Athalassotoga saccharophila strain NAS-01 chromosome, ribosomal protein l10 leader region.
Bacteria; Thermotogota; Thermotogae; Mesoaciditogales; Mesoaciditogaceae; Athalassotoga.
Complete Genome Sequence of Athalassotoga saccharophila Strain NAS-01, a Deep-Branching Thermophilic Lineage in the Phylum Thermotogae
Microbiol Resour Announc 9 (16), e00322-20 (2020)
DOI:10.1128/MRA.00322-20 Publication Status: Online-Only
Submitted (02-APR-2019) Contact:Shingo Kato RIKEN BioResource Research Center, Japan Collection of Microorganisms; 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP019551.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Coverage :: 500x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/27/2022 03:01:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,024\nCDSs (total) :: 1,967\nGenes (coding) :: 1,960\nCDSs (with protein) :: 1,960\nGenes (RNA) :: 57\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 3\nPseudo Genes (total) :: 7\nCDSs (without protein) :: 7\nPseudo Genes (ambiguous residues) :: 0 of 7\nPseudo Genes (frameshifted) :: 0 of 7\nPseudo Genes (incomplete) :: 6 of 7\nPseudo Genes (internal stop) :: 2 of 7\nPseudo Genes (multiple problems) :: 1 of 7\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Athalassotoga saccharophila
COORDINATES: protein motif:HMM:TIGR00362.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: protein motif:HMM:NF014447.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF012706.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF012925.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012742.2
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF012234.2
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012766.2
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:NF027890.2
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF028518.2
GO:0006378 - mRNA polyadenylation [Evidence IEA]; GO:0016070 - RNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012799.2
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF015084.2
COORDINATES: protein motif:HMM:NF014575.2
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
GO:0006364 - rRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: protein motif:HMM:NF012492.2
COORDINATES: protein motif:HMM:NF013327.2
COORDINATES: protein motif:HMM:TIGR00055.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016290541.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02075.1
GO:0033862 - UMP kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:NF013085.2
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:TIGR02605.1
COORDINATES: protein motif:HMM:NF010047.0
GO:0010181 - FMN binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0003959 - NADPH dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014605.2
COORDINATES: protein motif:HMM:TIGR00236.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:NF024918.2
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF010480.0
GO:0071949 - FAD binding [Evidence IEA]; GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:TIGR01647.1
plasma-membrane proton-efflux P-type ATPase
COORDINATES: protein motif:HMM:NF013116.2
COORDINATES: protein motif:HMM:NF012589.2
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF016314.2
COORDINATES: protein motif:HMM:NF004018.0
GO:0004849 - uridine kinase activity [Evidence IEA]
GO:0046108 - uridine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03506.1
COORDINATES: protein motif:HMM:TIGR02488.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03170.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: protein motif:HMM:NF014195.2
flagellar basal body L-ring protein FlgH
COORDINATES: protein motif:HMM:NF014206.2
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
flagellar basal body P-ring protein FlgI
COORDINATES: protein motif:HMM:NF021445.2
phosphatidylglycerol lysyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF013791.2
COORDINATES: protein motif:HMM:NF014386.2
cytochrome d ubiquinol oxidase subunit II
COORDINATES: protein motif:HMM:NF013429.2
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:NF013776.2
COORDINATES: protein motif:HMM:TIGR02104.1
GO:0051060 - pullulanase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017631298.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00875.1
GO:0016832 - aldehyde-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00059.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF003519.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: protein motif:HMM:NF003717.0
GO:0015935 - small ribosomal subunit [Evidence IEA]
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003130556.1
COORDINATES: similar to AA sequence:RefSeq:WP_003128035.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020322760.1
COORDINATES: similar to AA sequence:RefSeq:WP_017201569.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00500.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001386.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0019205 - nucleobase-containing compound kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00967.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016911111.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001085235.1
COORDINATES: similar to AA sequence:RefSeq:WP_002063426.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006784446.1
COORDINATES: similar to AA sequence:RefSeq:WP_017722933.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009754342.1
COORDINATES: similar to AA sequence:RefSeq:WP_011245027.1
COORDINATES: similar to AA sequence:RefSeq:WP_018376779.1
COORDINATES: protein motif:HMM:TIGR01079.1
COORDINATES: similar to AA sequence:RefSeq:WP_007073026.1
COORDINATES: similar to AA sequence:RefSeq:WP_004929760.1
COORDINATES: similar to AA sequence:RefSeq:WP_018590375.1
COORDINATES: similar to AA sequence:RefSeq:WP_001829782.1
COORDINATES: protein motif:HMM:TIGR01009.1
COORDINATES: similar to AA sequence:RefSeq:WP_000447526.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004924105.1
COORDINATES: similar to AA sequence:RefSeq:WP_002506966.1
COORDINATES: protein motif:HMM:TIGR03953.1
COORDINATES: similar to AA sequence:RefSeq:WP_016293507.1
COORDINATES: similar to AA sequence:RefSeq:WP_012084982.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001040566.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003270.1
COORDINATES: similar to AA sequence:RefSeq:WP_011929565.1
COORDINATES: similar to AA sequence:RefSeq:WP_003225781.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF027579.2
COORDINATES: protein motif:HMM:NF001965.0
chemotaxis response regulator protein-glutamate methylesterase
COORDINATES: protein motif:HMM:NF013391.2
COORDINATES: protein motif:HMM:NF013707.2
GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]
2-oxoacid:acceptor oxidoreductase family protein
COORDINATES: protein motif:HMM:NF014794.2
2-oxoacid:ferredoxin oxidoreductase subunit beta
COORDINATES: protein motif:HMM:TIGR03598.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
ribosome biogenesis GTP-binding protein YihA/YsxC
COORDINATES: protein motif:HMM:TIGR00763.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00150.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:NF041096.1
GO:0052689 - carboxylic ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: protein motif:HMM:NF014647.2
BMP family ABC transporter substrate-binding protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00167
purine riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013702.2
GO:0016746 - acyltransferase activity [Evidence IEA]
1-acyl-sn-glycerol-3-phosphate acyltransferase
COORDINATES: protein motif:HMM:NF019318.2
COORDINATES: protein motif:HMM:TIGR00043.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024579.2
COORDINATES: protein motif:HMM:NF012568.2
COORDINATES: protein motif:HMM:NF014618.2
COORDINATES: protein motif:HMM:TIGR00530.1
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:NF002010.0
COORDINATES: protein motif:HMM:TIGR03330.1
GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01402.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01400.1
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00328.1
COORDINATES: protein motif:HMM:TIGR01398.1
COORDINATES: protein motif:HMM:NF012662.2
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF018894.2
GO:0035438 - cyclic-di-GMP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF041093.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF041119.1
GO:0008984 - protein-glutamate methylesterase activity [Evidence IEA]; GO:0050568 - protein-glutamine glutaminase activity [Evidence IEA]
chemoreceptor glutamine deamidase/glutamate methylesterase CheD
COORDINATES: protein motif:HMM:NF005413.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
FliA/WhiG family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:TIGR00580.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025010.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003792.0
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01460.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00179.1
GO:0008762 - UDP-N-acetylmuramate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01182.1
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_002415999.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002938050.1
COORDINATES: protein motif:HMM:NF012551.2
COORDINATES: protein motif:HMM:NF013672.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: protein motif:HMM:NF019130.2
GO:0046559 - alpha-glucuronidase activity [Evidence IEA]
GO:0045493 - xylan catabolic process [Evidence IEA]
alpha-glucuronidase family glycosyl hydrolase
COORDINATES: protein motif:HMM:NF007940.0
COORDINATES: protein motif:HMM:NF013126.2
glycoside hydrolase family 3 N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR02630.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:TIGR01312.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001952.0
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF012436.2
COORDINATES: protein motif:HMM:TIGR00332.1
COORDINATES: protein motif:HMM:TIGR02757.1
GO:0005575 - cellular_component [Evidence IEA]
GO:0003674 - molecular_function [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016365.2
COORDINATES: protein motif:HMM:NF019265.2
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:TIGR00029.2
COORDINATES: protein motif:HMM:NF012376.2
GO:0009166 - nucleotide catabolic process [Evidence IEA]
5'-nucleotidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013722.2
COORDINATES: protein motif:HMM:TIGR00233.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014654.2
COORDINATES: protein motif:HMM:NF016005.2
GO:0005515 - protein binding [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00093.1
COORDINATES: protein motif:HMM:NF021492.2
COORDINATES: protein motif:HMM:NF027581.2
COORDINATES: protein motif:HMM:TIGR01668.1
GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF020252.2
COORDINATES: protein motif:HMM:NF013670.2
COORDINATES: protein motif:HMM:TIGR01367.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02127.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01037.1
COORDINATES: protein motif:HMM:NF021903.2
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:TIGR00670.1
GO:0016597 - amino acid binding [Evidence IEA]; GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO:0006520 - amino acid metabolic process [Evidence IEA]
aspartate carbamoyltransferase catalytic subunit
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: similar to AA sequence:RefSeq:WP_014969038.1
GO:0009326 - formate dehydrogenase complex [Evidence IEA]
GO:0008863 - formate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0015942 - formate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01744.1
GO:0016763 - pentosyltransferase activity [Evidence IEA]
GO:0043101 - purine-containing compound salvage [Evidence IEA]; GO:0046110 - xanthine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016825.2
cyclodeaminase/cyclohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000667286.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_016289947.1
COORDINATES: protein motif:HMM:NF024628.2
COORDINATES: protein motif:HMM:NF020967.2
COORDINATES: similar to AA sequence:RefSeq:WP_013801934.1
COORDINATES: similar to AA sequence:RefSeq:WP_016290830.1
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF024825.2
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:NF025885.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:NF008453.0
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF014910.2
COORDINATES: protein motif:HMM:NF013200.2
electron transfer flavoprotein subunit alpha/FixB family protein
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: protein motif:HMM:NF007497.0
GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF033504.1
GO:0050043 - lactate racemase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02635.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
GO:0019299 - rhamnose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF028442.2
COORDINATES: protein motif:HMM:NF018767.2
COORDINATES: protein motif:HMM:NF024799.2
substrate-binding domain-containing protein
sugar ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF020650.2
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:NF013916.2
COORDINATES: similar to AA sequence:RefSeq:WP_011026705.1
COORDINATES: protein motif:HMM:NF013100.2
COORDINATES: protein motif:HMM:NF025042.2
COORDINATES: protein motif:HMM:NF013117.2
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: protein motif:HMM:NF012365.2
COORDINATES: protein motif:HMM:NF013647.2
V-type ATPase 116kDa subunit family protein
COORDINATES: protein motif:HMM:NF014094.2
COORDINATES: protein motif:HMM:NF019585.2
COORDINATES: protein motif:HMM:NF014119.2
COORDINATES: protein motif:HMM:NF014716.2
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF015763.2
HoxN/HupN/NixA family nickel/cobalt transporter
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00243.1
GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate reductoisomerase
COORDINATES: protein motif:HMM:NF014244.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013134.2
COORDINATES: protein motif:HMM:NF013923.2
COORDINATES: protein motif:HMM:NF014758.2
COORDINATES: protein motif:HMM:NF015714.2
COORDINATES: protein motif:HMM:NF005744.0
pyridoxal phosphate-dependent aminotransferase
COORDINATES: protein motif:HMM:NF015901.2
COORDINATES: protein motif:HMM:TIGR01297.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF033788.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF024981.2
COORDINATES: similar to AA sequence:RefSeq:WP_016290574.1
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:NF012610.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF022018.2
COORDINATES: protein motif:HMM:NF013579.2
COORDINATES: protein motif:HMM:TIGR00348.1
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF024107.2
COORDINATES: protein motif:HMM:NF026853.2
MvaI/BcnI family restriction endonuclease
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_000301556.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-diphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF013539.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]
GO:1901135 - carbohydrate derivative metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013358.2
COORDINATES: protein motif:HMM:NF015004.2
pyrimidine dimer DNA glycosylase/endonuclease V
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00407.1
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01027.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014912.2
COORDINATES: protein motif:HMM:NF012607.2
COORDINATES: protein motif:HMM:TIGR01350.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013843.2
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF014088.2
COORDINATES: protein motif:HMM:TIGR00211.2
GO:0009345 - glycine-tRNA ligase complex [Evidence IEA]
GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00388.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF014037.2
COORDINATES: protein motif:HMM:NF013380.2
tRNA-dihydrouridine synthase family protein
COORDINATES: protein motif:HMM:NF016147.2
COORDINATES: protein motif:HMM:NF018798.2
COORDINATES: protein motif:HMM:NF012312.2
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF004943.0
COORDINATES: protein motif:HMM:NF016064.2
YeeE/YedE thiosulfate transporter family protein
COORDINATES: protein motif:HMM:NF024634.2
COORDINATES: protein motif:HMM:NF014635.2
COORDINATES: protein motif:HMM:NF021521.2
COORDINATES: protein motif:HMM:TIGR00367.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013125.2
COORDINATES: protein motif:HMM:TIGR01065.1
COORDINATES: protein motif:HMM:NF024488.2
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: protein motif:HMM:NF012904.2
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:NF025182.2
COORDINATES: protein motif:HMM:NF022623.2
COORDINATES: protein motif:HMM:NF019496.2
L-fucose/L-arabinose isomerase family protein
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002338079.1
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:TIGR00031.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF021489.2
COORDINATES: similar to AA sequence:RefSeq:WP_012726479.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014668.2
COORDINATES: similar to AA sequence:RefSeq:WP_016272824.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02258.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00560.1
GO:0008444 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
COORDINATES: protein motif:HMM:TIGR01125.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
