Athalassotoga saccharophila strain NAS-01 plasmid pATS1, complete sequence.
Bacteria; Thermotogota; Thermotogae; Mesoaciditogales; Mesoaciditogaceae; Athalassotoga.
Complete Genome Sequence of Athalassotoga saccharophila Strain NAS-01, a Deep-Branching Thermophilic Lineage in the Phylum Thermotogae
Microbiol Resour Announc 9 (16), e00322-20 (2020)
DOI:10.1128/MRA.00322-20 Publication Status: Online-Only
Submitted (02-APR-2019) Contact:Shingo Kato RIKEN BioResource Research Center, Japan Collection of Microorganisms; 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP019552.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Coverage :: 500x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 03:01:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,024\nCDSs (total) :: 1,967\nGenes (coding) :: 1,960\nCDSs (with protein) :: 1,960\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 7\nCDSs (without protein) :: 7\nPseudo Genes (ambiguous residues) :: 0 of 7\nPseudo Genes (frameshifted) :: 0 of 7\nPseudo Genes (incomplete) :: 6 of 7\nPseudo Genes (internal stop) :: 2 of 7\nPseudo Genes (multiple problems) :: 1 of 7\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Athalassotoga saccharophila
COORDINATES: protein motif:HMM:NF013235.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_004301241.1
COORDINATES: similar to AA sequence:RefSeq:WP_004103489.1
GO:0006378 - mRNA polyadenylation [Evidence IEA]; GO:0016070 - RNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017243.2
COORDINATES: protein motif:HMM:NF024252.2
helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF021106.2
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: similar to AA sequence:RefSeq:WP_015283703.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024980.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF033559.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015283193.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF025679.2
COORDINATES: protein motif:HMM:NF023857.2
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF013561.2
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011020875.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:NF013828.2
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:NF022077.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]