Streptomyces dangxiongensis strain Z022 plasmid unnamed1.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
The genome of Streptomyces dangxiongensis Z022
Submitted (16-OCT-2018) State Key Laboratory of Cryospheric Sciences, Chinese Academy of Sciences, Donggang West Road 320, Lanzhou, Gansu 730000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP033072.1.\nBacteria and source DNA available from Binglin Zhang.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. version 0.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 213.0x\nSequencing Technology :: Illumina and Pacpio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/22/2023 06:21:16\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,203\nCDSs (total) :: 7,113\nGenes (coding) :: 6,566\nCDSs (with protein) :: 6,566\nGenes (RNA) :: 90\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 69\nncRNAs :: 3\nPseudo Genes (total) :: 547\nCDSs (without protein) :: 547\nPseudo Genes (ambiguous residues) :: 0 of 547\nPseudo Genes (frameshifted) :: 341 of 547\nPseudo Genes (incomplete) :: 281 of 547\nPseudo Genes (internal stop) :: 27 of 547\nPseudo Genes (multiple problems) :: 93 of 547\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##
type strain of Streptomyces dangxiongensis Zhang et al. 2019
COORDINATES: protein motif:HMM:NF017885.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021197.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024947.2
SbcC/MukB-like Walker B domain-containing protein
COORDINATES: protein motif:HMM:NF023224.2
COORDINATES: similar to AA sequence:RefSeq:WP_011605309.1
COORDINATES: similar to AA sequence:RefSeq:WP_011026834.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009332786.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003985161.1
COORDINATES: protein motif:HMM:TIGR03696.1
RHS repeat-associated core domain-containing protein
COORDINATES: protein motif:HMM:NF017411.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01643.1
COORDINATES: protein motif:HMM:NF040127.1
COORDINATES: similar to AA sequence:RefSeq:WP_015608238.1
COORDINATES: protein motif:HMM:NF039695.1
COORDINATES: similar to AA sequence:RefSeq:WP_007024124.1
COORDINATES: similar to AA sequence:RefSeq:WP_010275192.1
COORDINATES: similar to AA sequence:RefSeq:WP_019325207.1
COORDINATES: similar to AA sequence:RefSeq:WP_011027876.1
COORDINATES: similar to AA sequence:RefSeq:WP_006607300.1
COORDINATES: similar to AA sequence:RefSeq:WP_011027290.1
COORDINATES: similar to AA sequence:RefSeq:WP_003995364.1
COORDINATES: similar to AA sequence:RefSeq:WP_018533552.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007389531.1
COORDINATES: similar to AA sequence:RefSeq:WP_006602079.1
COORDINATES: similar to AA sequence:RefSeq:WP_018549263.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954692.1
COORDINATES: similar to AA sequence:RefSeq:WP_006131589.1
polymorphic toxin-type HINT domain-containing protein
COORDINATES: protein motif:HMM:NF024777.2
LamG-like jellyroll fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011026846.1
COORDINATES: similar to AA sequence:RefSeq:WP_003954207.1
COORDINATES: similar to AA sequence:RefSeq:WP_020548426.1
COORDINATES: similar to AA sequence:RefSeq:WP_017944396.1
COORDINATES: protein motif:HMM:NF012792.2
COORDINATES: similar to AA sequence:RefSeq:WP_015575414.1
helix-turn-helix domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007387255.1
COORDINATES: similar to AA sequence:RefSeq:WP_010471577.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004983215.1
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_010040961.1