Xylella taiwanensis strain PLS206 plasmid pPLS206, complete sequence.
type: Entry
definition: Xylella taiwanensis strain PLS206 plasmid pPLS206, complete sequence.
sequence version: NZ_CP087679.1
sequence date: 2022-12-17
sequence: sequence
division: CON
label: NZ_CP087679.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN23226935
keyword: RefSeq
source: Xylella taiwanensis
organism: Xylella taiwanensis
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP087679.1.\nBacteria and source DNA available from Chi-Wei Tsai.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. v1.2.10\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: CP053627\nGenome Coverage :: 102.3x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/16/2022 03:23:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,455\nCDSs (total) :: 2,396\nGenes (coding) :: 2,317\nCDSs (with protein) :: 2,317\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 79\nCDSs (without protein) :: 79\nPseudo Genes (ambiguous residues) :: 0 of 79\nPseudo Genes (frameshifted) :: 48 of 79\nPseudo Genes (incomplete) :: 51 of 79\nPseudo Genes (internal stop) :: 33 of 79\nPseudo Genes (multiple problems) :: 41 of 79\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 32575
topology: circular
so has quality: SO_0000988
location: 1..32575
location: region:1-32575:1
RO_0002162: 1444770

NZ_CP087679
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN23226935
type: BioSample
SIO_000068: biosample

1
title: Genome sequence of Xylella taiwanensis PLS206
author: Weng, L.-W.
author: Su, C.-C.
author: Tsai, C.-W.
author: Kuo, C.-H.
journal: Unpublished

2
title: Direct Submission
author: Weng, L.-W.
author: Su, C.-C.
author: Tsai, C.-W.
author: Kuo, C.-H.
journal: Submitted (18-NOV-2021) Institute of Plant and Microbial Biology, Academia Sinica, 128 Sec. 2, Academia Rd, Taipei 11529, Taiwan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:32575:1
position: 32575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-32575:1:source
so part of: sequence
organism: Xylella taiwanensis
mol type: genomic DNA
strain: PLS206
isolation source: plant tissue
plasmid: pPLS206
country: Taiwan

1444770
type: Taxonomy
SIO_000068: taxonomy

LPH42_RS11940
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11940
old locus tag: LPH42_11940
so part of: sequence
location: 2..802
location: region:2-802:1
so has part: feature:2-802:1:exon
subclass of: SO_0000010

69683036
type: Gene
SIO_000068: ncbigene

position:2:1
position: 2
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:802:1
position: 802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2-802:1:exon

LPH42_RS11940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11940
old locus tag: LPH42_11940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004668256.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSGKVGSKREHIALAHKAHGYDVELTAGERRVTMSNALTRAGHGLTLAEKRIVATAVSKLDSYRMLNPGEVPRTKITAAEYAETFEVDMDTAYNQLQSAAKQLYSRSITFYEPAHKRKGKPLPPTRVQMRWVGSVKYQDGEGWVELAWWPDLLCHLTGLKRQFTTYQLQQASALRSGYSWKLLELLMRFKSSGWAEYTIEDFKASMDAPPSLSDFGQVKRRIIDPAVKELTEKDGWLIQWEVVKAGRKVKAISFNFMKNPQGVLAL
SIO_010081: LPH42_RS11940
subclass of: SO_0000673
so part of: LPH42_RS11940
location: 2..802
location: region:2-802:1
so has part: feature:2-802:1:exon

WP_230428322.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2-802:1:exon

LPH42_RS11945
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11945
old locus tag: LPH42_11945
so part of: sequence
location: 937..1209
location: region:937-1209:1
so has part: feature:937-1209:1:exon
subclass of: SO_0000010

69683037
type: Gene
SIO_000068: ncbigene

position:937:1
position: 937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1209:1
position: 1209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:937-1209:1:exon

LPH42_RS11945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11945
old locus tag: LPH42_11945
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011234536.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family ribbon-helix-helix protein
translation: MATTIKLNDELRTRIQRLAGLRDRSAHWIMREAITQYVEREEKCDAFRQDAMRAWNEYQANGLHVTHEEADAWFAKLEASEDVEPPKCHE
SIO_010081: LPH42_RS11945
subclass of: SO_0000673
so part of: LPH42_RS11945
location: 937..1209
location: region:937-1209:1
so has part: feature:937-1209:1:exon

WP_230428323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:937-1209:1:exon

LPH42_RS11950
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11950
old locus tag: LPH42_11950
so part of: sequence
location: 1197..1487
location: region:1197-1487:1
so has part: feature:1197-1487:1:exon
subclass of: SO_0000010

69683038
type: Gene
SIO_000068: ncbigene

position:1197:1
position: 1197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1487:1
position: 1487
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1197-1487:1:exon

LPH42_RS11950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11950
old locus tag: LPH42_11950
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012005370.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPRVIWTPPALNDVQRLYRFLAPKDANVARRAVQAIRVGVKVLAHQPRVGRPVDAMDLEFREWLIDFGNSGYVVFYRFDGETAAILAVRHQKEAGY
SIO_010081: LPH42_RS11950
subclass of: SO_0000673
so part of: LPH42_RS11950
location: 1197..1487
location: region:1197-1487:1
so has part: feature:1197-1487:1:exon

WP_230428324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1197-1487:1:exon

LPH42_RS11955
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11955
old locus tag: LPH42_11955
so part of: sequence
location: 1550..1810
location: region:1550-1810:1
so has part: feature:1550-1810:1:exon
subclass of: SO_0000010

69683039
type: Gene
SIO_000068: ncbigene

position:1550:1
position: 1550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1810:1
position: 1810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1550-1810:1:exon

LPH42_RS11955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11955
old locus tag: LPH42_11955
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014607311.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSKLYPTDKVSEVAKMLAEAPTLPLKFIPYSDTIAKLSKHIKDMHFLKNYDARQIAKMINEQGIKITLKEVKSILEVKEKQHKKV
SIO_010081: LPH42_RS11955
subclass of: SO_0000673
so part of: LPH42_RS11955
location: 1550..1810
location: region:1550-1810:1
so has part: feature:1550-1810:1:exon

WP_230428325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1550-1810:1:exon

LPH42_RS11960
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11960
old locus tag: LPH42_11960
so part of: sequence
location: 1871..2041
location: region:1871-2041:1
so has part: feature:1871-2041:1:exon
subclass of: SO_0000010

69683040
type: Gene
SIO_000068: ncbigene

position:1871:1
position: 1871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2041:1
position: 2041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1871-2041:1:exon

LPH42_RS11960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11960
old locus tag: LPH42_11960
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014607310.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVKILMTAVSFALIAFISLTACQSHPQLKKVAKDAAEKPINTPEAAENIKKKYEK
SIO_010081: LPH42_RS11960
subclass of: SO_0000673
so part of: LPH42_RS11960
location: 1871..2041
location: region:1871-2041:1
so has part: feature:1871-2041:1:exon

