M.
author: Ratna, T.A.
author: Arute, A.P.
author: Zimmern, P.E.
author: De Nisco, N.J.
journal: Unpublished

2
title: Direct Submission
author: Sharon, B.M.
author: Venkitapathi, S.
author: Ratna, T.A.
author: Arute, A.P.
author: Zimmern, P.E.
author: De Nisco, N.J.
journal: Submitted (07-DEC-2020) Biological Sciences, University of Texas at Dallas, 800 W Campbell Road, Richardson, TX 75080, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3478:1
position: 3478
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-3478:1:source
so part of: sequence
organism: Klebsiella quasipneumoniae
mol type: genomic DNA
strain: KqPF26
isolation source: urine
host: Homo sapiens
plasmid: p2
country: USA: Dallas, Texas
lat lon: 32.77 N 96.79 W
collection date: 2018-09
collected by: UT Southwestern Medical Center/ UT Dallas

1463165
type: Taxonomy
SIO_000068: taxonomy

I8N75_RS26065
type: Gene
subclass of: SO_0000704
RO_0002162: 1463165
locus tag: I8N75_RS26065
old locus tag: I8N75_26065
so part of: sequence
location: complement(180..581)
location: region:180-581:-1
so has part: feature:180-581:-1:exon
subclass of: SO_0000010

64298051
type: Gene
SIO_000068: ncbigene

position:180:-1
position: 180
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:581:-1
position: 581
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:180-581:-1:exon

I8N75_RS26065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1463165
locus tag: I8N75_RS26065
old locus tag: I8N75_26065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009310048.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MARVSISEAARLTGKSRTTLHRLIKAGDLSTCSGERNAKMVDTSELLRVFGSFEQPKGEHLSGQVSEQRDTAFADQNEQVIRHLKQEIEHLNTLLLSKDSHIDSLKQAMLLLENHQAKLTGSPAPWWKFWKKS
SIO_010081: I8N75_RS26065
subclass of: SO_0000673
so part of: I8N75_RS26065
location: complement(180..581)
location: region:180-581:-1
so has part: feature:180-581:-1:exon

WP_198974790.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:180-581:-1:exon

I8N75_RS26070
type: Gene
subclass of: SO_0000704
RO_0002162: 1463165
locus tag: I8N75_RS26070
old locus tag: I8N75_26070
so part of: sequence
location: complement(581..772)
location: region:581-772:-1
so has part: feature:581-772:-1:exon
subclass of: SO_0000010

64298052
type: Gene
SIO_000068: ncbigene

position:772:-1
position: 772
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:581-772:-1:exon

I8N75_RS26070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1463165
locus tag: I8N75_RS26070
old locus tag: I8N75_26070
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000166328.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Rop family plasmid primer RNA-binding protein
translation: MTKQQKTALNMAKFIQHQSLLLLEKLNELELDAEADLCEKLHDDAEHLFRTLSSRLDALQDGY
SIO_010081: I8N75_RS26070
subclass of: SO_0000673
so part of: I8N75_RS26070
location: complement(581..772)
location: region:581-772:-1
so has part: feature:581-772:-1:exon

WP_087497919.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:581-772:-1:exon

I8N75_RS26290
type: Gene
subclass of: SO_0000704
RO_0002162: 1463165
locus tag: I8N75_RS26290
pseudo: true
so part of: sequence
location: 1177..1310
location: region:1177-1310:1
so has part: feature:1177-1310:1:exon
subclass of: SO_0000010

68611052
type: Gene
SIO_000068: ncbigene

position:1177:1
position: 1177
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1310:1
position: 1310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1177-1310:1:exon

I8N75_RS26290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1463165
locus tag: I8N75_RS26290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001326446.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: replication initiation protein
SIO_010081: I8N75_RS26290
subclass of: SO_0000673
so part of: I8N75_RS26290
location: 1177..1310
location: region:1177-1310:1
so has part: feature:1177-1310:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:1177-1310:1:exon

I8N75_RS26075
type: Gene
subclass of: SO_0000704
RO_0002162: 1463165
gene: mazF
locus tag: I8N75_RS26075
old locus tag: I8N75_26075
so part of: sequence
location: complement(1441..1779)
location: region:1441-1779:-1
so has part: feature:1441-1779:-1:exon
subclass of: SO_0000010

64298053
type: Gene
SIO_000068: ncbigene

position:1441:-1
position: 1441
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1779:-1
position: 1779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1441-1779:-1:exon

I8N75_RS26075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1463165
gene: mazF
locus tag: I8N75_RS26075
old locus tag: I8N75_26075
EC number: 3.1.27.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017449239.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: endoribonuclease MazF
translation: MTTYCPARGDVILLDFNPQSGHEQAGKRPALVVSDDLFNQVTGFAVVCPITNQIKGYPFEVPVDGTTKTTGVILADQVKSLDWKARAARTVDSVSGETVTTVVDMVSKIIKA
SIO_010081: I8N75_RS26075
subclass of: SO_0000673
so part of: I8N75_RS26075
location: complement(1441..1779)
location: region:1441-1779:-1
so has part: feature:1441-1779:-1:exon

WP_011977836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1441-1779:-1:exon

I8N75_RS26080
type: Gene
subclass of: SO_0000704
RO_0002162: 1463165
locus tag: I8N75_RS26080
old locus tag: I8N75_26080
so part of: sequence
location: complement(1776..2006)
location: region:1776-2006:-1
so has part: feature:1776-2006:-1:exon
subclass of: SO_0000010

64298054
type: Gene
SIO_000068: ncbigene

position:1776:-1
position: 1776
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2006:-1
position: 2006
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1776-2006:-1:exon

I8N75_RS26080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1463165
locus tag: I8N75_RS26080
old locus tag: I8N75_26080
inference: COORDINATES: protein motif:HMM:NF015947.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MTTAIGKWGNGAALRIPQPFMKQLGLSIGDVVNFRVTERDLVITKAGPTLEELLGQCTAENRHHEYLCDSQGKEML
SIO_010081: I8N75_RS26080
subclass of: SO_0000673
so part of: I8N75_RS26080
location: complement(1776..2006)
location: region:1776-2006:-1
so has part: feature:1776-2006:-1:exon

WP_011977835.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1776-2006:-1:exon

I8N75_RS26085
type: Gene
subclass of: SO_0000704
RO_0002162: 1463165
locus tag: I8N75_RS26085
old locus tag: I8N75_26085
so part of: sequence
location: 2198..2875
location: region:2198-2875:1
so has part: feature:2198-2875:1:exon
subclass of: SO_0000010

64298055
type: Gene
SIO_000068: ncbigene

position:2198:1
position: 2198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2875:1
position: 2875
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2198-2875:1:exon

I8N75_RS26085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1463165
locus tag: I8N75_RS26085
old locus tag: I8N75_26085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011977834.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MIYKEKKINRNQIPVILASRWGYSILEEAGWTTVPNLLLEKQMVLELSNTEMLLLIHLISFIHFADTPAFPSISTLAGRINQHPRTVQRTINKLISKGFLKRKIRAKSVNDKGLSNLYSFEPLIEKLLISISNNKGQYEEPQKEQGERDLKTVDQLVRIAAAGGGLRLSASTKTVDQLVRIAAAAGNSITPNKAKLVLFDLESKTVDELVRIAAAGKGCVLFELE
SIO_010081: I8N75_RS26085
subclass of: SO_0000673
so part of: I8N75_RS26085
location: 2198..2875
location: region:2198-2875:1
so has part: feature:2198-2875:1:exon

WP_225372707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2198-2875:1:exon