Serpentinimonas maccroryi strain B1 plasmid pSMB1, complete sequence.
type: Entry
definition: Serpentinimonas maccroryi strain B1 plasmid pSMB1, complete sequence.
sequence version: NZ_AP014570.1
sequence date: 2023-03-12
sequence: sequence
division: CON
label: NZ_AP014570.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00000326
keyword: RefSeq
source: Serpentinimonas maccroryi
organism: Serpentinimonas maccroryi
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Comamonadaceae; Serpentinimonas.
reference: 1
references: 24845058
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP014570.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet; CLC GUI v. 6.0.1\nGenome Coverage :: 100x\nSequencing Technology :: Illumina Hiseq 2000\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 14:52:45\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,444\nCDSs (total) :: 2,391\nGenes (coding) :: 2,348\nCDSs (with protein) :: 2,348\nGenes (RNA) :: 53\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 43\nCDSs (without protein) :: 43\nPseudo Genes (ambiguous residues) :: 0 of 43\nPseudo Genes (frameshifted) :: 9 of 43\nPseudo Genes (incomplete) :: 38 of 43\nPseudo Genes (internal stop) :: 3 of 43\nPseudo Genes (multiple problems) :: 7 of 43\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16368
topology: circular
so has quality: SO_0000988
location: 1..16368
location: region:1-16368:1
RO_0002162: 1458426

NZ_AP014570
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00000326
type: BioSample
SIO_000068: biosample

1
title: Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site
author: Suzuki, S.
author: Kuenen, J.G.
author: Schipper, K.
author: van der Velde, S.
author: Ishii, S.
author: Wu, A.
author: Sorokin, D.Y.
author: Tenney, A.
author: Meng, X.
author: Morrill, P.L.
author: Kamagata, Y.
author: Muyzer, G.
author: Nealson, K.H.
journal: Nat Commun 5, 3900 (2014)
pubmed: 24845058
comments: DOI:10.1038/ncomms4900 Publication Status: Online-Only

24845058
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Suzuki, S.
author: Kuenen, J.G.
author: Ishii, S.
author: Nealson, K.H.
journal: Submitted (01-APR-2014) Contact:Shino Suzuki Japan Agency for Marine-Earth Science and Technology; Monobe B200, Nankoku, Kochi 783-8502, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16368:1
position: 16368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16368:1:source
so part of: sequence
organism: Serpentinimonas maccroryi
mol type: genomic DNA
strain: B1
isolation source: Water
type material: type strain of Serpentinimonas mccroryi
plasmid: pSMB1
country: USA:California, The Cedars highly alkaline spring
lat lon: 38.621367 N 123.133117 W
collection date: 2005

1458426
type: Taxonomy
SIO_000068: taxonomy

SMCB_RS11935
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11935
old locus tag: SMCB_p0001
so part of: sequence
location: 14..970
location: region:14-970:1
so has part: feature:14-970:1:exon
subclass of: SO_0000010

position:14:1
position: 14
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:970:1
position: 970
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14-970:1:exon

SMCB_RS11935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11935
old locus tag: SMCB_p0001
inference: COORDINATES: protein motif:HMM:NF021637.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MIPPADVVAARVEMMRQARAKRAQEEIDAQAMKLGGLLPDKHKQVDFFVADLVDYALKDDQATMEAPIFSLTTREDKKLWRWTSSDGKKTVEVAPGFYGRATQHDKDVLIYCTSQLVAALNAGKKLQRVVRFTAYDFLVATNRNTRGDDYERLRDALNRLAGTQITTNIVTGKKGGRAAKGFGIIDTWEVVEKAPGDSRMVAVEVKLSDWLFNAINAKEVLTISRDYFRLRKPLERRLYEIARKHTGAQGMWDIGLEALRDKCGSTVARLRQFRAELETIIKADTLPEYRLTLTSDGKVRFYTRDIQQLANCILKGKK
SIO_010081: SMCB_RS11935
subclass of: SO_0000673
so part of: SMCB_RS11935
location: 14..970
location: region:14-970:1
so has part: feature:14-970:1:exon

WP_082027494.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14-970:1:exon

SMCB_RS11940
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11940
old locus tag: SMCB_p0002
so part of: sequence
location: 967..1251
location: region:967-1251:1
so has part: feature:967-1251:1:exon
subclass of: SO_0000010

position:967:1
position: 967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1251:1
position: 1251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:967-1251:1:exon