WP_230428326.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1871-2041:1:exon

LPH42_RS11965
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11965
old locus tag: LPH42_11965
so part of: sequence
location: 2050..2550
location: region:2050-2550:1
so has part: feature:2050-2550:1:exon
subclass of: SO_0000010

69683041
type: Gene
SIO_000068: ncbigene

position:2050:1
position: 2050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2550:1
position: 2550
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2050-2550:1:exon

LPH42_RS11965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11965
old locus tag: LPH42_11965
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020852256.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDGKLFFSLWKSAKSIGIFSALVVLNGAVQAEQEAARAQPFQATRAVEAHTASTPQTIAMKQRVDRMEILVHERNEILSKLNNFDARGDKAALAQIQEDLKSIDLEIALVSGQPIYPTSGVTSSDDGAKQVSSSQTENKESQPKESEKVTYERWDIFKNFGSKGNE
SIO_010081: LPH42_RS11965
subclass of: SO_0000673
so part of: LPH42_RS11965
location: 2050..2550
location: region:2050-2550:1
so has part: feature:2050-2550:1:exon

WP_230428327.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2050-2550:1:exon

LPH42_RS11970
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11970
old locus tag: LPH42_11970
so part of: sequence
location: 2550..2858
location: region:2550-2858:1
so has part: feature:2550-2858:1:exon
subclass of: SO_0000010

69683042
type: Gene
SIO_000068: ncbigene

position:2858:1
position: 2858
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2550-2858:1:exon

LPH42_RS11970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11970
old locus tag: LPH42_11970
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014607308.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MNRILNKMLVKYRKGMVTVAIAVASSNALALGGLDKATETADDIRVWLYALVGVLSTIYLIYLGVMAFTEKKSWADFGWGVVYVSLVGASVAIANWAWKLFA
SIO_010081: LPH42_RS11970
subclass of: SO_0000673
so part of: LPH42_RS11970
location: 2550..2858
location: region:2550-2858:1
so has part: feature:2550-2858:1:exon

WP_230428328.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2550-2858:1:exon

LPH42_RS11975
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11975
old locus tag: LPH42_11975
so part of: sequence
location: 2863..3246
location: region:2863-3246:1
so has part: feature:2863-3246:1:exon
subclass of: SO_0000010

69683043
type: Gene
SIO_000068: ncbigene

position:2863:1
position: 2863
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3246:1
position: 3246
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2863-3246:1:exon

LPH42_RS11975
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11975
old locus tag: LPH42_11975
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013087959.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VirB3 family type IV secretion system protein
translation: MIEEQPPEEYISYNGLGRSPMIWGIPYMVGLVIMSLSLLGGVLIGTFVGGVGWLFSLIGVPMALFVKIICTNDDKAIQILKLEVKWTILKALCGNAKYHGGTMAIAPITYGRKLKNVKRYFKKTVCG
SIO_010081: LPH42_RS11975
subclass of: SO_0000673
so part of: LPH42_RS11975
location: 2863..3246
location: region:2863-3246:1
so has part: feature:2863-3246:1:exon

WP_230428329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2863-3246:1:exon

LPH42_RS11980
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11980
old locus tag: LPH42_11980
so part of: sequence
location: 3209..5623
location: region:3209-5623:1
so has part: feature:3209-5623:1:exon
subclass of: SO_0000010

69683044
type: Gene
SIO_000068: ncbigene

position:3209:1
position: 3209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5623:1
position: 5623
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3209-5623:1:exon

LPH42_RS11980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11980
old locus tag: LPH42_11980
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011799409.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transporter
translation: MLSAILKKQFAGEEQLPPYNYHVRDTIVSLDDGRVAFIIKARGLPFELTSDSVLENQYDELNSLFLSLVKSTGSRLAVWAHIDHYQTEFKTDYKFSYEWMQIFYKKYMDKFEGKAIFENNFYLTFILKPGMNDTLEEGIRELEELQIMVTQTLAQYECEVLSMYEHKGHHFSQFYEFIAYLYNGFLERVPVTSLPLFQAVQTSALYHGYKLIETRFPDGGNRYSAFFDLKDFPEITTRGKFNPLLELPFPFIMCLSFTFINTADSIRLINQALNKMESAGDEATEQMEEMSIGKGSIMSGQVYFGDLHGALAVYGKTEKQTEDRGAIARTTLSGSCATQFVPATLSAPETFFSMFPGNVKRRPRPMPKTTRNFLGLFSMNTYSSGKQYGNPIGDGSAVMPLQTAVHGVYHLNFHYSLPGIDSRGEKNAGHAIITGATGVGKTTVQTTSLAFLNRMDNKVFAVDKDGSMRGFIEASGGTYFRLASGEPTGLNPFQLPDTPQNRTFLYDLVSACARKVGQESTAEDTKDIKQAVDNVFNVNFELRRFRVLLQSIPDRGENCLARRLADWCYAEVDGRYAYALDNPQNNFDWESFKCVGFDVSDFLVAGHPATEPILAYLFHLKTLMQRDGGLLATVIEEFWLPLQYPTTANQILDSLKTGRRRGEFIVLVSQSPEDVIGSPLLPAVLQQTPTKIYLPNPDAEYTTPDGGGYSRFGMTIKEFQKLKKLGLHSRMFMVKQGSQASLVKLDLNGMGDDIAVLAMDAEDFKYLDAAKSQAGTHPDQWVPVYKALRKKGRENVSQPVTVKE
SIO_010081: LPH42_RS11980
subclass of: SO_0000673
so part of: LPH42_RS11980
location: 3209..5623
location: region:3209-5623:1
so has part: feature:3209-5623:1:exon

WP_230428330.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3209-5623:1:exon

LPH42_RS11985
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11985
old locus tag: LPH42_11985
so part of: sequence
location: 5626..6291
location: region:5626-6291:1
so has part: feature:5626-6291:1:exon
subclass of: SO_0000010

69683045
type: Gene
SIO_000068: ncbigene

position:5626:1
position: 5626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6291:1
position: 6291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5626-6291:1:exon

LPH42_RS11985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11985
old locus tag: LPH42_11985
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014607307.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MSFTGILKATKVPISALVFVLAGAAQAQMPVTDSAHISTSIRNQVESLAKWAKQFDQLKQQIYQSQQQYEAITGSRGMGALLDNSALKTALPSDWKQVLSDIKNTKAYATERGKYPTLETFPKTNAMYDVIASQDVIMSDLYSKATRRLSLIQSLTAQIDSANDPAAKADLANRLISEQNAIQANQNLVTILQAKQKQELEVASQAAAEEFSCKEFKRSGC
SIO_010081: LPH42_RS11985
subclass of: SO_0000673
so part of: LPH42_RS11985
location: 5626..6291
location: region:5626-6291:1
so has part: feature:5626-6291:1:exon