30S ribosomal protein S12 methylthiotransferase RimO
COORDINATES: protein motif:HMM:NF025743.2
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001490.0
GO:0008252 - nucleotidase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013473.2
COORDINATES: protein motif:HMM:NF017755.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00259.1
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012673.2
COORDINATES: protein motif:HMM:NF040563.1
COORDINATES: protein motif:HMM:NF004042.0
bifunctional methionine sulfoxide reductase B/A protein
COORDINATES: protein motif:HMM:NF015013.2
COORDINATES: similar to AA sequence:RefSeq:WP_011001079.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001126.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: protein motif:HMM:NF019850.2
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00445.1
GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: protein motif:HMM:TIGR01087.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: protein motif:HMM:NF013279.2
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: protein motif:HMM:NF015022.2
UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: protein motif:HMM:NF013378.2
COORDINATES: protein motif:HMM:NF010191.0
COORDINATES: protein motif:HMM:NF012911.2
COORDINATES: protein motif:HMM:TIGR00099.1
COORDINATES: protein motif:HMM:NF005995.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01397.1
COORDINATES: protein motif:HMM:NF015693.2
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
flagellar basal body-associated FliL family protein
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:NF013760.2
COORDINATES: protein motif:HMM:NF018043.2
flagellar hook-basal body complex protein
COORDINATES: protein motif:HMM:NF025230.2
flagellar hook capping FlgD N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF014207.2
flagellar hook-length control protein FliK
COORDINATES: protein motif:HMM:TIGR00711.1
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: protein motif:HMM:NF002636.0
GO:0003999 - adenine phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012562.2
COORDINATES: protein motif:HMM:TIGR01945.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015100.2
RnfABCDGE type electron transport complex subunit D
COORDINATES: protein motif:HMM:NF016121.2
COORDINATES: protein motif:HMM:NF009070.0
COORDINATES: protein motif:HMM:TIGR01943.1
GO:0009055 - electron transfer activity [Evidence IEA]
RnfABCDGE type electron transport complex subunit A
COORDINATES: protein motif:HMM:TIGR01944.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
RnfABCDGE type electron transport complex subunit B
COORDINATES: protein motif:HMM:NF014664.2
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF014036.2
COORDINATES: protein motif:HMM:NF013633.2
COORDINATES: protein motif:HMM:TIGR02152.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF036410.2
COORDINATES: protein motif:HMM:NF014101.2
COORDINATES: protein motif:HMM:NF008900.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF004043.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00071.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00478.1
COORDINATES: protein motif:HMM:NF006630.0
GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0017038 - protein import [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_161847565.1
GO:0003747 - translation release factor activity [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024319.2
COORDINATES: protein motif:HMM:NF015000.2
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0006629 - lipid metabolic process [Evidence IEA]
glycerophosphodiester phosphodiesterase family protein
COORDINATES: protein motif:HMM:NF033559.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020473.2
COORDINATES: protein motif:HMM:NF005321.0
COORDINATES: protein motif:HMM:NF013884.2
COORDINATES: protein motif:HMM:TIGR03491.1
TM0106 family RecB-like putative nuclease
COORDINATES: protein motif:HMM:TIGR00697.1
GO:1990397 - queuosine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF013398.2
GO:0033739 - preQ1 synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013411.2
GO:0003824 - catalytic activity [Evidence IEA]
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: protein motif:HMM:NF024743.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: protein motif:HMM:NF021388.2
COORDINATES: protein motif:HMM:NF019344.2
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: protein motif:HMM:NF001413.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: protein motif:HMM:TIGR00089.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
MiaB/RimO family radical SAM methylthiotransferase
COORDINATES: protein motif:HMM:NF013247.2
COORDINATES: protein motif:HMM:TIGR00255.1
COORDINATES: protein motif:HMM:NF003315.0
COORDINATES: protein motif:HMM:TIGR03263.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00690.1
GO:0000345 - cytosolic DNA-directed RNA polymerase complex [Evidence IEA]
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: protein motif:HMM:TIGR00521.1
GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO:0015939 - pantothenate metabolic process [Evidence IEA]
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC
COORDINATES: protein motif:HMM:TIGR02187.1
COORDINATES: protein motif:HMM:TIGR01292.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: protein motif:HMM:NF015557.2
COORDINATES: protein motif:HMM:TIGR03168.1
1-phosphofructokinase family hexose kinase
COORDINATES: protein motif:HMM:NF013347.2
class I SAM-dependent RNA methyltransferase
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: similar to AA sequence:RefSeq:WP_002336979.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:NF014586.2
COORDINATES: protein motif:HMM:TIGR02196.1
COORDINATES: protein motif:HMM:NF014296.2
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0006555 - methionine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012613.2
S-layer homology domain-containing protein
COORDINATES: protein motif:HMM:NF019911.2
COORDINATES: protein motif:HMM:TIGR03723.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: similar to AA sequence:RefSeq:WP_016290038.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpX
COORDINATES: similar to AA sequence:RefSeq:WP_012204529.1
GO:0009368 - endopeptidase Clp complex [Evidence IEA]
GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
ATP-dependent Clp endopeptidase proteolytic subunit ClpP
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016448039.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
ATP-dependent protease ATPase subunit HslU
COORDINATES: similar to AA sequence:RefSeq:WP_015365078.1
GO:0004298 - threonine-type endopeptidase activity [Evidence IEA]
GO:0051603 - proteolysis involved in protein catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002378.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013621.2
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012420445.1
COORDINATES: similar to AA sequence:RefSeq:WP_005920153.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR02504.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: protein motif:HMM:TIGR00755.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:TIGR01078.1
GO:0016990 - arginine deiminase activity [Evidence IEA]
GO:0019546 - arginine deiminase pathway [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00936.1
GO:0004013 - adenosylhomocysteinase activity [Evidence IEA]
nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:TIGR00005.1
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:TIGR00331.1
GO:0009408 - response to heat [Evidence IEA]
heat-inducible transcriptional repressor HrcA
COORDINATES: protein motif:HMM:NF013212.2
COORDINATES: protein motif:HMM:NF008035.0
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: protein motif:HMM:NF010120.0
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoF
COORDINATES: protein motif:HMM:NF013426.2
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: similar to AA sequence:RefSeq:WP_016292962.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: protein motif:HMM:NF013227.2
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:TIGR03026.1
COORDINATES: protein motif:HMM:NF024700.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01241.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016291647.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: protein motif:HMM:NF013999.2
COORDINATES: protein motif:HMM:NF007113.1
nucleoside triphosphate pyrophosphohydrolase
COORDINATES: protein motif:HMM:NF013982.2
COORDINATES: protein motif:HMM:NF013543.2
COORDINATES: protein motif:HMM:NF012700.2
COORDINATES: protein motif:HMM:NF014165.2
COORDINATES: protein motif:HMM:NF006055.0
COORDINATES: protein motif:HMM:NF012512.2
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: protein motif:HMM:TIGR01178.1