SMCB_RS11940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11940
old locus tag: SMCB_p0002
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSGIFTVTIGEENGMPSVALAIAGVFRPDSDVSQMVTNIVGALFASIDEINAKGTDYKFAIIGDPPTRSEPEKKAPKAPKGRKPRAPKTVDKSV
SIO_010081: SMCB_RS11940
subclass of: SO_0000673
so part of: SMCB_RS11940
location: 967..1251
location: region:967-1251:1
so has part: feature:967-1251:1:exon

WP_029463527.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:967-1251:1:exon

SMCB_RS11945
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11945
old locus tag: SMCB_p0003
so part of: sequence
location: 1831..2109
location: region:1831-2109:1
so has part: feature:1831-2109:1:exon
subclass of: SO_0000010

position:1831:1
position: 1831
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2109:1
position: 2109
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1831-2109:1:exon

SMCB_RS11945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11945
old locus tag: SMCB_p0003
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004083921.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnT family toxin
translation: MEIEWDADKAARNLTKHGVSFEDAALVFYDSNRVEAYDGRADYGEDRWATIGLAYCAVLYVVYTVRHEHTIRLISARKANASERKHYRQAHP
SIO_010081: SMCB_RS11945
subclass of: SO_0000673
so part of: SMCB_RS11945
location: 1831..2109
location: region:1831-2109:1
so has part: feature:1831-2109:1:exon

WP_029463528.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1831-2109:1:exon

SMCB_RS11950
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11950
old locus tag: SMCB_p0004
so part of: sequence
location: 2069..2389
location: region:2069-2389:1
so has part: feature:2069-2389:1:exon
subclass of: SO_0000010

position:2069:1
position: 2069
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2389:1
position: 2389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2069-2389:1:exon

SMCB_RS11950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11950
old locus tag: SMCB_p0004
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013124593.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BrnA antitoxin family protein
translation: MPAKESTIVKRTLDLKRPPRLGTEQKARLAAVASMPDEQIDYSDAPALPDAVWMKAAAELPHAKKQVTLRIDADVLAYFKHAGKRYQSRMNAVLRSYVEAHKAQAK
SIO_010081: SMCB_RS11950
subclass of: SO_0000673
so part of: SMCB_RS11950
location: 2069..2389
location: region:2069-2389:1
so has part: feature:2069-2389:1:exon

WP_045538175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2069-2389:1:exon

SMCB_RS13155
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS13155
pseudo: true
so part of: sequence
location: <2374..2494
location: region:2374-2494:1
so has part: feature:2374-2494:1:exon
subclass of: SO_0000010

position:2374:1
position: 2374
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:2494:1
position: 2494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2374-2494:1:exon

SMCB_RS13155
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS13155
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011342942.1
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
SIO_010081: SMCB_RS13155
subclass of: SO_0000673
so part of: SMCB_RS13155
location: <2374..2494
location: region:2374-2494:1
so has part: feature:2374-2494:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2374-2494:1:exon

SMCB_RS11955
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11955
old locus tag: SMCB_p0006
so part of: sequence
location: complement(3003..3398)
location: region:3003-3398:-1
so has part: feature:3003-3398:-1:exon
subclass of: SO_0000010

position:3003:-1
position: 3003
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3398:-1
position: 3398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3003-3398:-1:exon

SMCB_RS11955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11955
old locus tag: SMCB_p0006
inference: COORDINATES: protein motif:HMM:NF013970.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MIGLDTNVLVRVLVDDGSADVTKARKFVAAQAAEGCDFFVDTVVLVEMVWVLETVFGYGRTDIGTAIDAILGNAAYVVDGRETVAAALALFRNGKADFSDCLIVARNAAAGCTGTASLDKAMRPLSGVIAL
SIO_010081: SMCB_RS11955
subclass of: SO_0000673
so part of: SMCB_RS11955
location: complement(3003..3398)
location: region:3003-3398:-1
so has part: feature:3003-3398:-1:exon

WP_029463530.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3003-3398:-1:exon

SMCB_RS11960
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11960
old locus tag: SMCB_p0007
so part of: sequence
location: complement(3395..3652)
location: region:3395-3652:-1
so has part: feature:3395-3652:-1:exon
subclass of: SO_0000010

position:3395:-1
position: 3395
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3652:-1
position: 3652
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3395-3652:-1:exon