WP_230428331.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5626-6291:1:exon

LPH42_RS11990
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11990
old locus tag: LPH42_11990
so part of: sequence
location: 6261..6554
location: region:6261-6554:1
so has part: feature:6261-6554:1:exon
subclass of: SO_0000010

69683046
type: Gene
SIO_000068: ncbigene

position:6261:1
position: 6261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6554:1
position: 6554
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6261-6554:1:exon

LPH42_RS11990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11990
old locus tag: LPH42_11990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014607305.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQRVQTFRLLMVFTVLLMGACSREKVPSTSEYLHDIDSARAMLKLAATDPAKYENDPRWTNASAAIVKLEFLRECWTKPISTATTDHACLDKEGFKR
SIO_010081: LPH42_RS11990
subclass of: SO_0000673
so part of: LPH42_RS11990
location: 6261..6554
location: region:6261-6554:1
so has part: feature:6261-6554:1:exon

WP_230428332.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6261-6554:1:exon

LPH42_RS11995
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS11995
old locus tag: LPH42_11995
so part of: sequence
location: 6558..7574
location: region:6558-7574:1
so has part: feature:6558-7574:1:exon
subclass of: SO_0000010

69683047
type: Gene
SIO_000068: ncbigene

position:6558:1
position: 6558
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7574:1
position: 7574
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6558-7574:1:exon

LPH42_RS11995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS11995
old locus tag: LPH42_11995
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020852259.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MDESAPITWLIGEINKIVSSGADAAASAIATTVTPLASICFGIYILLICMNYMRGAETEPVIDFGLRCAGFAVVIGLGLNAANYTSIVIPIVTGIGSDLASAISGGSATAGTLDQLALHYFNIIEQSYKAVEAVKFPNNIGAMMIYGLKAIFILVGLIPFLVSATLCIIVADVGSVLVAMVGPLYFAFLIFPATRQYFSSWLNTAFSYALMPIFVAVIATISVGLSKKMFSASGSFDDISFKAVFLASMGNLTLLFLLKQVGALASSLSAGGINAFMPGSIGTLANMIRSGLSGSRREIRQGAQAYRTMKAGMKAGAQGARDVVRWIANKFNSMRKAG
SIO_010081: LPH42_RS11995
subclass of: SO_0000673
so part of: LPH42_RS11995
location: 6558..7574
location: region:6558-7574:1
so has part: feature:6558-7574:1:exon

WP_230428333.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6558-7574:1:exon

LPH42_RS12000
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12000
old locus tag: LPH42_12000
so part of: sequence
location: 7578..8297
location: region:7578-8297:1
so has part: feature:7578-8297:1:exon
subclass of: SO_0000010

69683048
type: Gene
SIO_000068: ncbigene

position:7578:1
position: 7578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8297:1
position: 8297
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7578-8297:1:exon

LPH42_RS12000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12000
old locus tag: LPH42_12000
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014607304.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MSTHDKAPVLNQAAKLGRLPQTFMDAAADFEKSKIEEIKRSRKIAWIIAGVATAICSVSILAFLVALLTRSEPEPTILQVDKSTGATTVLRSVRDTKDKYDEVVNKYWLAQYVRTCEGYDWFTINEQYKACNLMSYGDVSKEYSRKVDASGSPLKVLADKGKIVVNITSIAFFGETAQVRFTTEKLSASGENLDHSPVQKWIATIAFEFKPGLMTEQQRLINPLGFKVATYRVDPEVMK
SIO_010081: LPH42_RS12000
subclass of: SO_0000673
so part of: LPH42_RS12000
location: 7578..8297
location: region:7578-8297:1
so has part: feature:7578-8297:1:exon

WP_230428334.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7578-8297:1:exon

LPH42_RS12005
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12005
old locus tag: LPH42_12005
so part of: sequence
location: 8294..9079
location: region:8294-9079:1
so has part: feature:8294-9079:1:exon
subclass of: SO_0000010

69683049
type: Gene
SIO_000068: ncbigene

position:8294:1
position: 8294
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9079:1
position: 9079
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8294-9079:1:exon

LPH42_RS12005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12005
old locus tag: LPH42_12005
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011799405.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbG/VirB9 family P-type conjugative transfer protein
translation: MKKLIALLLACVANAAYANDPRIRTEIYDKSSVYNVHTQIGRASLIQLEDDESLVISPSSVLGIGDAKAWNLGVRGNNIVLKPTEKMPQTNVIVVTNKRTYSFELLTTPKESMPTYILRFRYPDTEAAKAAAEAKRVQMVAASRAEKTVINTDYVWRGDNALLKPTAAYDDGRFTRLVYDHSGELPVFFKVLPDGTEALLNSNVDPEHKQTVVLHEVIRIVRARMGDQVIEIINKAYRLPKFNETGTSVPGAMRVDKSVQP
SIO_010081: LPH42_RS12005
subclass of: SO_0000673
so part of: LPH42_RS12005
location: 8294..9079
location: region:8294-9079:1
so has part: feature:8294-9079:1:exon

WP_230428335.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8294-9079:1:exon

LPH42_RS12010
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
gene: virB10
locus tag: LPH42_RS12010
old locus tag: LPH42_12010
so part of: sequence
location: 9076..10407
location: region:9076-10407:1
so has part: feature:9076-10407:1:exon
subclass of: SO_0000010

69683050
type: Gene
SIO_000068: ncbigene

position:9076:1
position: 9076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10407:1
position: 10407
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9076-10407:1:exon

LPH42_RS12010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
gene: virB10
locus tag: LPH42_RS12010
old locus tag: LPH42_12010
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020852262.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein VirB10
translation: MSKTIDVSNSGALPTLDAKTHVLGAPTSYTKSKTNVGKFFILGLVLLAFLFVVAGLLFYQKYKSAHASVETVNKSEPVKPEFAANNAAFDSDSIEKKKEEIKKKQEQEQAQIKAIEEAQAQAKAQAEAQAAADAAKRAQGVSGQAPQGNQPPPSLTPMERKMAGGVLLENTGAKPKDDAKDKDDAPLSEKEQQQREVQARMAAMGLNQGGGQGFTPVDQSVSADGLAARLQPTVLQARSAGKLPNLNYLLKRGTSIPCALKTGIDTTLPGFVMCNVLNNVYSANGKVLLIERGATVFGEQQSQLKQGQERTFVVWTRIDNPNGVFANIDSPATDQMGYSGIPGYVDTHFWQRFGGAIMLSLIKDFSQAYSQRVANRSNTGNSGATVTVTQPYANTTQATQDMAAEALRNSINIPPTLVVLPATTVNVMVARDVSFENVFNLVE
SIO_010081: LPH42_RS12010
subclass of: SO_0000673
so part of: LPH42_RS12010
location: 9076..10407
location: region:9076-10407:1
so has part: feature:9076-10407:1:exon