GO:0000034 - adenine deaminase activity [Evidence IEA]
GO:0006168 - adenine salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF015048.2
COORDINATES: protein motif:HMM:NF014679.2
COORDINATES: protein motif:HMM:NF001843.0
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
large conductance mechanosensitive channel protein MscL
COORDINATES: protein motif:HMM:TIGR00010.1
COORDINATES: protein motif:HMM:NF024731.2
COORDINATES: protein motif:HMM:TIGR00368.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: protein motif:HMM:NF014003.2
COORDINATES: protein motif:HMM:NF012400.2
COORDINATES: similar to AA sequence:RefSeq:WP_003829846.1
COORDINATES: protein motif:HMM:TIGR00964.1
COORDINATES: protein motif:HMM:TIGR00922.1
transcription termination/antitermination protein NusG
COORDINATES: similar to AA sequence:RefSeq:WP_013028894.1
COORDINATES: similar to AA sequence:RefSeq:WP_003225765.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00557
ribosomal protein L10 leader region; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF000955.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001273587.1
COORDINATES: protein motif:HMM:NF001616.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0032549 - ribonucleoside binding [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_012727684.1
COORDINATES: protein motif:HMM:TIGR02386.1
DNA-directed RNA polymerase subunit beta'
COORDINATES: protein motif:HMM:NF018448.2
threonine/serine exporter family protein
COORDINATES: protein motif:HMM:NF024230.2
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: protein motif:HMM:NF039907.1
COORDINATES: protein motif:HMM:TIGR01212.1
GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
This family includes YhcC from E. coli K-12, an uncharacterized radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01697.1
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02644.1
GO:0016154 - pyrimidine-nucleoside phosphorylase activity [Evidence IEA]
GO:0006213 - pyrimidine nucleoside metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF009381.0
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: similar to AA sequence:RefSeq:WP_015900354.1
COORDINATES: protein motif:HMM:NF014089.2
COORDINATES: protein motif:HMM:NF009668.0
GO:0051920 - peroxiredoxin activity [Evidence IEA]; GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
GO:0098869 - cellular oxidant detoxification [Evidence IEA]
COORDINATES: protein motif:HMM:NF001923.0
COORDINATES: protein motif:HMM:NF012674.2
COORDINATES: similar to AA sequence:RefSeq:WP_016290463.1
COORDINATES: protein motif:HMM:TIGR00205.1
flagellar hook-basal body complex protein FliE
COORDINATES: protein motif:HMM:TIGR00585.2
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00186.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: protein motif:HMM:NF037015.2
COORDINATES: protein motif:HMM:NF024861.2
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF037100.2
COORDINATES: protein motif:HMM:NF027249.2
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF019540.2
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: protein motif:HMM:NF016167.2
COORDINATES: protein motif:HMM:NF037832.2
COORDINATES: protein motif:HMM:NF021560.2
COORDINATES: protein motif:HMM:NF037113.2
PBECR2 nuclease fold domain-containing protein
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:TIGR02170.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02191.1
GO:0004525 - ribonuclease III activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02168.1
GO:0030261 - chromosome condensation [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016291381.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016382.2
COORDINATES: protein motif:HMM:TIGR03959.1
COORDINATES: similar to AA sequence:RefSeq:WP_009567413.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00810.1
COORDINATES: protein motif:HMM:NF013931.2
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: protein motif:HMM:NF013855.2
COORDINATES: protein motif:HMM:NF018004.2
COORDINATES: protein motif:HMM:NF022077.2
COORDINATES: protein motif:HMM:TIGR03725.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: protein motif:HMM:NF015941.2
COORDINATES: protein motif:HMM:TIGR00464.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: similar to AA sequence:RefSeq:WP_016292883.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00374.1
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF015444.2
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: protein motif:HMM:NF014850.2
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: protein motif:HMM:NF041089.1
GO:0032450 - maltose alpha-glucosidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: protein motif:HMM:NF016472.2
ADP-dependent glucokinase/phosphofructokinase
COORDINATES: protein motif:HMM:NF015947.2
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013970.2
COORDINATES: protein motif:HMM:NF012670.2
COORDINATES: protein motif:HMM:NF014325.2
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: protein motif:HMM:TIGR00206.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: similar to AA sequence:RefSeq:WP_016290466.1
GO:0009433 - bacterial-type flagellum basal body, C ring [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF014196.2
COORDINATES: protein motif:HMM:NF027563.2
COORDINATES: protein motif:HMM:NF002600.0
GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00644.1
GO:0008297 - single-stranded DNA exodeoxyribonuclease activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: protein motif:HMM:NF015607.2
COORDINATES: protein motif:HMM:NF021073.2
COORDINATES: protein motif:HMM:TIGR01131.1
GO:0000276 - mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045264 - plasma membrane proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]; GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) [Evidence IEA]
GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism [Evidence IEA]
GO:0015986 - proton motive force-driven ATP synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF009999.0
COORDINATES: protein motif:HMM:TIGR01144.1
COORDINATES: protein motif:HMM:TIGR01145.1
GO:0000275 - mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) [Evidence IEA]; GO:0045262 - plasma membrane proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]; GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016292873.1
COORDINATES: protein motif:HMM:NF012456.2
COORDINATES: similar to AA sequence:RefSeq:WP_020045332.1
COORDINATES: protein motif:HMM:TIGR01216.1
COORDINATES: protein motif:HMM:NF002872.1
GO:0006002 - fructose 6-phosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00296.1
COORDINATES: protein motif:HMM:TIGR01968.1
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00149.1
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:NF008955.0
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00482.1
GO:0000309 - nicotinamide-nucleotide adenylyltransferase activity [Evidence IEA]; GO:0004515 - nicotinate-nucleotide adenylyltransferase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
nicotinate (nicotinamide) nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:NF016816.2
COORDINATES: protein motif:HMM:TIGR00420.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02395.1
GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01378.1
GO:0004788 - thiamine diphosphokinase activity [Evidence IEA]
GO:0006772 - thiamine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF027583.2
COORDINATES: protein motif:HMM:NF015052.2
COORDINATES: protein motif:HMM:TIGR02176.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016903 - oxidoreductase activity, acting on the aldehyde or oxo group of donors [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
pyruvate:ferredoxin (flavodoxin) oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_002515614.1
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF027565.2
COORDINATES: protein motif:HMM:TIGR01994.1
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
SUF system NifU family Fe-S cluster assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_010712667.1
GO:0031071 - cysteine desulfurase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013614.2
SufD family Fe-S cluster assembly protein
COORDINATES: protein motif:HMM:TIGR01980.1
COORDINATES: similar to AA sequence:RefSeq:WP_002503432.1
COORDINATES: protein motif:HMM:NF015513.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF014669.2
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF006871.0
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02063.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014624.2
metal-sensitive transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00225.1
COORDINATES: similar to AA sequence:RefSeq:WP_018286751.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016424889.1