SMCB_RS11960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11960
old locus tag: SMCB_p0007
inference: COORDINATES: protein motif:HMM:NF015947.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AbrB/MazE/SpoVT family DNA-binding domain-containing protein
translation: MLATLTSKGQVTLPAPIRAALRLDAGARLDFALQDDGSIRVVPVSRDPLAVCAVLPKPLRGPVSVADMRAAVAGRAAERFARGAK
SIO_010081: SMCB_RS11960
subclass of: SO_0000673
so part of: SMCB_RS11960
location: complement(3395..3652)
location: region:3395-3652:-1
so has part: feature:3395-3652:-1:exon

WP_029463531.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3395-3652:-1:exon

SMCB_RS11965
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11965
old locus tag: SMCB_p0008
so part of: sequence
location: complement(3839..4567)
location: region:3839-4567:-1
so has part: feature:3839-4567:-1:exon
subclass of: SO_0000010

position:3839:-1
position: 3839
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4567:-1
position: 4567
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3839-4567:-1:exon

SMCB_RS11965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11965
old locus tag: SMCB_p0008
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018413503.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MRPTEFPAEAIIAAGQSLQAAGRNVTGFALRQRVGGGNPARLRQVWDEYLASNTTAQAQPLAELPVEVADEVAAVTAALKERITTLAVELNDKAVKAAERRVAEVVRAAGEQREQAERELADATSTVDDLEKTLDATRSEVEALGGKLTDSQAHGQAQAVELAQLRERLTAAEQSIRSDAEAFERLRTELAQARSEAQAAREDAARLRGQVEALEGQRAELVQVLAERPVAAPKAERPASKG
SIO_010081: SMCB_RS11965
subclass of: SO_0000673
so part of: SMCB_RS11965
location: complement(3839..4567)
location: region:3839-4567:-1
so has part: feature:3839-4567:-1:exon

WP_034112471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3839-4567:-1:exon

SMCB_RS11970
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11970
old locus tag: SMCB_p0009
so part of: sequence
location: complement(4849..5136)
location: region:4849-5136:-1
so has part: feature:4849-5136:-1:exon
subclass of: SO_0000010

position:4849:-1
position: 4849
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5136:-1
position: 5136
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4849-5136:-1:exon

SMCB_RS11970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11970
old locus tag: SMCB_p0009
inference: COORDINATES: protein motif:HMM:NF016876.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MKAVAFSPAAQADIGEIWDYSADRWGPDQADNYIDAIRDACYALARGTKHGRPAEVLPDFQKYLCGSHVVYFLNYPDHLDVIRVLHQRQDAERHL
SIO_010081: SMCB_RS11970
subclass of: SO_0000673
so part of: SMCB_RS11970
location: complement(4849..5136)
location: region:4849-5136:-1
so has part: feature:4849-5136:-1:exon

WP_029463533.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4849-5136:-1:exon

SMCB_RS11975
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11975
old locus tag: SMCB_p0010
so part of: sequence
location: complement(5133..5381)
location: region:5133-5381:-1
so has part: feature:5133-5381:-1:exon
subclass of: SO_0000010

position:5133:-1
position: 5133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5381:-1
position: 5381
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5133-5381:-1:exon

SMCB_RS11975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11975
old locus tag: SMCB_p0010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012760089.1
GO process: GO:0051983 - regulation of chromosome segregation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system ParD family antitoxin
translation: MSRNTSVSLGTHFASFIDAQVQGGRYGSASDVVRAGLRLLEEHESKVKALQDALRAGLESGEPRAFDFEAFKARKRAGLQPQ
SIO_010081: SMCB_RS11975
subclass of: SO_0000673
so part of: SMCB_RS11975
location: complement(5133..5381)
location: region:5133-5381:-1
so has part: feature:5133-5381:-1:exon

WP_029463534.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5133-5381:-1:exon

SMCB_RS11980
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11980
old locus tag: SMCB_p0011
so part of: sequence
location: 6967..7629
location: region:6967-7629:1
so has part: feature:6967-7629:1:exon
subclass of: SO_0000010

position:6967:1
position: 6967
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7629:1
position: 7629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6967-7629:1:exon

