Mycolicibacterium boenickei strain JCM 15653 plasmid pJCM15653, complete sequence.
Mycolicibacterium boenickei (Mycobacterium boenickei)
Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycolicibacterium.
Comprehensive subspecies identification of 175 nontuberculous mycobacteria species based on 7547 genomic profiles
Submitted (05-FEB-2020) Contact:Yuki Matsumoto Research Institute for Microbial Diseases, Osaka University, Department of infection metagenomics; Yamadaoka 3-1, Suita, Osaka 565-0871, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP022580.1.\nAnnotated at DFAST https://dfast.nig.ac.jp/\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.7\nGenome Coverage :: 165x\nSequencing Technology :: Oxford Nanopore Technologies MinION;\n Illumina HiSeq2500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/15/2022 00:23:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,351\nCDSs (total) :: 6,291\nGenes (coding) :: 6,234\nCDSs (with protein) :: 6,234\nGenes (RNA) :: 60\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 3\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 27 of 57\nPseudo Genes (incomplete) :: 37 of 57\nPseudo Genes (internal stop) :: 2 of 57\nPseudo Genes (multiple problems) :: 8 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Mycolicibacterium boenickei
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014805399.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_006244020.1
COORDINATES: similar to AA sequence:RefSeq:WP_016892183.1
COORDINATES: similar to AA sequence:RefSeq:WP_019737021.1
COORDINATES: similar to AA sequence:RefSeq:WP_006243939.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896343.1
COORDINATES: similar to AA sequence:RefSeq:WP_011896304.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007172307.1
conjugative relaxase TrwC/TraI family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011896331.1