Klebsiella quasipneumoniae strain KqPF26 plasmid p1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
Complete Genome Sequences of Six Uropathogenic Klebsiella pneumoniae Strains Isolated from Postmenopausal Women with Recurrent Urinary Tract Infection (rUTI)
Submitted (07-DEC-2020) Biological Sciences, University of Texas at Dallas, 800 W Campbell Road, Richardson, TX 75080, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP065839.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. v.0.4.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 271x, 39x\nSequencing Technology :: Illumina NextSeq, ONT MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/09/2022 04:20:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,237\nCDSs (total) :: 5,118\nGenes (coding) :: 5,035\nCDSs (with protein) :: 5,035\nGenes (RNA) :: 119\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 83\nncRNAs :: 11\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 42 of 83\nPseudo Genes (incomplete) :: 39 of 83\nPseudo Genes (internal stop) :: 21 of 83\nPseudo Genes (multiple problems) :: 16 of 83\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
UT Southwestern Medical Center/ UT Dallas
COORDINATES: similar to AA sequence:RefSeq:WP_017900946.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_012540156.1
COORDINATES: similar to AA sequence:RefSeq:WP_001532579.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611102.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001372261.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000647571.1
COORDINATES: similar to AA sequence:RefSeq:WP_000790485.1
COORDINATES: similar to AA sequence:RefSeq:WP_003032875.1
copper/silver sensor histidine kinase SilS
COORDINATES: similar to AA sequence:RefSeq:WP_001572351.1
copper/silver response regulator transcription factor SilR
COORDINATES: similar to AA sequence:RefSeq:WP_001572989.1
Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC
COORDINATES: similar to AA sequence:RefSeq:WP_009654303.1
COORDINATES: similar to AA sequence:RefSeq:WP_017146627.1
Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB
COORDINATES: similar to AA sequence:RefSeq:WP_011711636.1
Cu(+)/Ag(+) efflux RND transporter permease subunit SilA
COORDINATES: similar to AA sequence:RefSeq:WP_002436620.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322814.1
COORDINATES: similar to AA sequence:RefSeq:WP_000843499.1
COORDINATES: similar to AA sequence:RefSeq:WP_002436617.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004388333.1
COORDINATES: similar to AA sequence:RefSeq:WP_001480786.1
COORDINATES: similar to AA sequence:RefSeq:WP_001378118.1
copper resistance outer membrane transporter PcoB
COORDINATES: similar to AA sequence:RefSeq:WP_004098941.1
copper resistance system metallochaperone PcoC
COORDINATES: similar to AA sequence:RefSeq:WP_004098940.1
copper resistance inner membrane protein PcoD
transcriptional regulator responding to pcoS and pcoS*
COORDINATES: similar to AA sequence:RefSeq:WP_020239536.1
copper response regulator transcription factor PcoR
COORDINATES: similar to AA sequence:RefSeq:WP_001211179.1
copper resistance membrane spanning protein PcoS
COORDINATES: similar to AA sequence:RefSeq:WP_000723069.1
copper resistance system metallochaperone PcoE
COORDINATES: similar to AA sequence:RefSeq:WP_004152086.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004118348.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_004966400.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_004201219.1
IS66-like element ISKpn24 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000034287.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
arsenic metallochaperone ArsD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_131199602.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004152096.1
COORDINATES: similar to AA sequence:RefSeq:NP_417960.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
glutaredoxin-dependent arsenate reductase
COORDINATES: similar to AA sequence:RefSeq:NP_312401.1
arsenite efflux transporter membrane subunit ArsB
COORDINATES: similar to AA sequence:RefSeq:WP_004152099.1
arsenite efflux transporter ATPase subunit ArsA
COORDINATES: similar to AA sequence:RefSeq:WP_000855179.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_004152101.1
As(III)-sensing metalloregulatory transcriptional repressor ArsR
COORDINATES: similar to AA sequence:RefSeq:WP_004200907.1
COORDINATES: similar to AA sequence:RefSeq:WP_004200905.1
COORDINATES: similar to AA sequence:RefSeq:WP_020805591.1
COORDINATES: similar to AA sequence:RefSeq:WP_002208622.1
COORDINATES: similar to AA sequence:RefSeq:WP_019725034.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213599.1
COORDINATES: similar to AA sequence:RefSeq:WP_012540079.1
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013986.2
BadF/BadG/BcrA/BcrD ATPase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017537159.1
COORDINATES: similar to AA sequence:RefSeq:WP_016947505.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016947506.1
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020803681.1
COORDINATES: similar to AA sequence:RefSeq:WP_003031956.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003031955.1
COORDINATES: similar to AA sequence:RefSeq:WP_003031954.1
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016947508.1
COORDINATES: similar to AA sequence:RefSeq:WP_020803678.1
COORDINATES: similar to AA sequence:RefSeq:WP_009636324.1
COORDINATES: similar to AA sequence:RefSeq:WP_014605854.1
COORDINATES: similar to AA sequence:RefSeq:WP_014605855.1
COORDINATES: similar to AA sequence:RefSeq:WP_014605856.1
COORDINATES: similar to AA sequence:RefSeq:WP_014605857.1
COORDINATES: similar to AA sequence:RefSeq:WP_010671732.1
COORDINATES: protein motif:HMM:NF013676.2
COORDINATES: similar to AA sequence:RefSeq:WP_000734115.1
COORDINATES: similar to AA sequence:RefSeq:WP_000090196.1
COORDINATES: similar to AA sequence:RefSeq:WP_000872613.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_016240531.1
COORDINATES: similar to AA sequence:RefSeq:WP_001194072.1
COORDINATES: similar to AA sequence:RefSeq:WP_000039982.1
COORDINATES: similar to AA sequence:RefSeq:WP_002431133.1
COORDINATES: similar to AA sequence:RefSeq:WP_016246488.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008502230.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000108588.1
COORDINATES: similar to AA sequence:RefSeq:WP_008502231.1
COORDINATES: similar to AA sequence:RefSeq:WP_011846847.1
COORDINATES: similar to AA sequence:RefSeq:WP_001697689.1
COORDINATES: similar to AA sequence:RefSeq:NP_460027.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001566974.1
GO:0008832 - dGTPase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001404086.1
COORDINATES: similar to AA sequence:RefSeq:WP_016235606.1
COORDINATES: similar to AA sequence:RefSeq:WP_001554382.1
GO:0016846 - carbon-sulfur lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005229675.1
GO:0006276 - plasmid maintenance [Evidence IEA]
incFII family plasmid replication initiator RepA
COORDINATES: similar to AA sequence:RefSeq:WP_006122288.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152294.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229681.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152296.1
COORDINATES: similar to AA sequence:RefSeq:WP_004178051.1
COORDINATES: similar to AA sequence:RefSeq:WP_004178052.1
COORDINATES: similar to AA sequence:RefSeq:WP_009309884.1
COORDINATES: similar to AA sequence:RefSeq:WP_009309883.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229686.1
type-F conjugative transfer system pilin acetylase TraX
COORDINATES: similar to AA sequence:RefSeq:YP_005229687.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_004152630.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:YP_005229690.1
conjugal transfer complement resistance protein TraT
COORDINATES: similar to AA sequence:RefSeq:WP_004153030.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229692.1
conjugal transfer mating-pair stabilization protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_004159274.1
conjugal transfer pilus assembly protein TraH
COORDINATES: similar to AA sequence:RefSeq:WP_019725059.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152688.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:YP_005229696.1
type-F conjugative transfer system pilin chaperone TraQ
COORDINATES: similar to AA sequence:RefSeq:YP_005229697.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_016529362.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152683.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229701.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:YP_005229702.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_004150659.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_020314628.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:YP_005229706.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:YP_005229707.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229708.1
COORDINATES: similar to AA sequence:RefSeq:WP_020323516.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229710.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229711.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229712.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152596.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152597.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229714.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_012881130.1
F-type conjugal transfer pilus assembly protein TraB
COORDINATES: similar to AA sequence:RefSeq:YP_005229716.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:YP_005229717.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:YP_005229718.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:YP_005229719.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_004152495.1
COORDINATES: similar to AA sequence:RefSeq:WP_004178061.1
transcriptional regulator TraJ family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004178062.1
conjugal transfer relaxosome DNA-binding protein TraM
COORDINATES: similar to AA sequence:RefSeq:WP_009309864.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000556933.1
COORDINATES: similar to AA sequence:RefSeq:WP_000080850.1
COORDINATES: similar to AA sequence:RefSeq:NP_052652.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152749.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197740.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229741.1
type I toxin-antitoxin system Hok family toxin
COORDINATES: protein motif:HMM:NF036604.2
COORDINATES: similar to AA sequence:RefSeq:YP_005229743.1
COORDINATES: similar to AA sequence:RefSeq:WP_020316901.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229745.1
COORDINATES: similar to AA sequence:RefSeq:WP_000117197.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:YP_005229747.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229748.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001087967.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229755.1
COORDINATES: similar to AA sequence:RefSeq:WP_020317118.1
COORDINATES: similar to AA sequence:RefSeq:WP_001198918.1
COORDINATES: similar to AA sequence:RefSeq:WP_020317122.1
COORDINATES: similar to AA sequence:RefSeq:WP_004178083.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004152715.1
COORDINATES: similar to AA sequence:RefSeq:WP_004182043.1
COORDINATES: similar to AA sequence:RefSeq:WP_008325193.1
COORDINATES: similar to AA sequence:RefSeq:WP_000817038.1
ParB/RepB/Spo0J family plasmid partition protein
COORDINATES: similar to AA sequence:RefSeq:NP_052640.1