SMCB_RS11980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11980
old locus tag: SMCB_p0011
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIYDLTTGLQAVLLHFQRGYVLTTECPIVVHADKRDSLMEKFIEVYGVNFPAWKRYSRKLKGLPSAVALDLSVLGQPHSRQIVLLSTAFDDRLPKDAQWRREKWVPLKRVQDFVLSNEVGSDRQTSLSWRLAPEVIAPQARYWLKLIKEQKASAAMMHMREAVELYPAYAGVRKQLKQEISSLKKLIERKYKVPYTGPDPDKLPIIAGFRASADRGLTK
SIO_010081: SMCB_RS11980
subclass of: SO_0000673
so part of: SMCB_RS11980
location: 6967..7629
location: region:6967-7629:1
so has part: feature:6967-7629:1:exon

WP_029463535.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6967-7629:1:exon

SMCB_RS11990
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11990
old locus tag: SMCB_p0013
so part of: sequence
location: complement(8674..9903)
location: region:8674-9903:-1
so has part: feature:8674-9903:-1:exon
subclass of: SO_0000010

position:8674:-1
position: 8674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9903:-1
position: 9903
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8674-9903:-1:exon

SMCB_RS11990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11990
old locus tag: SMCB_p0013
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008328818.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO process: GO:0006313 - transposition, DNA-mediated [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MSDPVTVEITRGPLVESRHRVDVCVVDAQGGRVLVRGDVETPVFPRSAVKGIQAIPLVATGAAERLGLTDAHVHFHVCAVDGVFEEVAGEEVDAADAASQSSPSRIIFHPATGVTADAVGQVQASLRKRILRAFVGRGLLESFEAQEMLGYKHSGFSADTSVCIAAHDRAGLERLLRYCARPPFAMERLRKAGSELVYRCAKQHSEPGSLPHNKRGVKADEITLTPLELIERIAKLVPPPRTHRHRYFGVLAPNSPLRPAVTALARDAAVKPAQVQAEPASTAAGEGALGVRSPLPTQTEPAQPVPPKRPAHYLWAVLMARIYEVFPLLCPICGGQMHIIAFITHSADIRQILEHIGVETEPPHITPARGPPLWDECDAQAAEGVEPAPDWDEATQPAPDFEVDQRVSW
SIO_010081: SMCB_RS11990
subclass of: SO_0000673
so part of: SMCB_RS11990
location: complement(8674..9903)
location: region:8674-9903:-1
so has part: feature:8674-9903:-1:exon

WP_268747546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8674-9903:-1:exon

SMCB_RS11995
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS11995
old locus tag: SMCB_p0014
so part of: sequence
location: complement(9959..10570)
location: region:9959-10570:-1
so has part: feature:9959-10570:-1:exon
subclass of: SO_0000010

position:9959:-1
position: 9959
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10570:-1
position: 10570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9959-10570:-1:exon

SMCB_RS11995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS11995
old locus tag: SMCB_p0014
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006388724.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysE family translocator
translation: MATSAWLLAIVLFAISTSFSPGPNNLLLVTSGAKFGLSRTWRHIMGVAFGFPVMIAIIAIFLGAVFQALPWLHYALNYVGAAYLLYLTWKLVMAGGSMEEGNVGKPIGFVEAALFQWVNPKAWVMATGAIAAYTTTAGFGFEVAAIVAVFTLVGLGSSVTWASFGSFIARFLHTPARMRAFNIVLGLMLLASIVPILMARAPG
SIO_010081: SMCB_RS11995
subclass of: SO_0000673
so part of: SMCB_RS11995
location: complement(9959..10570)
location: region:9959-10570:-1
so has part: feature:9959-10570:-1:exon

WP_029463538.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9959-10570:-1:exon

SMCB_RS12000
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS12000
old locus tag: SMCB_p0015
so part of: sequence
location: complement(10584..11063)
location: region:10584-11063:-1
so has part: feature:10584-11063:-1:exon
subclass of: SO_0000010

position:10584:-1
position: 10584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11063:-1
position: 11063
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10584-11063:-1:exon

SMCB_RS12000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS12000
old locus tag: SMCB_p0015
inference: COORDINATES: protein motif:HMM:NF024092.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nuclear transport factor 2 family protein
translation: MSTSAVPSPSASPLASAVARYFEACNSGDRDLFFGLFAPDAGHYLPKGMFGPFHDVESLFARWREDAARTGAYWIADRVYADDAARTAIAEWTAVKPKDGVYFRGVDVFAFDEQGRIVEVRVYYASPRDPSIGDNELGGYDYHDGGWHVPAAPVSAHGT
SIO_010081: SMCB_RS12000
subclass of: SO_0000673
so part of: SMCB_RS12000
location: complement(10584..11063)
location: region:10584-11063:-1
so has part: feature:10584-11063:-1:exon