COORDINATES: protein motif:HMM:NF024483.2
COORDINATES: protein motif:HMM:TIGR02273.1
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00088.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: protein motif:HMM:NF021455.2
COORDINATES: similar to AA sequence:RefSeq:WP_005590628.1
COORDINATES: protein motif:HMM:NF021981.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03596.1
COORDINATES: similar to AA sequence:RefSeq:WP_002510960.1
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF010598.0
COORDINATES: protein motif:HMM:NF013887.2
COORDINATES: protein motif:HMM:NF024245.2
COORDINATES: protein motif:HMM:TIGR00046.1
COORDINATES: similar to AA sequence:RefSeq:WP_003218092.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02276.1
COORDINATES: protein motif:HMM:NF012349.2
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006863552.1
COORDINATES: similar to AA sequence:RefSeq:WP_011897301.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:TIGR00103.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: protein motif:HMM:TIGR02397.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF018766.2
COORDINATES: protein motif:HMM:TIGR00019.1
COORDINATES: protein motif:HMM:NF016340.2
GO:0008990 - rRNA (guanine-N2-)-methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00174.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: protein motif:HMM:NF001602.0
COORDINATES: protein motif:HMM:TIGR03156.1
COORDINATES: similar to AA sequence:RefSeq:WP_017370549.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00136.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
COORDINATES: protein motif:HMM:NF011442.0
putative manganese-dependent inorganic diphosphatase
COORDINATES: protein motif:HMM:NF012340.2
COORDINATES: protein motif:HMM:NF021504.2
acyl-CoA dehydratase activase-related protein
COORDINATES: protein motif:HMM:TIGR00241.1
GO:0008047 - enzyme activator activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03936.1
TIGR03936 family radical SAM-associated protein
COORDINATES: protein motif:HMM:NF018884.2
PP2C family protein-serine/threonine phosphatase
COORDINATES: protein motif:HMM:NF012861.2
COORDINATES: protein motif:HMM:NF014587.2
COORDINATES: protein motif:HMM:NF022137.2
class I SAM-dependent rRNA methyltransferase
COORDINATES: protein motif:HMM:NF014017.2
COORDINATES: protein motif:HMM:TIGR00208.1
COORDINATES: protein motif:HMM:NF024804.2
winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: protein motif:HMM:TIGR01859.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
class II fructose-1,6-bisphosphate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_016292440.1
COORDINATES: protein motif:HMM:NF001986.0
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF014844.2
COORDINATES: similar to AA sequence:RefSeq:WP_009038605.1
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: protein motif:HMM:NF014826.2
COORDINATES: protein motif:HMM:NF018753.2
COORDINATES: protein motif:HMM:NF024970.2
COORDINATES: similar to AA sequence:RefSeq:WP_016290535.1
COORDINATES: protein motif:HMM:NF014046.2
COORDINATES: protein motif:HMM:NF020660.2
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00757.1
GO:0004540 - ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF009438.0
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: protein motif:HMM:NF016250.2
COORDINATES: similar to AA sequence:RefSeq:WP_004081049.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: protein motif:HMM:NF013292.2
COORDINATES: protein motif:HMM:TIGR02473.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00472.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00468.1
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:NF014713.2
cytochrome c biogenesis CcdA family protein
COORDINATES: protein motif:HMM:NF024498.2
thioredoxin fold domain-containing protein
COORDINATES: protein motif:HMM:NF039826.1
COORDINATES: protein motif:HMM:NF012451.2
COORDINATES: protein motif:HMM:NF017633.2
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: protein motif:HMM:TIGR00546.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01051.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00492.1
GO:0008784 - alanine racemase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016290766.1
COORDINATES: protein motif:HMM:NF014685.2
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: protein motif:HMM:NF014351.2
GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
COORDINATES: protein motif:HMM:NF006225.0
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:TIGR00380.1
GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IEA]
adenosylcobinamide-phosphate synthase CbiB
COORDINATES: protein motif:HMM:NF001989.1
COORDINATES: protein motif:HMM:NF004637.0
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF025736.2
COORDINATES: protein motif:HMM:NF012485.2
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF039337.1
COORDINATES: protein motif:HMM:NF013862.2
patatin-like phospholipase family protein
COORDINATES: protein motif:HMM:NF004556.0
COORDINATES: protein motif:HMM:NF014707.2
COORDINATES: protein motif:HMM:NF024945.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR00137.1
methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO
COORDINATES: protein motif:HMM:NF005932.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF016985.2
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF016223.2
flagellar biosynthesis anti-sigma factor FlgM
COORDINATES: protein motif:HMM:NF009057.0
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]; GO:0006568 - tryptophan metabolic process [Evidence IEA]
TrpB-like pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF003820.0
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01536.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: protein motif:HMM:NF014516.2
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: similar to AA sequence:RefSeq:WP_016488765.1
COORDINATES: protein motif:HMM:NF008821.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03710.1
2-oxoacid:acceptor oxidoreductase subunit alpha
COORDINATES: protein motif:HMM:TIGR04406.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:TIGR00006.1
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:NF018899.2
COORDINATES: protein motif:HMM:TIGR00456.1
GO:0004814 - arginine-tRNA ligase activity [Evidence IEA]
GO:0006420 - arginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001503.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01455.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00499.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001263.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03599.1
COORDINATES: protein motif:HMM:NF015721.2
Asp23/Gls24 family envelope stress response protein
COORDINATES: protein motif:HMM:NF003933.0
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01280.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00237.1
COORDINATES: protein motif:HMM:NF014881.2
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase
COORDINATES: protein motif:HMM:NF010030.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001810.0
COORDINATES: similar to AA sequence:RefSeq:WP_018036478.1
GO:0050242 - pyruvate, phosphate dikinase activity [Evidence IEA]
GO:0015976 - carbon utilization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009635878.1
COORDINATES: protein motif:HMM:TIGR00001.1
COORDINATES: protein motif:HMM:TIGR00168.2
COORDINATES: protein motif:HMM:NF015651.2
COORDINATES: protein motif:HMM:NF012271.2
leucine-rich repeat domain-containing protein
COORDINATES: protein motif:HMM:NF003793.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012497.2
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:NF006421.0
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO:0046417 - chorismate metabolic process [Evidence IEA]
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
COORDINATES: protein motif:HMM:TIGR00566.1
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: protein motif:HMM:TIGR00564.1
GO:0004049 - anthranilate synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00262.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018036536.1
COORDINATES: similar to AA sequence:RefSeq:WP_010966436.1
COORDINATES: protein motif:HMM:NF012444.2
GO:0004425 - indole-3-glycerol-phosphate synthase activity [Evidence IEA]
GO:0006568 - tryptophan metabolic process [Evidence IEA]
indole-3-glycerol phosphate synthase TrpC
COORDINATES: protein motif:HMM:TIGR01245.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: protein motif:HMM:NF040743.1
Presence of a B(12) (cobalamin)-binding domain implies dependence on cobalamin itself, in one of its several forms, or in some unusual lineages, dependence on a cobalamin-like analog; Derived by automated computational analysis using gene prediction method: Protein Homology.