WP_230428336.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9076-10407:1:exon

LPH42_RS12015
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
gene: virB11
locus tag: LPH42_RS12015
old locus tag: LPH42_12015
so part of: sequence
location: 10385..11428
location: region:10385-11428:1
so has part: feature:10385-11428:1:exon
subclass of: SO_0000010

69683051
type: Gene
SIO_000068: ncbigene

position:10385:1
position: 10385
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11428:1
position: 11428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10385-11428:1:exon

LPH42_RS12015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
gene: virB11
locus tag: LPH42_RS12015
old locus tag: LPH42_12015
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020852263.1
GO component: GO:0043684 - type IV secretion system complex [Evidence IEA]
GO process: GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type DNA transfer ATPase VirB11
translation: MSSTLLNEMPSHSISDFDRSLSVRELMRESGISEALKANLTDFAINKPGSYWIEDSAGWREIPNEALSLRNLKGLATAIAVFNKKKLDNDHPIESLTLPDGERCQIVLPPACEDGTVSMTIRKPSSSRFSLANYADSGRLKPMLAKLSDEIQPWEAELLQLAKKSDFVRFFELAVEHRLNIVTVGGTGSGKTTFSKCLIDLYPASRRLFTIEDTHELTTPKHPNSVHLFFSQTITAKAVLSSCMRMKPDHIFITELRGDETWDYLMALKSGHSGSVTSIHANDCRGALYKIGSYIKQSEVGQKLDFDYIMQEVMTTIDVVIFFDRTYLKELYFDPVKKLKLLREAAS
SIO_010081: LPH42_RS12015
subclass of: SO_0000673
so part of: LPH42_RS12015
location: 10385..11428
location: region:10385-11428:1
so has part: feature:10385-11428:1:exon

WP_230428337.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10385-11428:1:exon

LPH42_RS12020
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12020
old locus tag: LPH42_12020
so part of: sequence
location: 11425..13701
location: region:11425-13701:1
so has part: feature:11425-13701:1:exon
subclass of: SO_0000010

69683052
type: Gene
SIO_000068: ncbigene

position:11425:1
position: 11425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13701:1
position: 13701
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11425-13701:1:exon

LPH42_RS12020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12020
old locus tag: LPH42_12020
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020852264.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MNKKKIAIAVLVLLLLAVASVLGMLYVSSGLLVKYLSLGDVTPHLSLPFDLAKFGAKKEKGFGVIALVASVGLPVVLFGMVGYAALAPKKRELHGSARFATRRELIKSGLLQPDQPDDKYPSIIVGKQDKDFLLFRGQQFMFLAAPTRSGKGVGIVIPNLLHYRDSVVVLDIKGENFDITSGFRAQCGQEVHKFAPDDENFQTACWNPLGYVRNDPRFRISDLMSITTILYPPSDDVWASTAESLFLGLALYIMDTSKLHGSFNVATIKKMRVSLGCLKDEDTFMAHVKERKPFEPLSEDCITHLRSFAQTSDKLRNSIGISFDQPLGIFSDPITAKATASNSFDMRDVRKKRMSIYVVIKPGKLDKFGKFLNLFFQQLLVLNMEKMPQDDRSLKYQCLLLLDEFPAMGRIAMIEKASAYMAGYNMRLLLIFQSKSQIKDRKLYDETGAQTMLSNMALQVVYAPRDDDDAKDYSEMIGYMTEKGLSKSRQLGAKSGRSESESDQRRAVLLPQEVKAIGMAKAIISMENMPPAFVDKIFWYQEPIFQARANLPPPAVPDQSELVNTIEPAPPSPALHFAGAIEEQALPSGATFEVGFSPKRNALEVVMSFVLSAKTELLVAAYSFTSKEIAFALVEVKARGIDVRVVVDHAQNTDDQGGYKAVDYLSSQGIPVFRCDNYAAMHHKFMVADGLHVQIGSFNYTSSANLRNAETAIAFRNAAELANVYRTEWLRLSTEPKASVETVMAVDRGLAILKEFGI
SIO_010081: LPH42_RS12020
subclass of: SO_0000673
so part of: LPH42_RS12020
location: 11425..13701
location: region:11425-13701:1
so has part: feature:11425-13701:1:exon

WP_230428338.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11425-13701:1:exon

LPH42_RS12025
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12025
old locus tag: LPH42_12025
so part of: sequence
location: 13714..14823
location: region:13714-14823:1
so has part: feature:13714-14823:1:exon
subclass of: SO_0000010

69683053
type: Gene
SIO_000068: ncbigene

position:13714:1
position: 13714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14823:1
position: 14823
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13714-14823:1:exon

LPH42_RS12025
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12025
old locus tag: LPH42_12025
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011799401.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LPD7 domain-containing protein
translation: MTTIPKASDADLRHRLRGEPGVTPEDTRSELLQDGQSKVLRNNLRGEPGVSPEDTYSELLAAKAKEDHKVQESKSAVTQTTEEQNEAVDKALKAQLEDDLRRRKAREQEQAGQGLNSVDVQRSGKELERGDFIMPRRITQAYTEVDGKFYAKDSNRVMFEDKGDKLATSTTNKEAVADMVAYAKAKQWDSLKLSGSQEFRREAWLQAESQGIKTQGYTPKQSDLSALETLRQERSTNAITPLQERKAERDTVRKDAAPAAPRHDINKNQAAMHVEASKFITTNMQALQKQPGMAEKSVEDLTKLAYWRGIVAEENKLQPKAVKDEAMARFDKQAVDPQFLKRLNQETEPKIHDKTTERVQQRETQEQSL
SIO_010081: LPH42_RS12025
subclass of: SO_0000673
so part of: LPH42_RS12025
location: 13714..14823
location: region:13714-14823:1
so has part: feature:13714-14823:1:exon

WP_230428339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13714-14823:1:exon

LPH42_RS12030
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12030
old locus tag: LPH42_12030
so part of: sequence
location: 14823..15347
location: region:14823-15347:1
so has part: feature:14823-15347:1:exon
subclass of: SO_0000010

69683054
type: Gene
SIO_000068: ncbigene

position:15347:1
position: 15347
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14823-15347:1:exon

LPH42_RS12030
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12030
old locus tag: LPH42_12030
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDAPITDLTQVAGTDVRPPYRVFALSWLAYIRPFVVLVCFGMVCGLTAAFSPLAGKVMLLAALAFFVYQVLYIHSIKLFTHDDGVWVYRGVFPWHKGIYGVKWRYLNEATFQQGFISWMFKSYRITLTNRYTTNNEIILAHVKNGHEAATHINELHLAKLQANDVPRNEIAQA
SIO_010081: LPH42_RS12030
subclass of: SO_0000673
so part of: LPH42_RS12030
location: 14823..15347
location: region:14823-15347:1
so has part: feature:14823-15347:1:exon

