Bacillus badius strain NBPM-293 plasmid pPM400, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
Complete Genome Sequence of Bacillus badius NBPM-293, a Plant Growth-Promoting Rhizobacterium Isolated from Soil
Submitted (31-AUG-2021) Hubei Biopesticide Engineering Research Center, National Biopesticide Engineering Technology Research Center, Hubei Academy of Agricultural Sciences, No.8,Nanhu Ave.,Hongshan District, Wuhan, Hubei 430064, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP082364.1.\nBacteria and source DNA available from National Biopesticide\nEngineering Technology Research Center.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 2.1.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 243.5x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 06/18/2023 15:42:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,391\nCDSs (total) :: 4,254\nGenes (coding) :: 4,207\nCDSs (with protein) :: 4,207\nGenes (RNA) :: 137\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 99\nncRNAs :: 5\nPseudo Genes (total) :: 47\nCDSs (without protein) :: 47\nPseudo Genes (ambiguous residues) :: 0 of 47\nPseudo Genes (frameshifted) :: 14 of 47\nPseudo Genes (incomplete) :: 29 of 47\nPseudo Genes (internal stop) :: 9 of 47\nPseudo Genes (multiple problems) :: 5 of 47\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008177670.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
S-layer homology domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003330740.1
GO:0030436 - asexual sporulation [Evidence IEA]; GO:0009847 - spore germination [Evidence IEA]
Ger(x)C family spore germination protein
COORDINATES: similar to AA sequence:RefSeq:WP_014460537.1
GO:0009847 - spore germination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003330738.1
COORDINATES: similar to AA sequence:RefSeq:WP_018392038.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002016738.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010648644.1
COORDINATES: similar to AA sequence:RefSeq:WP_020063219.1
GO:0005215 - transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000673606.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000668618.1
cyclic nucleotide-binding domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019377167.1
COORDINATES: protein motif:HMM:NF024710.2
COORDINATES: similar to AA sequence:RefSeq:WP_018708185.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612034.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00912.1
COORDINATES: similar to AA sequence:RefSeq:WP_003429047.1
GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid transport system II carrier protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00230
T-box leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF026041.2
COORDINATES: similar to AA sequence:RefSeq:WP_017727418.1
COORDINATES: protein motif:HMM:NF017691.2
COORDINATES: similar to AA sequence:RefSeq:WP_002073783.1
COORDINATES: similar to AA sequence:RefSeq:WP_002073784.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611172.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008175126.1
COORDINATES: protein motif:HMM:NF019997.2
COORDINATES: similar to AA sequence:RefSeq:WP_000114569.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: similar to AA sequence:RefSeq:WP_004233231.1
COORDINATES: similar to AA sequence:RefSeq:WP_010652043.1
COORDINATES: similar to AA sequence:RefSeq:WP_004233215.1
COORDINATES: similar to AA sequence:RefSeq:WP_004233214.1
COORDINATES: similar to AA sequence:RefSeq:WP_004233211.1
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_002567219.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010531170.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: similar to AA sequence:RefSeq:WP_010529453.1
COORDINATES: similar to AA sequence:RefSeq:WP_004224145.1
COORDINATES: protein motif:HMM:NF019450.2
COORDINATES: protein motif:HMM:TIGR01637.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
ArpU family phage packaging/lysis transcriptional regulator
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015240651.1
COORDINATES: similar to AA sequence:RefSeq:WP_016839616.1
COORDINATES: similar to AA sequence:RefSeq:WP_012294732.1
COORDINATES: similar to AA sequence:RefSeq:WP_003331945.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014641764.1
COORDINATES: similar to AA sequence:RefSeq:WP_014641765.1
COORDINATES: similar to AA sequence:RefSeq:WP_010344816.1
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012354.2
LysR family transcriptional regulator substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013781863.1
