Klebsiella quasipneumoniae strain KqPF26 plasmid p2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
Complete Genome Sequences of Six Uropathogenic Klebsiella pneumoniae Strains Isolated from Postmenopausal Women with Recurrent Urinary Tract Infection (rUTI)
Submitted (07-DEC-2020) Biological Sciences, University of Texas at Dallas, 800 W Campbell Road, Richardson, TX 75080, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP065840.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v.0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 271x, 39x\nSequencing Technology :: Illumina NextSeq, ONT MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/09/2022 04:20:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,237\nCDSs (total) :: 5,118\nGenes (coding) :: 5,035\nCDSs (with protein) :: 5,035\nGenes (RNA) :: 119\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 11\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 42 of 83\nPseudo Genes (incomplete) :: 39 of 83\nPseudo Genes (internal stop) :: 21 of 83\nPseudo Genes (multiple problems) :: 16 of 83\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
UT Southwestern Medical Center/ UT Dallas
COORDINATES: similar to AA sequence:RefSeq:WP_009310048.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000166328.1
Rop family plasmid primer RNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_001326446.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017449239.1
COORDINATES: protein motif:HMM:NF015947.2
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011977834.1