WP_230428340.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14823-15347:1:exon

LPH42_RS12035
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12035
old locus tag: LPH42_12035
so part of: sequence
location: 15344..15679
location: region:15344-15679:1
so has part: feature:15344-15679:1:exon
subclass of: SO_0000010

69683055
type: Gene
SIO_000068: ncbigene

position:15344:1
position: 15344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15679:1
position: 15679
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15344-15679:1:exon

LPH42_RS12035
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12035
old locus tag: LPH42_12035
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNNQVDSLKTKAKRAVLATAMLASMAGCASTTHYYSASDYRGIRVGDARVTSGVSVEVSPSGVSVIPRVRYYLPRTTRQHVNMLERYSFSVPEAVVSGELRPLHRRNESEP
SIO_010081: LPH42_RS12035
subclass of: SO_0000673
so part of: LPH42_RS12035
location: 15344..15679
location: region:15344-15679:1
so has part: feature:15344-15679:1:exon

WP_230428342.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15344-15679:1:exon

LPH42_RS12040
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12040
old locus tag: LPH42_12040
so part of: sequence
location: 15633..16037
location: region:15633-16037:1
so has part: feature:15633-16037:1:exon
subclass of: SO_0000010

69683056
type: Gene
SIO_000068: ncbigene

position:15633:1
position: 15633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16037:1
position: 16037
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15633-16037:1:exon

LPH42_RS12040
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12040
old locus tag: LPH42_12040
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MANCARCTAETNPNHKALSRFTVPVLPELQAIFLTQDKESKTMYIIEITKKFFVFLLGFYAFFTLSFACMALADPGTRLVRSLGCFDSYDWTESYLLNVQSEPLFFAVISGAILTIYMLCAAISFWRNYQGRTT
SIO_010081: LPH42_RS12040
subclass of: SO_0000673
so part of: LPH42_RS12040
location: 15633..16037
location: region:15633-16037:1
so has part: feature:15633-16037:1:exon

WP_230428341.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15633-16037:1:exon

LPH42_RS12045
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12045
old locus tag: LPH42_12045
so part of: sequence
location: 16626..16922
location: region:16626-16922:1
so has part: feature:16626-16922:1:exon
subclass of: SO_0000010

69683057
type: Gene
SIO_000068: ncbigene

position:16626:1
position: 16626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16922:1
position: 16922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16626-16922:1:exon

LPH42_RS12045
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12045
old locus tag: LPH42_12045
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLDDANSVTHVMTGVRVFATGDLEDENDTSEELEVLYPGGYKISVNGSLFLKIAIKEGAEIEINTIPNDFSIPKGEQTPVQLRISDLEEHLKHKHSLS
SIO_010081: LPH42_RS12045
subclass of: SO_0000673
so part of: LPH42_RS12045
location: 16626..16922
location: region:16626-16922:1
so has part: feature:16626-16922:1:exon

WP_230428302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16626-16922:1:exon

LPH42_RS12050
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12050
old locus tag: LPH42_12050
so part of: sequence
location: complement(16982..17629)
location: region:16982-17629:-1
so has part: feature:16982-17629:-1:exon
subclass of: SO_0000010

69683058
type: Gene
SIO_000068: ncbigene

position:16982:-1
position: 16982
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17629:-1
position: 17629
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16982-17629:-1:exon

LPH42_RS12050
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12050
old locus tag: LPH42_12050
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014607482.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIDTIVKVTLFAALMFAAHASGAPMNTTHTDDTKHSASDKSSAQLKDIAAQLIAMGEQDQADRKLVMSPGFDNHALYTADLKRQQQLKRLTEGRGLFRLSEVGQDAVTSEYLIIQHSEPAFMKGFEKEMGELAAKGDLPKDDYATFVDRILIYENKPQRYGTQANGDFELYPIEDEQSVDKRRASMGLPPLQVLLNKLEKVKQSVRNGKGLGLGK
SIO_010081: LPH42_RS12050
subclass of: SO_0000673
so part of: LPH42_RS12050
location: complement(16982..17629)
location: region:16982-17629:-1
so has part: feature:16982-17629:-1:exon

WP_230428303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16982-17629:-1:exon

LPH42_RS12055
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12055
old locus tag: LPH42_12055
so part of: sequence
location: complement(17626..18735)
location: region:17626-18735:-1
so has part: feature:17626-18735:-1:exon
subclass of: SO_0000010

69683059
type: Gene
SIO_000068: ncbigene

position:17626:-1
position: 17626
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18735:-1
position: 18735
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17626-18735:-1:exon

LPH42_RS12055
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12055
old locus tag: LPH42_12055
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MITIVSSNFDLHAAAIVWSLNKAGIPAAIAETFFGLDQHGGDFMLCEADPIDLGQCRLGQDDKGTGLTYFRSEYTPRVDVDDSDEDFVFMRREKALYQTWLLQAIEDEPLRRFVNKPSQAIRADNKIIQLRAARRSGFAIPPTYFGAHSEQVSDMFQTRQSIVVKPLEPFTWRYADGRTKYAFAARSDVTAINKSYEKRLMPAPAIFQAEILKEQDIRALVFGEEIHAFRITQTSGHLDFREDLSDPGVTSIEYMDLPTRITDQVFDLMRRMNIDVACMDIVPDLEGNFHFLDLNPSGNWLFLEAHAPESLLSRFCTYLALQAGAALQADPPSYVDYKNSIEFAQWRSELKSKGAPYTSSQRNDIWVEK
SIO_010081: LPH42_RS12055
subclass of: SO_0000673
so part of: LPH42_RS12055
location: complement(17626..18735)
location: region:17626-18735:-1
so has part: feature:17626-18735:-1:exon

WP_230428304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17626-18735:-1:exon

LPH42_RS12060
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12060
old locus tag: LPH42_12060
so part of: sequence
location: complement(18794..19018)
location: region:18794-19018:-1
so has part: feature:18794-19018:-1:exon
subclass of: SO_0000010

69683060
type: Gene
SIO_000068: ncbigene

position:18794:-1
position: 18794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19018:-1
position: 19018
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18794-19018:-1:exon

LPH42_RS12060
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12060
old locus tag: LPH42_12060
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTKAITKELAREFAPSSMRDLTETEMNLVSGAVHSNNDVRPQGNVEGEVTVTHTFGGGAGMDISVKIEVTTGN
SIO_010081: LPH42_RS12060
subclass of: SO_0000673
so part of: LPH42_RS12060
location: complement(18794..19018)
location: region:18794-19018:-1
so has part: feature:18794-19018:-1:exon

