Bacillus badius strain NBPM-293 plasmid pPM6, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
Complete Genome Sequence of Bacillus badius NBPM-293, a Plant Growth-Promoting Rhizobacterium Isolated from Soil
Submitted (31-AUG-2021) Hubei Biopesticide Engineering Research Center, National Biopesticide Engineering Technology Research Center, Hubei Academy of Agricultural Sciences, No.8,Nanhu Ave.,Hongshan District, Wuhan, Hubei 430064, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP082366.1.\nBacteria and source DNA available from National Biopesticide\nEngineering Technology Research Center.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 2.1.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 243.5x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/18/2023 15:42:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,391\nCDSs (total) :: 4,254\nGenes (coding) :: 4,207\nCDSs (with protein) :: 4,207\nGenes (RNA) :: 137\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 99\nncRNAs :: 5\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 14 of 47\nPseudo Genes (incomplete) :: 29 of 47\nPseudo Genes (internal stop) :: 9 of 47\nPseudo Genes (multiple problems) :: 5 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010891078.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017250230.1
COORDINATES: similar to AA sequence:RefSeq:WP_002817982.1
GO:0019152 - acetoin dehydrogenase activity [Evidence IEA]
GO:0045150 - acetoin catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017542.2
winged helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013258.2
GO:0006310 - DNA recombination [Evidence IEA]