Xylella taiwanensis strain PLS206 plasmid pPLS206, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.
Genome sequence of Xylella taiwanensis PLS206
Submitted (18-NOV-2021) Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Rd, Taipei 11529, Taiwan
REFSEQ INFORMATION: The reference sequence is identical to\nCP087679.1.\nBacteria and source DNA available from Chi-Wei Tsai.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. v1.2.10\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: CP053627\nGenome Coverage :: 102.3x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/16/2022 03:23:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,455\nCDSs (total) :: 2,396\nGenes (coding) :: 2,317\nCDSs (with protein) :: 2,317\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 79\nCDSs (without protein) :: 79\nPseudo Genes (ambiguous residues) :: 0 of 79\nPseudo Genes (frameshifted) :: 48 of 79\nPseudo Genes (incomplete) :: 51 of 79\nPseudo Genes (internal stop) :: 33 of 79\nPseudo Genes (multiple problems) :: 41 of 79\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004668256.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011234536.1
COORDINATES: similar to AA sequence:RefSeq:WP_012005370.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014607311.1
COORDINATES: similar to AA sequence:RefSeq:WP_014607310.1
COORDINATES: similar to AA sequence:RefSeq:WP_020852256.1
COORDINATES: similar to AA sequence:RefSeq:WP_014607308.1
COORDINATES: similar to AA sequence:RefSeq:WP_013087959.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_011799409.1
COORDINATES: similar to AA sequence:RefSeq:WP_014607307.1
COORDINATES: similar to AA sequence:RefSeq:WP_014607305.1
COORDINATES: similar to AA sequence:RefSeq:WP_020852259.1
COORDINATES: similar to AA sequence:RefSeq:WP_014607304.1
COORDINATES: similar to AA sequence:RefSeq:WP_011799405.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_020852262.1
COORDINATES: similar to AA sequence:RefSeq:WP_020852263.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020852264.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011799401.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_014607482.1
COORDINATES: similar to AA sequence:RefSeq:WP_010895227.1
COORDINATES: similar to AA sequence:RefSeq:WP_004086687.1
COORDINATES: similar to AA sequence:RefSeq:WP_008316971.1
COORDINATES: similar to AA sequence:RefSeq:WP_011799400.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011799399.1
COORDINATES: similar to AA sequence:RefSeq:WP_014607322.1
COORDINATES: similar to AA sequence:RefSeq:WP_011799437.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_020852243.1
COORDINATES: similar to AA sequence:RefSeq:WP_011799434.1
COORDINATES: similar to AA sequence:RefSeq:WP_015869975.1
type II toxin-antitoxin system MqsA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014028384.1
COORDINATES: similar to AA sequence:RefSeq:WP_017157756.1
COORDINATES: similar to AA sequence:RefSeq:WP_020852248.1
COORDINATES: similar to AA sequence:RefSeq:WP_015042061.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein