Nitrosomonas stercoris strain KYUHI-S plasmid plasmid 1, complete sequence.
Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.
Whole-Genome Sequence of the Ammonia-Oxidizing Bacterium Nitrosomonas stercoris Type Strain KYUHI-S, Isolated from Composted Cattle Manure
Microbiol Resour Announc 8 (34), e00742-19 (2019)
DOI:10.1128/MRA.00742-19 Publication Status: Online-Only
Submitted (20-JUN-2019) Contact:Tatsunori Nakagawa Nihon University; Kameino 1866, Fujisawa, Kanagawa 252-0880, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP019756.1.\nAnnotated with Prokka v.1.13\n\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Coverage :: 5240x\nSequencing Technology :: Oxford Nanopore GridION;Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2021 00:35:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 5.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 2,276\nCDSs (total) :: 2,229\nGenes (coding) :: 2,170\nCDSs (with protein) :: 2,170\nGenes (RNA) :: 47\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 40\nncRNAs :: 4\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 26 of 59\nPseudo Genes (incomplete) :: 36 of 59\nPseudo Genes (internal stop) :: 12 of 59\nPseudo Genes (multiple problems) :: 12 of 59\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011630704.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_011630705.1
COORDINATES: protein motif:HMM:NF013618.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011630707.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630708.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011630663.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_011630664.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630665.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630666.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630668.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011630669.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329478.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630671.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630673.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630674.1
COORDINATES: similar to AA sequence:RefSeq:WP_014861255.1
COORDINATES: similar to AA sequence:RefSeq:WP_006319841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008854573.1
COORDINATES: similar to AA sequence:RefSeq:WP_001029679.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
TnsA endonuclease N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001262004.1
COORDINATES: similar to AA sequence:RefSeq:WP_002035231.1
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_000924255.1
COORDINATES: similar to AA sequence:RefSeq:WP_015436905.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018992425.1
putative addiction module antidote protein
COORDINATES: protein motif:HMM:NF019474.1
COORDINATES: protein motif:HMM:NF012568.1
COORDINATES: protein motif:HMM:NF012946.1
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00027.1
COORDINATES: similar to AA sequence:RefSeq:WP_008437132.1
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011479716.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020160044.1
COORDINATES: similar to AA sequence:RefSeq:WP_011077911.1
COORDINATES: similar to AA sequence:RefSeq:WP_003109152.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611301.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004714530.1
COORDINATES: similar to AA sequence:RefSeq:WP_086557936.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011630682.1
COORDINATES: similar to AA sequence:RefSeq:WP_019952437.1
HigA family addiction module antidote protein
COORDINATES: similar to AA sequence:RefSeq:WP_020750543.1
COORDINATES: similar to AA sequence:RefSeq:WP_010445692.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011630686.1
COORDINATES: similar to AA sequence:RefSeq:WP_008937340.1
COORDINATES: similar to AA sequence:RefSeq:WP_008937339.1
COORDINATES: protein motif:HMM:NF020530.1
COORDINATES: similar to AA sequence:RefSeq:WP_011627746.1
Flp pilus assembly complex ATPase component TadA
COORDINATES: similar to AA sequence:RefSeq:WP_011630695.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011630696.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630697.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630698.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_011630699.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630700.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630702.1
COORDINATES: similar to AA sequence:RefSeq:WP_011630703.1
VirB4 family type IV secretion/conjugal transfer ATPase