COORDINATES: similar to AA sequence:RefSeq:WP_016995179.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
type III restriction-modification system endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_016995178.1
COORDINATES: similar to AA sequence:RefSeq:WP_016995177.1
COORDINATES: similar to AA sequence:RefSeq:WP_012103574.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016995174.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012103571.1
COORDINATES: similar to AA sequence:RefSeq:WP_012103570.1
COORDINATES: similar to AA sequence:RefSeq:NP_390281.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007430192.1
COORDINATES: similar to AA sequence:RefSeq:WP_010896537.1
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_004451635.1
COORDINATES: similar to AA sequence:RefSeq:WP_000647273.1
COORDINATES: similar to AA sequence:RefSeq:WP_020424519.1
COORDINATES: protein motif:HMM:NF012655.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020073033.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
PhzF family phenazine biosynthesis protein
COORDINATES: protein motif:HMM:NF015648.2
COORDINATES: similar to AA sequence:RefSeq:WP_011248511.1
COORDINATES: similar to AA sequence:RefSeq:WP_007083597.1
COORDINATES: similar to AA sequence:RefSeq:WP_009335503.1
COORDINATES: similar to AA sequence:RefSeq:WP_010305703.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007083600.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_003252006.1
GO:0004736 - pyruvate carboxylase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013522943.1
COORDINATES: similar to AA sequence:RefSeq:WP_003185481.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0019516 - lactate oxidation [Evidence IEA]
LutB/LldF family L-lactate oxidation iron-sulfur protein
COORDINATES: similar to AA sequence:RefSeq:WP_003253032.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018924428.1
COORDINATES: similar to AA sequence:RefSeq:WP_013055945.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014461188.1
GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013056901.1
GO:0046983 - protein dimerization activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007086015.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012744.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03025.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009331598.1
COORDINATES: similar to AA sequence:RefSeq:WP_018767109.1
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF025001.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004715 - non-membrane spanning protein tyrosine kinase activity [Evidence IEA]; GO:0004713 - protein tyrosine kinase activity [Evidence IEA]
CpsD/CapB family tyrosine-protein kinase
COORDINATES: similar to AA sequence:RefSeq:WP_009610127.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018931917.1
COORDINATES: similar to AA sequence:RefSeq:WP_010898283.1
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_003219064.1
COORDINATES: similar to AA sequence:RefSeq:WP_015843651.1
COORDINATES: similar to AA sequence:RefSeq:WP_015251590.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015714403.1
COORDINATES: similar to AA sequence:RefSeq:NP_390590.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009330319.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011229856.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0015662 - P-type ion transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017474136.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_009336203.1
GO:0004181 - metallocarboxypeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012294502.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019153133.1
COORDINATES: similar to AA sequence:RefSeq:WP_006440781.1
COORDINATES: similar to AA sequence:RefSeq:WP_002347126.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009336809.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003240509.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003240511.1
COORDINATES: similar to AA sequence:RefSeq:WP_007085517.1
COORDINATES: similar to AA sequence:RefSeq:WP_003240513.1
COORDINATES: similar to AA sequence:RefSeq:WP_012574413.1
COORDINATES: similar to AA sequence:RefSeq:WP_017184864.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: similar to AA sequence:RefSeq:WP_000931455.1
COORDINATES: similar to AA sequence:RefSeq:WP_000415740.1
COORDINATES: similar to AA sequence:RefSeq:WP_003364752.1
COORDINATES: similar to AA sequence:RefSeq:WP_002100512.1
COORDINATES: similar to AA sequence:RefSeq:WP_004229824.1
COORDINATES: similar to AA sequence:RefSeq:WP_018395688.1