WP_045477517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10584-11063:-1:exon

SMCB_RS12005
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS12005
old locus tag: SMCB_p0016
so part of: sequence
location: complement(11060..12316)
location: region:11060-12316:-1
so has part: feature:11060-12316:-1:exon
subclass of: SO_0000010

position:11060:-1
position: 11060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12316:-1
position: 12316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11060-12316:-1:exon

SMCB_RS12005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS12005
old locus tag: SMCB_p0016
inference: COORDINATES: protein motif:HMM:NF039440.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6421 family protein
translation: MIGRLVEDVARVGAAQEPDGGLRADAAGEAARAALPALAEEAARIAEGLGARTYGEALVADTRDWLARGADGRPDFSRSRDALRAPEDERPFFFFGPLRLANGGRVGYRFECFLALREEPGDAPYRALYAGFPHPKNICQSAHLIAGSPGLTRGNNIVFFPENIAAPDVPDKQLYALFFFNKFKAIYETITIPSWDRVGRPEALVASRGADARDVYEARCVWGYLHDYFHHRGPRSFDEHIGVKTRWFTGLLEELKVDLQSFRVCRAGGVPHGAMVAEFILFDRTMRYPGEPDWSRNFDSGTGLLLLAYLAEAGAIGVSSTGRLDVDLLAVEAAGARFAAEVEALERLPDADYLEAAEAMVRRYLPAPGPGEIRFGVPEILRGSLFHDLVGRAPTIAFSLDEGALGEKLRPQARRLAA
SIO_010081: SMCB_RS12005
subclass of: SO_0000673
so part of: SMCB_RS12005
location: complement(11060..12316)
location: region:11060-12316:-1
so has part: feature:11060-12316:-1:exon

WP_052369219.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11060-12316:-1:exon

SMCB_RS12010
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS12010
old locus tag: SMCB_p0017
so part of: sequence
location: complement(12313..12867)
location: region:12313-12867:-1
so has part: feature:12313-12867:-1:exon
subclass of: SO_0000010

position:12313:-1
position: 12313
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12867:-1
position: 12867
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12313-12867:-1:exon

SMCB_RS12010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS12010
old locus tag: SMCB_p0017
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003156525.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSSPPAELAQLTAIHTLGPTGTNCEAAARHYAASRGLSVEIVLHRTLEEGMARVLDDPRSALLGCVVYPDLHGLVFPYLDRMVLADQFLFDTFPMLLAAREPGVRPTRVASHPAPRALVPAGVEVVLATSNAAAARSCAAGEVDGCITTRPAAEANGLAILVDHGPVPMGFTIHAHRALARRAA
SIO_010081: SMCB_RS12010
subclass of: SO_0000673
so part of: SMCB_RS12010
location: complement(12313..12867)
location: region:12313-12867:-1
so has part: feature:12313-12867:-1:exon

WP_045538176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12313-12867:-1:exon

SMCB_RS12015
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS12015
old locus tag: SMCB_p0018
pseudo: true
so part of: sequence
location: complement(13236..>13766)
location: region:13236-13766:-1
so has part: feature:13236-13766:-1:exon
subclass of: SO_0000010

position:13236:-1
position: 13236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13766:-1
position: 13766
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13236-13766:-1:exon

SMCB_RS12015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS12015
old locus tag: SMCB_p0018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008328818.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS91 family transposase
SIO_010081: SMCB_RS12015
subclass of: SO_0000673
so part of: SMCB_RS12015
location: complement(13236..>13766)
location: region:13236-13766:-1
so has part: feature:13236-13766:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13236-13766:-1:exon

SMCB_RS13160
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS13160
old locus tag: SMCB_p0019
so part of: sequence
location: complement(13666..13911)
location: region:13666-13911:-1
so has part: feature:13666-13911:-1:exon
subclass of: SO_0000010

position:13666:-1
position: 13666
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13911:-1
position: 13911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13666-13911:-1:exon

SMCB_RS13160
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS13160
old locus tag: SMCB_p0019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017164775.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MELFWTPEATQDRDEIYNYIEADNPAAALALDELFAEKAGRLVDHPGLGQAGAPAAHAPPPLLWRAGTELTLEACRHGAGA
SIO_010081: SMCB_RS13160
subclass of: SO_0000673
so part of: SMCB_RS13160
location: complement(13666..13911)
location: region:13666-13911:-1
so has part: feature:13666-13911:-1:exon

