Campylobacter corcagiensis strain LMG 27932 plasmid pCCORG, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
Complete genome sequencing of Campylobacter and Arcobacter type strains
Submitted (20-MAY-2020) Produce Safety and Microbiology, USDA, ARS, WRRC, 800 Buchanan St., Albany, CA 94710, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP053843.1.\nBacteria and source DNA available from Bacteria available from the\nLMG culture collection.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 821x\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 04:07:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,786\nCDSs (total) :: 1,733\nGenes (coding) :: 1,722\nCDSs (with protein) :: 1,722\nGenes (RNA) :: 53\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 41\nncRNAs :: 3\nPseudo Genes (total) :: 11\nCDSs (without protein) :: 11\nPseudo Genes (ambiguous residues) :: 0 of 11\nPseudo Genes (frameshifted) :: 6 of 11\nPseudo Genes (incomplete) :: 7 of 11\nPseudo Genes (internal stop) :: 3 of 11\nPseudo Genes (multiple problems) :: 4 of 11\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Campylobacter corcagiensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013793.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013521353.1
COORDINATES: similar to AA sequence:RefSeq:WP_006656252.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: protein motif:HMM:NF019945.2
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF024108.2
TraM recognition domain-containing protein
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_016647039.1
COORDINATES: similar to AA sequence:RefSeq:WP_016647037.1
COORDINATES: protein motif:HMM:NF017885.2