D-ornithine 4,5-aminomutase subunit OraE
COORDINATES: protein motif:HMM:NF027866.2
COORDINATES: protein motif:HMM:NF040741.1
2-amino-4-oxopentanoate thiolase subunit OrtB
COORDINATES: protein motif:HMM:NF040739.1
2-amino-4-oxopentanoate thiolase subunit OrtA
COORDINATES: protein motif:HMM:NF040740.1
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:TIGR00065.1
COORDINATES: protein motif:HMM:NF025806.2
cell division FtsA domain-containing protein
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004384.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015684.2
COORDINATES: protein motif:HMM:NF014010.2
COORDINATES: protein motif:HMM:TIGR01420.1
type IV pilus twitching motility protein PilT
COORDINATES: similar to AA sequence:RefSeq:WP_004810563.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:TIGR00974.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02138.1
phosphate ABC transporter permease subunit PstC
COORDINATES: protein motif:HMM:TIGR02136.1
PstS family phosphate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF005308.0
COORDINATES: protein motif:HMM:NF012655.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF024732.2
acetyl-CoA hydrolase/transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010966837.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: similar to AA sequence:RefSeq:WP_016293398.1
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:NF003658.0
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0016661 - oxidoreductase activity, acting on other nitrogenous compounds as donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00339.1
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012888.2
COORDINATES: protein motif:HMM:NF013730.2
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012434.2
COORDINATES: protein motif:HMM:TIGR01026.1
COORDINATES: protein motif:HMM:TIGR00647.1
GO:0043937 - regulation of sporulation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01826.1
uridine diphosphate-N-acetylglucosamine-binding protein YvcK
COORDINATES: protein motif:HMM:NF015620.2
GO:0051301 - cell division [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00209.1
GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
galactose-1-phosphate uridylyltransferase
COORDINATES: protein motif:HMM:TIGR02095.1
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:TIGR01254.1
thiamine ABC transporter substrate-binding protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: similar to AA sequence:RefSeq:WP_016291667.1
COORDINATES: protein motif:HMM:NF028476.2
COORDINATES: protein motif:HMM:NF021596.2
COORDINATES: protein motif:HMM:NF005154.0
GO:0004072 - aspartate kinase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: protein motif:HMM:NF011456.0
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012509.2
GO:0004795 - threonine synthase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
basic amino acid ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007117184.1
amino acid ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF015720.2
COORDINATES: protein motif:HMM:NF017026.2
COORDINATES: protein motif:HMM:NF013528.2
bifunctional oligoribonuclease/PAP phosphatase NrnA
COORDINATES: similar to AA sequence:RefSeq:WP_003564285.1
COORDINATES: protein motif:HMM:NF013345.2
alanine/ornithine racemase family PLP-dependent enzyme
COORDINATES: protein motif:HMM:TIGR02135.1
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: similar to AA sequence:RefSeq:WP_002324241.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00691.1
bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
COORDINATES: protein motif:HMM:NF015951.2
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: protein motif:HMM:TIGR00486.1
GO:0051540 - metal cluster binding [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
COORDINATES: protein motif:HMM:NF019625.2
class II D-tagatose-bisphosphate aldolase, non-catalytic subunit
COORDINATES: protein motif:HMM:NF039707.1
COORDINATES: protein motif:HMM:NF015500.2
COORDINATES: protein motif:HMM:NF018190.2
COORDINATES: protein motif:HMM:NF009498.0
COORDINATES: protein motif:HMM:NF013986.2
BadF/BadG/BcrA/BcrD ATPase family protein
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF014171.2
TrkA C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015894.2
COORDINATES: protein motif:HMM:TIGR00344.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012584.2
COORDINATES: protein motif:HMM:NF013225.2
COORDINATES: protein motif:HMM:TIGR03081.1
COORDINATES: protein motif:HMM:NF009848.0
COORDINATES: protein motif:HMM:NF013350.2
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase glutaminase subunit PdxT
COORDINATES: similar to AA sequence:RefSeq:WP_011303857.1
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: protein motif:HMM:NF013053.2
isochorismatase family cysteine hydrolase
COORDINATES: protein motif:HMM:NF021374.2
COORDINATES: protein motif:HMM:NF004051.0
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: protein motif:HMM:NF013368.2
COORDINATES: protein motif:HMM:TIGR00731.1
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01251.1
COORDINATES: protein motif:HMM:TIGR01173.1
GO:0019134 - glucosamine-1-phosphate N-acetyltransferase activity [Evidence IEA]; GO:0003977 - UDP-N-acetylglucosamine diphosphorylase activity [Evidence IEA]
bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU
COORDINATES: protein motif:HMM:TIGR00084.1
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: protein motif:HMM:TIGR01499.1
folylpolyglutamate synthase/dihydrofolate synthase family protein
COORDINATES: protein motif:HMM:NF004349.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF007825.0
GO:0016829 - lyase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015543863.1
COORDINATES: protein motif:HMM:TIGR00725.1
COORDINATES: protein motif:HMM:NF012784.2
GO:0003676 - nucleic acid binding [Evidence IEA]
S1 RNA-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00154.1
GO:0050515 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity [Evidence IEA]
GO:0016114 - terpenoid biosynthetic process [Evidence IEA]
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
COORDINATES: protein motif:HMM:NF003346.0
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: protein motif:HMM:NF001696.0
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: similar to AA sequence:RefSeq:WP_005123344.1
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
COORDINATES: protein motif:HMM:NF001567.0
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: protein motif:HMM:NF005394.0
GO:0008890 - glycine C-acetyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003808.0
GO:0008743 - L-threonine 3-dehydrogenase activity [Evidence IEA]
GO:0006567 - threonine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019487.2
COORDINATES: protein motif:HMM:NF022597.2
COORDINATES: protein motif:HMM:NF016430.2
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF024763.2
COORDINATES: protein motif:HMM:NF014803.2
COORDINATES: similar to AA sequence:RefSeq:WP_016290849.1
GO:0008929 - methylglyoxal synthase activity [Evidence IEA]
GO:0019242 - methylglyoxal biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013871.2
COORDINATES: protein motif:HMM:NF019575.2
COORDINATES: protein motif:HMM:NF024110.2
COORDINATES: protein motif:HMM:NF010200.1
GO:0003933 - GTP cyclohydrolase activity [Evidence IEA]
GO:0035998 - 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04337.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
AmmeMemoRadiSam system radical SAM enzyme
COORDINATES: protein motif:HMM:NF014477.2
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF019099.2
COORDINATES: protein motif:HMM:NF018685.2
COORDINATES: protein motif:HMM:NF014591.2
COORDINATES: protein motif:HMM:NF015956.2
COORDINATES: protein motif:HMM:TIGR00437.1
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014375.2
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024678.2
COORDINATES: protein motif:HMM:NF012311.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: protein motif:HMM:NF019507.2
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: protein motif:HMM:NF016216.2
glycerol-3-phosphate responsive antiterminator
COORDINATES: protein motif:HMM:TIGR04336.1
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF025679.2