WP_231851300.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13666-13911:-1:exon

SMCB_RS12025
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS12025
old locus tag: SMCB_p0020
so part of: sequence
location: complement(13911..14201)
location: region:13911-14201:-1
so has part: feature:13911-14201:-1:exon
subclass of: SO_0000010

position:14201:-1
position: 14201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13911-14201:-1:exon

SMCB_RS12025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS12025
old locus tag: SMCB_p0020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010104014.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDATFTFRVDESLKSEFSSAAKNRDRNAAQLLRDFMRDFVQQQQEAAAHDAWFHRQVQIGLDSANAGNLIQSAEVEAEFAAKRAATRRRLEASAE
SIO_010081: SMCB_RS12025
subclass of: SO_0000673
so part of: SMCB_RS12025
location: complement(13911..14201)
location: region:13911-14201:-1
so has part: feature:13911-14201:-1:exon

WP_029463543.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13911-14201:-1:exon

SMCB_RS12030
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS12030
old locus tag: SMCB_p0021
so part of: sequence
location: 14406..15014
location: region:14406-15014:1
so has part: feature:14406-15014:1:exon
subclass of: SO_0000010

position:14406:1
position: 14406
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15014:1
position: 15014
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14406-15014:1:exon

SMCB_RS12030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS12030
old locus tag: SMCB_p0021
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010960876.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MNTPAALDLEGGRLLLGYARVSTDGQDLSNQRADLHAAGCSRIYAEKITGTRRERPELARLLDHLRAGDVVTVARLDRLARSTRDLLDIAERIHAVGAGLRSLAEPWADTTTPAGRMVLTVFAGIAEFERSLIIDRTKYGREAAKARGVKFGPRPTLTPAQIAHARELIDQSGRTVKDAAALLGVHRSTLYRALGHSESISR
SIO_010081: SMCB_RS12030
subclass of: SO_0000673
so part of: SMCB_RS12030
location: 14406..15014
location: region:14406-15014:1
so has part: feature:14406-15014:1:exon

WP_029463544.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14406-15014:1:exon

SMCB_RS12035
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
gene: parA
locus tag: SMCB_RS12035
old locus tag: SMCB_p0022
so part of: sequence
location: 15184..15813
location: region:15184-15813:1
so has part: feature:15184-15813:1:exon
subclass of: SO_0000010

position:15184:1
position: 15184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15813:1
position: 15813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15184-15813:1:exon

SMCB_RS12035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
gene: parA
locus tag: SMCB_RS12035
old locus tag: SMCB_p0022
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MKVIAVLNQKGGSGKTTIATHLARALQLAGADVLLVDSDPQGSARDWAAVREDQPLTVVGIDRPTIDRDLKQIARKDFVVIDGAPQAADLAVSAIKAADFVLIPVQPSPYDIWATADLVDLVKQRIEVTDGRLQAAFVVSRAIKGTRIGGEVTDALTGYGLPILASRITQRVSYPGTAAVGTTVMDSEPGGDAAAEVHALANEIKQKLI
SIO_010081: SMCB_RS12035
subclass of: SO_0000673
so part of: SMCB_RS12035
location: 15184..15813
location: region:15184-15813:1
so has part: feature:15184-15813:1:exon

WP_029463545.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15184-15813:1:exon

SMCB_RS12040
type: Gene
subclass of: SO_0000704
RO_0002162: 1458426
locus tag: SMCB_RS12040
old locus tag: SMCB_p0023
so part of: sequence
location: 15834..16049
location: region:15834-16049:1
so has part: feature:15834-16049:1:exon
subclass of: SO_0000010

position:15834:1
position: 15834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16049:1
position: 16049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15834-16049:1:exon

SMCB_RS12040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1458426
locus tag: SMCB_RS12040
old locus tag: SMCB_p0023
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017154883.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chromosome partitioning protein ParB
translation: MSKSVNTLTAGRPSARSNKAATLASLADEASTKRVNFELPAEQHTKLKIFAAKQGKTIKELLTEYVGRLPE
SIO_010081: SMCB_RS12040
subclass of: SO_0000673
so part of: SMCB_RS12040
location: 15834..16049
location: region:15834-16049:1
so has part: feature:15834-16049:1:exon

WP_029463546.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15834-16049:1:exon