WP_230428305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18794-19018:-1:exon

LPH42_RS12065
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12065
old locus tag: LPH42_12065
so part of: sequence
location: complement(19345..20382)
location: region:19345-20382:-1
so has part: feature:19345-20382:-1:exon
subclass of: SO_0000010

69683061
type: Gene
SIO_000068: ncbigene

position:19345:-1
position: 19345
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20382:-1
position: 20382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19345-20382:-1:exon

LPH42_RS12065
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12065
old locus tag: LPH42_12065
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010895227.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKIRLAPLSLFLFIPIAFANSGVDNQDPEQRFIIDTPTSPLSTQESAEKYWTEERMRTAKPMPMPIVSTEELSRIEAEARFESSMRNNRKEKQQVLVIEPSPVEWEAEGKSDSFPIINANAVEGVPEEADVDQRPFWNAGRLYFTTSTGDYMCTAEFVGSNQILMTAAHCLMDDNGNWHTNIVFAPRYRGGKRFKNSGTGCKSVPSNYITKDGINHVADYGFITSNRSGPGWLGLKIRIPYTKWTAIGYPDNYKGGRHLMRVDGSKGSSYENDTVQMLNNPMGEGSSGGAWIAEVNTSNSVGGNYAIGLNSFSSPGDRNTTYGPYFNQYTFDIFNKVKKDCNIK
SIO_010081: LPH42_RS12065
subclass of: SO_0000673
so part of: LPH42_RS12065
location: complement(19345..20382)
location: region:19345-20382:-1
so has part: feature:19345-20382:-1:exon

WP_230428306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19345-20382:-1:exon

LPH42_RS12070
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12070
old locus tag: LPH42_12070
so part of: sequence
location: 20906..21205
location: region:20906-21205:1
so has part: feature:20906-21205:1:exon
subclass of: SO_0000010

69683062
type: Gene
SIO_000068: ncbigene

position:20906:1
position: 20906
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21205:1
position: 21205
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20906-21205:1:exon

LPH42_RS12070
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12070
old locus tag: LPH42_12070
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNDQWNIFVIFTDTENNIFLTLGGAGWETKAEWEDEWNRIPESPFGSGDSSMLMLEKIDENGYQTDDRPITAETAEILLGKPIDVLIEAARSSLQKQQ
SIO_010081: LPH42_RS12070
subclass of: SO_0000673
so part of: LPH42_RS12070
location: 20906..21205
location: region:20906-21205:1
so has part: feature:20906-21205:1:exon

WP_230428307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20906-21205:1:exon

LPH42_RS12075
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12075
old locus tag: LPH42_12075
so part of: sequence
location: 21220..21582
location: region:21220-21582:1
so has part: feature:21220-21582:1:exon
subclass of: SO_0000010

69683063
type: Gene
SIO_000068: ncbigene

position:21220:1
position: 21220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21582:1
position: 21582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21220-21582:1:exon

LPH42_RS12075
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12075
old locus tag: LPH42_12075
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004086687.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQSVLPKISDTDLADMFKKPVPPQDEEIAALKRLVAIAKRGTHQSGHVADFLLSWWNTDECGGFDMRNLWGVDRRIAEDMVTVFGLVARIHVYPPQIDRVFDADFDQIVRLWRPKLFADA
SIO_010081: LPH42_RS12075
subclass of: SO_0000673
so part of: LPH42_RS12075
location: 21220..21582
location: region:21220-21582:1
so has part: feature:21220-21582:1:exon

WP_230428308.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21220-21582:1:exon

LPH42_RS12080
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12080
old locus tag: LPH42_12080
so part of: sequence
location: 21575..22183
location: region:21575-22183:1
so has part: feature:21575-22183:1:exon
subclass of: SO_0000010

69683064
type: Gene
SIO_000068: ncbigene

position:21575:1
position: 21575
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22183:1
position: 22183
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21575-22183:1:exon

LPH42_RS12080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12080
old locus tag: LPH42_12080
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008316971.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MRDPNDVATLDMAISTLIGYARVSTTEQNLAMQTEALEKAGCLRVFTDVASGVKAARPGLDEALAYLRSGDTLVVWKIDRLGRSLSHLVHTVEGLRDRGVFFRSLNDPGMDTTSTNGKLLFNLFATLADFERELIRERTKAGLASAKARGRSAGRRPVITTAKLDKAIKLIHKGLTVRDAAAAIKVGKSALYAALRIPSAPS
SIO_010081: LPH42_RS12080
subclass of: SO_0000673
so part of: LPH42_RS12080
location: 21575..22183
location: region:21575-22183:1
so has part: feature:21575-22183:1:exon

WP_230428309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21575-22183:1:exon

LPH42_RS12085
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12085
old locus tag: LPH42_12085
so part of: sequence
location: complement(22670..23803)
location: region:22670-23803:-1
so has part: feature:22670-23803:-1:exon
subclass of: SO_0000010

69683065
type: Gene
SIO_000068: ncbigene

position:22670:-1
position: 22670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:23803:-1
position: 23803
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22670-23803:-1:exon

LPH42_RS12085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12085
old locus tag: LPH42_12085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011799400.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MSAFDPLDGWFEKGFRVRVQKSARTAKRDQARARSGTSLSSTSGLKFSANAKAKNTVSVIRKAPEVMVKITGSSSGLNTVKHHLDYISRNGQIELTNESGETIQGRDELKALREQMKASQVPNESNKREYLHVLFSMPPGTPEKAMREAVMQFCQEEFANRRYVAALHDDTDHTHVHVCVSTRDIDRADEPRLSPRKADLFRWRQGFADKLRENGIDAAASERRHRFNHRKPEHPVVRQIRAENPKSDVYNERRAKEKALDRAMKAIKRPETASVGPLRPPRVPKVYEALKSELQAALKAGVRPINPAEAKISETKAQTLASWGQVAKNLESTEQTDLAKSVTAFIRDADKSTSSRTQELFDLAKARGKSKDIGQEL
SIO_010081: LPH42_RS12085
subclass of: SO_0000673
so part of: LPH42_RS12085
location: complement(22670..23803)
location: region:22670-23803:-1
so has part: feature:22670-23803:-1:exon

WP_230428310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22670-23803:-1:exon

LPH42_RS12090
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12090
old locus tag: LPH42_12090
so part of: sequence
location: complement(23819..24919)
location: region:23819-24919:-1
so has part: feature:23819-24919:-1:exon
subclass of: SO_0000010

69683066
type: Gene
SIO_000068: ncbigene

position:23819:-1
position: 23819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:24919:-1
position: 24919
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23819-24919:-1:exon