COORDINATES: protein motif:HMM:TIGR00758.1
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF020610.2
OAM dimerization domain-containing protein
COORDINATES: protein motif:HMM:NF014090.2
COORDINATES: protein motif:HMM:NF013226.2
COORDINATES: similar to AA sequence:RefSeq:WP_002898704.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
COORDINATES: protein motif:HMM:TIGR01686.1
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF027681.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: protein motif:HMM:NF012695.2
COORDINATES: protein motif:HMM:NF016908.2
COORDINATES: protein motif:HMM:NF025684.2
COORDINATES: protein motif:HMM:TIGR03820.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0050066 - lysine 2,3-aminomutase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0046440 - L-lysine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014588.2
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: protein motif:HMM:NF014420.2
energy-coupling factor transporter transmembrane component T
COORDINATES: protein motif:HMM:NF015962.2
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF039904.1
COORDINATES: protein motif:HMM:NF014525.2
MotA/TolQ/ExbB proton channel family protein
COORDINATES: protein motif:HMM:TIGR00221.1
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: protein motif:HMM:TIGR00309.1
GO:0016471 - vacuolar proton-transporting V-type ATPase complex [Evidence IEA]
GO:0008553 - P-type proton-exporting transporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010744508.1
COORDINATES: protein motif:HMM:NF003220.0
COORDINATES: protein motif:HMM:NF014093.2
GO:0033178 - proton-transporting two-sector ATPase complex, catalytic domain [Evidence IEA]
GO:0046961 - proton-transporting ATPase activity, rotational mechanism [Evidence IEA]
V-type ATP synthase subunit E family protein
COORDINATES: protein motif:HMM:NF014092.2
COORDINATES: protein motif:HMM:NF003670.0
GO:0008878 - glucose-1-phosphate adenylyltransferase activity [Evidence IEA]
GO:0005978 - glycogen biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02092.1
glucose-1-phosphate adenylyltransferase subunit GlgD
COORDINATES: similar to AA sequence:RefSeq:WP_016291634.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: protein motif:HMM:NF039482.1
COORDINATES: protein motif:HMM:NF014389.2
COORDINATES: similar to AA sequence:RefSeq:WP_001837006.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:NF003037.0
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00290.1
COORDINATES: protein motif:HMM:NF006126.0
GO:0008998 - ribonucleoside-triphosphate reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02495.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0051353 - positive regulation of oxidoreductase activity [Evidence IEA]
anaerobic ribonucleoside-triphosphate reductase activating protein
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF014312.2
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: protein motif:HMM:TIGR00836.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: protein motif:HMM:NF021778.2
COORDINATES: protein motif:HMM:NF015949.2
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: protein motif:HMM:NF017280.2
COORDINATES: similar to AA sequence:RefSeq:WP_003131818.1
COORDINATES: protein motif:HMM:NF013022.2
GO:0004526 - ribonuclease P activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002452125.1
membrane protein insertion efficiency factor YidD
COORDINATES: protein motif:HMM:TIGR03592.1
GO:0051205 - protein insertion into membrane [Evidence IEA]
RNA-binding cell elongation regulator Jag/EloR
COORDINATES: similar to AA sequence:RefSeq:WP_005874204.1
GO:0030412 - formimidoyltetrahydrofolate cyclodeaminase activity [Evidence IEA]; GO:0030409 - glutamate formimidoyltransferase activity [Evidence IEA]
GO:0019556 - histidine catabolic process to glutamate and formamide [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01224.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014629.2
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: similar to AA sequence:RefSeq:WP_010734488.1
GO:0004126 - cytidine deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009972 - cytidine deamination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00488.1
bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK
COORDINATES: protein motif:HMM:NF013356.2
GO:0017057 - 6-phosphogluconolactonase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00871.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00872.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:NF012413.2
COORDINATES: protein motif:HMM:NF041091.1
GO:0004069 - L-aspartate:2-oxoglutarate aminotransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013146.2
COORDINATES: protein motif:HMM:NF012697.2
COORDINATES: protein motif:HMM:NF006412.0
COORDINATES: similar to AA sequence:RefSeq:WP_002297874.1
GO:0004068 - aspartate 1-decarboxylase activity [Evidence IEA]
GO:0006523 - alanine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF005591.0
GO:0016805 - dipeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020977.2
COORDINATES: protein motif:HMM:NF012335.2
COORDINATES: protein motif:HMM:NF001753.0
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF012678.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024969.2
COORDINATES: protein motif:HMM:NF013256.2
COORDINATES: protein motif:HMM:NF041088.1
GO:0008784 - alanine racemase activity [Evidence IEA]; GO:0008881 - glutamate racemase activity [Evidence IEA]
GO:0008360 - regulation of cell shape [Evidence IEA]
bifunctional L-alanine/L-glutamate racemase
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: protein motif:HMM:NF012931.2
COORDINATES: protein motif:HMM:TIGR00587.1
COORDINATES: protein motif:HMM:NF013239.2
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00023.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: protein motif:HMM:TIGR03594.1
COORDINATES: protein motif:HMM:TIGR00216.1
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: protein motif:HMM:NF014300.2
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00377.1
COORDINATES: protein motif:HMM:NF001750.0
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF021357.2
COORDINATES: protein motif:HMM:TIGR01511.1
COORDINATES: protein motif:HMM:NF012621.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015581.2
COORDINATES: protein motif:HMM:NF021378.2
COORDINATES: protein motif:HMM:NF025016.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
cytochrome b N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR01934.1
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
ubiquinone/menaquinone biosynthesis methyltransferase
COORDINATES: protein motif:HMM:TIGR00680.1
GO:0031004 - potassium ion-transporting ATPase complex [Evidence IEA]
GO:0008556 - P-type potassium transmembrane transporter activity [Evidence IEA]
potassium-transporting ATPase subunit KdpA
COORDINATES: protein motif:HMM:TIGR01497.1
potassium-transporting ATPase subunit KdpB
COORDINATES: protein motif:HMM:NF001454.0
potassium-transporting ATPase subunit KdpC
COORDINATES: protein motif:HMM:NF014728.2
COORDINATES: protein motif:HMM:NF025865.2
COORDINATES: protein motif:HMM:NF013361.2
phenylpyruvate tautomerase MIF-related protein
COORDINATES: protein motif:HMM:NF001159.1
GO:0042586 - peptide deformylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00460.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017743.2
COORDINATES: protein motif:HMM:NF004326.0
GO:0046523 - S-methyl-5-thioribose-1-phosphate isomerase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]
S-methyl-5-thioribose-1-phosphate isomerase
COORDINATES: protein motif:HMM:NF015822.2
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: protein motif:HMM:NF041131.1
regulatory iron-sulfur-containing complex subunit RicT
COORDINATES: protein motif:HMM:TIGR00430.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00409.1
GO:0002161 - aminoacyl-tRNA editing activity [Evidence IEA]; GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]; GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: protein motif:HMM:NF014657.2
COORDINATES: protein motif:HMM:TIGR01031.1
COORDINATES: protein motif:HMM:NF014554.2
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:TIGR00090.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00396.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF003993.0