COORDINATES: similar to AA sequence:RefSeq:WP_009361144.1
COORDINATES: protein motif:HMM:NF019097.2
COORDINATES: similar to AA sequence:RefSeq:WP_018392022.1
COORDINATES: similar to AA sequence:RefSeq:WP_018392023.1
COORDINATES: similar to AA sequence:RefSeq:WP_018392024.1
GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018392025.1
COORDINATES: similar to AA sequence:RefSeq:WP_008405422.1
biotin-dependent carboxyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008405423.1
COORDINATES: similar to AA sequence:RefSeq:WP_018394661.1
COORDINATES: similar to AA sequence:RefSeq:WP_007084390.1
COORDINATES: similar to AA sequence:RefSeq:WP_009336046.1
COORDINATES: similar to AA sequence:RefSeq:WP_010194780.1
COORDINATES: similar to AA sequence:RefSeq:WP_019381984.1
COORDINATES: similar to AA sequence:RefSeq:WP_000475532.1
COORDINATES: similar to AA sequence:RefSeq:WP_003178846.1
COORDINATES: similar to AA sequence:RefSeq:WP_000447114.1
COORDINATES: similar to AA sequence:RefSeq:WP_008174590.1
COORDINATES: similar to AA sequence:RefSeq:WP_006636193.1
COORDINATES: similar to AA sequence:RefSeq:WP_013060094.1
COORDINATES: similar to AA sequence:RefSeq:WP_004227228.1
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
GO:0006813 - potassium ion transport [Evidence IEA]
potassium-transporting ATPase subunit KdpC
COORDINATES: similar to AA sequence:RefSeq:WP_008178413.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
potassium-transporting ATPase subunit KdpB
COORDINATES: similar to AA sequence:RefSeq:WP_004227226.1
potassium-transporting ATPase subunit KdpA
COORDINATES: similar to AA sequence:RefSeq:WP_009370133.1
COORDINATES: similar to AA sequence:RefSeq:WP_002582081.1
COORDINATES: protein motif:HMM:NF024098.2
COORDINATES: similar to AA sequence:RefSeq:WP_019119066.1
COORDINATES: similar to AA sequence:RefSeq:WP_004230939.1
COORDINATES: similar to AA sequence:RefSeq:WP_018706364.1
COORDINATES: similar to AA sequence:RefSeq:WP_003350814.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023354.2
COORDINATES: protein motif:HMM:TIGR01035.1
GO:0008883 - glutamyl-tRNA reductase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014218.2
COORDINATES: protein motif:HMM:NF025885.2
COORDINATES: similar to AA sequence:RefSeq:WP_001985671.1
GO:0004497 - monooxygenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000710815.1
COORDINATES: similar to AA sequence:RefSeq:WP_017473607.1
effector binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003330092.1
COORDINATES: similar to AA sequence:RefSeq:WP_005831073.1
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012613.2
COORDINATES: similar to AA sequence:RefSeq:WP_000703391.1
COORDINATES: similar to AA sequence:RefSeq:WP_016103874.1
COORDINATES: similar to AA sequence:RefSeq:WP_000567615.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000087050.1
COORDINATES: similar to AA sequence:RefSeq:WP_002085049.1
COORDINATES: similar to AA sequence:RefSeq:WP_019393558.1
COORDINATES: similar to AA sequence:RefSeq:WP_001215235.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017560160.1
COORDINATES: similar to AA sequence:RefSeq:WP_020060097.1
COORDINATES: similar to AA sequence:RefSeq:WP_008297991.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020060098.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_016717709.1
COORDINATES: similar to AA sequence:RefSeq:WP_004224330.1
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012749444.1
COORDINATES: similar to AA sequence:RefSeq:WP_004431851.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002414216.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024438.2
COORDINATES: similar to AA sequence:RefSeq:WP_000411061.1
COORDINATES: protein motif:HMM:NF012706.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
peptide ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010728931.1
COORDINATES: similar to AA sequence:RefSeq:WP_009711176.1
COORDINATES: similar to AA sequence:RefSeq:WP_003184761.1
COORDINATES: similar to AA sequence:RefSeq:WP_013059689.1
COORDINATES: similar to AA sequence:RefSeq:WP_018394991.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0009061 - anaerobic respiration [Evidence IEA]; GO:0015942 - formate metabolic process [Evidence IEA]
formate dehydrogenase accessory sulfurtransferase FdhD
COORDINATES: similar to AA sequence:RefSeq:WP_012932431.1
COORDINATES: similar to AA sequence:RefSeq:WP_009765967.1
4-hydroxyphenylacetate 3-hydroxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018707439.1
COORDINATES: similar to AA sequence:RefSeq:WP_018401036.1
COORDINATES: similar to AA sequence:RefSeq:WP_018707437.1