LPH42_RS12090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12090
old locus tag: LPH42_12090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011799399.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zeta toxin family protein
translation: MVDYKPLTDSEVMDTAVAYYTERQAKSLAKERPTIVFVGGQPGAGKSIASSIVKAELAMQGGYVHIDADRMRERIRVGDSTPTSEETQADAGRLVTALRDQAIQGRRNIVEEGTFRNPESAEKFVQALLENGYNVELFAVATSGEESLLGIYQRYELQHVAGVPNPRFVSEKYHEEAMQGFESTLARTAVQFDRVRVADRSGAVLYDSVIQSNKQLNALEALAAGRKLTDTKLAEVTKAWSAVDAIAHQRNALSSYLDAVSGHLHRLEEMQKERIHCHAMDQVEANAAMLARDARYAHHTRGELTKAAYFRGFHEKKSEFEGVAPDFAKYDATVASRQTLRQLPDVADLERQVMPAIHRINDGNSL
SIO_010081: LPH42_RS12090
subclass of: SO_0000673
so part of: LPH42_RS12090
location: complement(23819..24919)
location: region:23819-24919:-1
so has part: feature:23819-24919:-1:exon

WP_230428311.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23819-24919:-1:exon

LPH42_RS12095
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12095
old locus tag: LPH42_12095
so part of: sequence
location: complement(24925..25185)
location: region:24925-25185:-1
so has part: feature:24925-25185:-1:exon
subclass of: SO_0000010

69683067
type: Gene
SIO_000068: ncbigene

position:24925:-1
position: 24925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25185:-1
position: 25185
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24925-25185:-1:exon

LPH42_RS12095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12095
old locus tag: LPH42_12095
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014607322.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: antitoxin
translation: MLDLGINSGSISYEVALEVLGQRRQPFMQAIYEEKQKPVPSQAFIRYCENRLAALDELQETLQPTDLTTIERIITKGESDIAFKVQ
SIO_010081: LPH42_RS12095
subclass of: SO_0000673
so part of: LPH42_RS12095
location: complement(24925..25185)
location: region:24925-25185:-1
so has part: feature:24925-25185:-1:exon

WP_230428312.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24925-25185:-1:exon

LPH42_RS12100
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
gene: mobC
locus tag: LPH42_RS12100
old locus tag: LPH42_12100
so part of: sequence
location: complement(25204..25785)
location: region:25204-25785:-1
so has part: feature:25204-25785:-1:exon
subclass of: SO_0000010

69683068
type: Gene
SIO_000068: ncbigene

position:25204:-1
position: 25204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:25785:-1
position: 25785
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25204-25785:-1:exon

LPH42_RS12100
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
gene: mobC
locus tag: LPH42_RS12100
old locus tag: LPH42_12100
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011799437.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MVAGRDMLRVDGVSPETKKRLQEAAMQLYGKPNASLLVRSLIAGHLSKSEGNTKPLTAANAGDTVRVELRLPRTALEQVNDLAEGRFSTRNYYLTSVILAHLGQPQLHGDEIEVLRRSNYELAKVGTNLNQVAKAFNTLVKMRGGEKLPEVGKKIASLRREIKEHTGKVLRILEMGTVVWEAKGGGQRSRKRK
SIO_010081: LPH42_RS12100
subclass of: SO_0000673
so part of: LPH42_RS12100
location: complement(25204..25785)
location: region:25204-25785:-1
so has part: feature:25204-25785:-1:exon

WP_230428313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25204-25785:-1:exon

LPH42_RS12105
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12105
old locus tag: LPH42_12105
so part of: sequence
location: 26193..26453
location: region:26193-26453:1
so has part: feature:26193-26453:1:exon
subclass of: SO_0000010

69683069
type: Gene
SIO_000068: ncbigene

position:26193:1
position: 26193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26453:1
position: 26453
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26193-26453:1:exon

LPH42_RS12105
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12105
old locus tag: LPH42_12105
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAELKAKGYETTLKGFRNLLYRARIRAAQNPEEFITKIEQKNDQKDSKQLANKSEIKKEEISQNPLKKKAGFEFKGTNSFDESDLI
SIO_010081: LPH42_RS12105
subclass of: SO_0000673
so part of: LPH42_RS12105
location: 26193..26453
location: region:26193-26453:1
so has part: feature:26193-26453:1:exon

WP_230428314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26193-26453:1:exon

LPH42_RS12110
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12110
old locus tag: LPH42_12110
so part of: sequence
location: 26466..27218
location: region:26466-27218:1
so has part: feature:26466-27218:1:exon
subclass of: SO_0000010

69683070
type: Gene
SIO_000068: ncbigene

position:26466:1
position: 26466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27218:1
position: 27218
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26466-27218:1:exon

LPH42_RS12110
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12110
old locus tag: LPH42_12110
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020852243.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraL
translation: MSSKQVRKSTNNSIHFTLQGKGGVGKSLVSSLLAQYFNTIDGCTVKCVDTDPVNQTLSNYKALNAQHIQLMNGSKINERNFDHLMERLMTEEGIFVVDNGASSFVPLSNYLIENNAISMLQESGRNVFIHSVLTGGQALMDTLAGFKSLAEQADTKNIVIWLNEYFGAIEANGKTFTEMKVYADNAHKVRGIVRIIERNQDTFGKDMEVMASKKLTFSEVLNGTDFTLMAKQRIKTVQRDLNDQLAAIGF
SIO_010081: LPH42_RS12110
subclass of: SO_0000673
so part of: LPH42_RS12110
location: 26466..27218
location: region:26466-27218:1
so has part: feature:26466-27218:1:exon

WP_230428315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26466-27218:1:exon

LPH42_RS12115
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12115
old locus tag: LPH42_12115
so part of: sequence
location: 27219..27647
location: region:27219-27647:1
so has part: feature:27219-27647:1:exon
subclass of: SO_0000010

69683071
type: Gene
SIO_000068: ncbigene

position:27219:1
position: 27219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27647:1
position: 27647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27219-27647:1:exon

LPH42_RS12115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12115
old locus tag: LPH42_12115
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011799434.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNKRQLIAAIVEKSGIKLTEDDPAFLLVDLNLMMLEKQTSEAAKQLEAATERFNAVTTHNVDDFVAVANEALSKFMQRTNEIKSSLDNLSTKLAQAATVIAAPSAQEETKTSHRSELLWWLLPLIFGVGVLVGVGMAFAVMK
SIO_010081: LPH42_RS12115
subclass of: SO_0000673
so part of: LPH42_RS12115
location: 27219..27647
location: region:27219-27647:1
so has part: feature:27219-27647:1:exon

WP_230428316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27219-27647:1:exon

LPH42_RS12120
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12120
old locus tag: LPH42_12120
so part of: sequence
location: 27754..28962
location: region:27754-28962:1
so has part: feature:27754-28962:1:exon
subclass of: SO_0000010

69683072
type: Gene
SIO_000068: ncbigene

position:27754:1
position: 27754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28962:1
position: 28962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27754-28962:1:exon

LPH42_RS12120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12120
old locus tag: LPH42_12120
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015869975.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MKRLQAFKFQLRPNGQQERDMWRFAGACRFVFNRALALQNESHEAGNKYIPYTKMTSWLIEWKTNPDTQWLKESPSQPLQQSLKDLERGYKNFFQKRAAFPHFKKRGQNDAFRYPQGVKLDQANSRISLPKLGWIRYRNSREIVGEVKNVTVIQSCGQWYVSIQTEYEVVDPIHNAASMVGLDAGVTKLATLSDGTVYQPVNSFKASQRKLAMLQRQSSRKVKFSANWQKQKRKIQRLHSHIANIRRDYLHKVTSEISKNHAMIVIEDLKVSNMSKSAKGTAVQHGRNVRAKSGLNRSILDQGWYEMRRQLEYKQFWLGGQVLAVPAAYTSQRCAFCGHTAKENRLSQSKFVCQECGYTENADVNGARNILAAGHAVLACGGMVQSGRPLKQEPTEASQAPV
SIO_010081: LPH42_RS12120
subclass of: SO_0000673
so part of: LPH42_RS12120
location: 27754..28962
location: region:27754-28962:1
so has part: feature:27754-28962:1:exon

WP_230428317.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27754-28962:1:exon

LPH42_RS12125
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12125
old locus tag: LPH42_12125
so part of: sequence
location: complement(28947..29075)
location: region:28947-29075:-1
so has part: feature:28947-29075:-1:exon
subclass of: SO_0000010

69683073
type: Gene
SIO_000068: ncbigene

position:28947:-1
position: 28947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29075:-1
position: 29075
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28947-29075:-1:exon

LPH42_RS12125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12125
old locus tag: LPH42_12125
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system MqsA family antitoxin
translation: MTMKCPCCGAAELIHDTRDMPYTFDILPALKAGDSYSVQTGA
SIO_010081: LPH42_RS12125
subclass of: SO_0000673
so part of: LPH42_RS12125
location: complement(28947..29075)
location: region:28947-29075:-1
so has part: feature:28947-29075:-1:exon

WP_230428318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28947-29075:-1:exon

LPH42_RS12130
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12130
old locus tag: LPH42_12130
so part of: sequence
location: complement(29151..29663)
location: region:29151-29663:-1
so has part: feature:29151-29663:-1:exon
subclass of: SO_0000010

69683074
type: Gene
SIO_000068: ncbigene

position:29151:-1
position: 29151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29663:-1
position: 29663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29151-29663:-1:exon

LPH42_RS12130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12130
old locus tag: LPH42_12130
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014028384.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family N-acetyltransferase
translation: MNSATFLLAPLDATHNRTAFRSDSEPLNRYLQEQATQDIRRRVAACFVALADGQRIAGYYTLASASLLLADLPASTGKKLPRYPSVPAVRMGRLAVDQAFKGQGLGGALLADALDRAARSEIAAFALMVDAKDEAAAAFYQHHGFIALPDSPLILFLPLAAVSRLLARTR
SIO_010081: LPH42_RS12130
subclass of: SO_0000673
so part of: LPH42_RS12130
location: complement(29151..29663)
location: region:29151-29663:-1
so has part: feature:29151-29663:-1:exon

WP_230428319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29151-29663:-1:exon

LPH42_RS12135
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12135
old locus tag: LPH42_12135
so part of: sequence
location: complement(29660..29944)
location: region:29660-29944:-1
so has part: feature:29660-29944:-1:exon
subclass of: SO_0000010

69683075
type: Gene
SIO_000068: ncbigene

position:29660:-1
position: 29660
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29944:-1
position: 29944
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:29660-29944:-1:exon

LPH42_RS12135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12135
old locus tag: LPH42_12135
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017157756.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1778 domain-containing protein
translation: MPATTISTARLEARISTDLHSMLKRAAELQGRTMTDFVVAAVQDAAQRAIEQAEVIRLSLADQECFAQALLSPPKSATALERAFVRRSKLLRTE
SIO_010081: LPH42_RS12135
subclass of: SO_0000673
so part of: LPH42_RS12135
location: complement(29660..29944)
location: region:29660-29944:-1
so has part: feature:29660-29944:-1:exon

WP_230428320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:29660-29944:-1:exon

LPH42_RS12140
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12140
old locus tag: LPH42_12140
so part of: sequence
location: complement(30690..31775)
location: region:30690-31775:-1
so has part: feature:30690-31775:-1:exon
subclass of: SO_0000010

69683076
type: Gene
SIO_000068: ncbigene

position:30690:-1
position: 30690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:31775:-1
position: 31775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30690-31775:-1:exon

LPH42_RS12140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12140
old locus tag: LPH42_12140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020852248.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein RepA
translation: MSQPPKENNQRRRSSAAADIALAKLRKLKEEHTKQLPQMNEVTDFALASSPATTTETHGKESKQKRTGMTTRESSLVKTAAEIAMERPDDDDRAYMHSIMCQVGLPRSKVEGSSFERVSGAAALLVEAGKLWDGKRFVQQAIPYGPMPRLILAWMNTYAVRFNTPVIPIGDSASEFLRMLGKGSNGGRNGAYTTFRKQVQALSACRMTLGFNANGRAHTYEGKPIKHFDAWLSNKEEQRPLWPGTVSFSDDYYQTLKLHAVPLDLRAYMELKGSALAMDIYIWAAQRLHRIEGRPLVLYWSNLRDQFGQEYTGPEADKNFKKKFLPALRAVLAVYPEARIKQVKGGIMLIASPPPIPFKPS
SIO_010081: LPH42_RS12140
subclass of: SO_0000673
so part of: LPH42_RS12140
location: complement(30690..31775)
location: region:30690-31775:-1
so has part: feature:30690-31775:-1:exon

WP_230428321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30690-31775:-1:exon

LPH42_RS12145
type: Gene
subclass of: SO_0000704
RO_0002162: 1444770
locus tag: LPH42_RS12145
old locus tag: LPH42_12145
pseudo: true
so part of: sequence
location: complement(31759..>32070)
location: region:31759-32070:-1
so has part: feature:31759-32070:-1:exon
subclass of: SO_0000010

69683077
type: Gene
SIO_000068: ncbigene

position:31759:-1
position: 31759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:32070:-1
position: 32070
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:31759-32070:-1:exon

LPH42_RS12145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 1444770
locus tag: LPH42_RS12145
old locus tag: LPH42_12145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015042061.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: LPH42_RS12145
subclass of: SO_0000673
so part of: LPH42_RS12145
location: complement(31759..>32070)
location: region:31759-32070:-1
so has part: feature:31759-32070:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:31759-32070:-1:exon