COORDINATES: similar to AA sequence:RefSeq:WP_008955943.1
GO:0015171 - amino acid transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018707427.1
COORDINATES: similar to AA sequence:RefSeq:WP_018707426.1
COORDINATES: similar to AA sequence:RefSeq:WP_018707434.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004434073.1
COORDINATES: similar to AA sequence:RefSeq:WP_009285936.1
COORDINATES: similar to AA sequence:RefSeq:WP_018707438.1
COORDINATES: similar to AA sequence:RefSeq:WP_009765961.1
COORDINATES: similar to AA sequence:RefSeq:WP_000224170.1
GO:0008797 - aspartate ammonia-lyase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010531393.1
GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016638 - oxidoreductase activity, acting on the CH-NH2 group of donors [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
FMN-binding glutamate synthase family protein
COORDINATES: nucleotide motif:Rfam:14.4:RF01051
cyclic di-GMP riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012245.2
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: protein motif:HMM:NF018738.2
COORDINATES: similar to AA sequence:RefSeq:WP_003348174.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003348173.1
COORDINATES: similar to AA sequence:RefSeq:WP_016083409.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014096349.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0008888 - glycerol dehydrogenase [NAD+] activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018705518.1
COORDINATES: similar to AA sequence:RefSeq:WP_016994905.1
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016091881.1
COORDINATES: similar to AA sequence:RefSeq:WP_012293226.1
COORDINATES: protein motif:HMM:NF013648.2
GO:0015891 - siderophore transport [Evidence IEA]
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003388739.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015193853.1
COORDINATES: similar to AA sequence:RefSeq:WP_016094988.1
COORDINATES: similar to AA sequence:RefSeq:WP_014663320.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016099.2
GO:0019290 - siderophore biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017437158.1
COORDINATES: similar to AA sequence:RefSeq:WP_005831914.1
COORDINATES: similar to AA sequence:RefSeq:WP_014614636.1
2,3-diaminopropionate biosynthesis protein SbnB
COORDINATES: similar to AA sequence:RefSeq:WP_005270538.1
2,3-diaminopropionate biosynthesis protein SbnA
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_017437168.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_016428803.1
COORDINATES: similar to AA sequence:RefSeq:WP_004228580.1
COORDINATES: similar to AA sequence:RefSeq:WP_013859068.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004228825.1
COORDINATES: similar to AA sequence:RefSeq:WP_003375717.1
COORDINATES: similar to AA sequence:RefSeq:WP_009674810.1
COORDINATES: protein motif:HMM:NF024529.2
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012294216.1
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF024905.2
COORDINATES: similar to AA sequence:RefSeq:WP_016428663.1
COORDINATES: similar to AA sequence:RefSeq:WP_003250901.1
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF018513.2
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: similar to AA sequence:RefSeq:WP_016429338.1
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: similar to AA sequence:RefSeq:WP_003330848.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_008174957.1
COORDINATES: similar to AA sequence:RefSeq:WP_004890417.1
COORDINATES: similar to AA sequence:RefSeq:WP_019381235.1
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF013742.2
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_002402802.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000200617.1
COORDINATES: protein motif:HMM:NF022953.2
COORDINATES: similar to AA sequence:RefSeq:WP_016121195.1
COORDINATES: similar to AA sequence:RefSeq:WP_018930500.1
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: similar to AA sequence:RefSeq:WP_002114416.1
COORDINATES: similar to AA sequence:RefSeq:WP_015613478.1
COORDINATES: similar to AA sequence:RefSeq:WP_000342603.1
COORDINATES: similar to AA sequence:RefSeq:WP_000383890.1
COORDINATES: similar to AA sequence:RefSeq:WP_001226074.1
COORDINATES: similar to AA sequence:RefSeq:WP_000684984.1
COORDINATES: similar to AA sequence:RefSeq:WP_010676490.1
COORDINATES: similar to AA sequence:RefSeq:WP_017690249.1
COORDINATES: similar to AA sequence:RefSeq:WP_009672993.1
COORDINATES: similar to AA sequence:RefSeq:WP_009499276.1
COORDINATES: similar to AA sequence:RefSeq:WP_000061121.1