redox-sensing transcriptional repressor Rex
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: protein motif:HMM:TIGR00418.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008803480.1
COORDINATES: protein motif:HMM:NF017652.2
3-keto-5-aminohexanoate cleavage protein
COORDINATES: protein motif:HMM:TIGR00739.1
COORDINATES: protein motif:HMM:TIGR01129.1
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00966.2
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012912.2
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00928.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF000848.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00132.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: protein motif:HMM:NF004012.0
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: protein motif:HMM:TIGR01496.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01498.1
GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA]
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
COORDINATES: protein motif:HMM:NF010588.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003952 - NAD+ synthase (glutamine-hydrolyzing) activity [Evidence IEA]
fibronectin type III domain-containing protein
COORDINATES: protein motif:HMM:NF016432.2
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010936990.1
COORDINATES: protein motif:HMM:NF019291.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: protein motif:HMM:NF023857.2
COORDINATES: protein motif:HMM:NF016268.2
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014130.2
GO:0019843 - rRNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00083.1
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
GO:0006747 - FAD biosynthetic process [Evidence IEA]; GO:0009398 - FMN biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00797.1
COORDINATES: similar to AA sequence:RefSeq:WP_016290650.1
COORDINATES: protein motif:HMM:NF008805.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:NF014344.2
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: protein motif:HMM:NF006821.0
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR00636.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013058.2
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: protein motif:HMM:NF014711.2
COORDINATES: protein motif:HMM:TIGR00631.1
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF000595.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02492.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
COORDINATES: protein motif:HMM:NF012874.2
COORDINATES: protein motif:HMM:NF009793.2
GO:0044780 - bacterial-type flagellum assembly [Evidence IEA]; GO:0006417 - regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00202.1
GO:0006109 - regulation of carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: protein motif:HMM:NF013219.2
COORDINATES: protein motif:HMM:TIGR00194.1
GO:0009381 - excinuclease ABC activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003296.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00653.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002852.0
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]
GO:0006562 - proline catabolic process [Evidence IEA]
L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF024900.2
COORDINATES: protein motif:HMM:TIGR00196.1
GO:0052855 - ADP-dependent NAD(P)H-hydrate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04350.1
COORDINATES: protein motif:HMM:NF013980.2
SprT family zinc-dependent metalloprotease
COORDINATES: protein motif:HMM:TIGR03918.1
[FeFe] hydrogenase H-cluster maturation GTPase HydF
COORDINATES: protein motif:HMM:NF008909.0
COORDINATES: protein motif:HMM:TIGR00719.1
GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006565 - L-serine catabolic process [Evidence IEA]
L-serine ammonia-lyase, iron-sulfur-dependent subunit beta
COORDINATES: protein motif:HMM:TIGR00718.1
L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha
COORDINATES: protein motif:HMM:TIGR00652.1
GO:0008837 - diaminopimelate epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00674.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: protein motif:HMM:NF017024.2
dihydrodipicolinate reductase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012009788.1
GO:0047200 - tetrahydrodipicolinate N-acetyltransferase activity [Evidence IEA]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase
COORDINATES: protein motif:HMM:NF012428.2
aspartate aminotransferase family protein
cobalamin B12-binding domain-containing protein
COORDINATES: protein motif:HMM:NF019494.2
polyhydroxyalkanoate synthesis regulator DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF028441.2
outer membrane lipoprotein-sorting protein
COORDINATES: protein motif:HMM:NF015155.2
glycoside hydrolase family 38 C-terminal domain-containing protein
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF009676.0
GO:0030163 - protein catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF039236.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: protein motif:HMM:NF025608.2
GO:0009976 - tocopherol cyclase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040142.1
glycosyl-4,4'-diaponeurosporenoate acyltransferase
COORDINATES: protein motif:HMM:NF024896.2
COORDINATES: protein motif:HMM:NF014049.2
COORDINATES: protein motif:HMM:NF016155.2
COORDINATES: protein motif:HMM:NF012705.2
phytoene/squalene synthase family protein
COORDINATES: protein motif:HMM:TIGR02734.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01573.1
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03641.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
type I-B CRISPR-associated endonuclease Cas1b
COORDINATES: protein motif:HMM:TIGR00372.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01587.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02592.1
type I-B CRISPR-associated protein Cas5b
COORDINATES: protein motif:HMM:TIGR02590.1
type I-B CRISPR-associated protein Cas7/Csh2
COORDINATES: protein motif:HMM:TIGR02556.1
TIGR02556 family CRISPR-associated protein
COORDINATES: protein motif:HMM:NF025840.2
COORDINATES: protein motif:HMM:NF013798.2
COORDINATES: protein motif:HMM:TIGR01877.1
COORDINATES: protein motif:HMM:TIGR01898.1
type III-B CRISPR module RAMP protein Cmr6
COORDINATES: protein motif:HMM:NF021237.2
type III-B CRISPR module-associated protein Cmr5
COORDINATES: protein motif:HMM:TIGR02580.1
type III-B CRISPR module RAMP protein Cmr4
COORDINATES: protein motif:HMM:NF021236.2
type III-B CRISPR module-associated Cmr3 family protein
COORDINATES: protein motif:HMM:TIGR01888.1
type III-B CRISPR module-associated protein Cmr3
COORDINATES: protein motif:HMM:TIGR02577.1
type III-B CRISPR-associated protein Cas10/Cmr2
COORDINATES: protein motif:HMM:TIGR01894.1
type III-B CRISPR module RAMP protein Cmr1
COORDINATES: protein motif:HMM:TIGR02619.1
COORDINATES: protein motif:HMM:TIGR01881.1
COORDINATES: protein motif:HMM:NF021189.2
COORDINATES: protein motif:HMM:NF012771.2
COORDINATES: protein motif:HMM:NF014615.2
homocysteine S-methyltransferase family protein
energy-coupling factor transporter ATPase
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:TIGR01188.1
COORDINATES: protein motif:HMM:NF013188.2
COORDINATES: protein motif:HMM:NF014012.2
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015993.2
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: protein motif:HMM:NF009314.0
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: protein motif:HMM:NF024641.2
COORDINATES: protein motif:HMM:NF015970.2
COORDINATES: protein motif:HMM:NF012636.2
COORDINATES: protein motif:HMM:NF012581.2
proton-conducting transporter membrane subunit
COORDINATES: protein motif:HMM:NF012373.2
COORDINATES: protein motif:HMM:TIGR01957.1
COORDINATES: protein motif:HMM:NF012549.2
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004739.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002415046.1
sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016291044.1
GO:0004355 - glutamate synthase (NADPH) activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012267.2
sensor domain-containing diguanylate cyclase
COORDINATES: protein motif:HMM:NF012382.2
PLP-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF002834.0
GO:0047761 - butyrate kinase activity [Evidence IEA]
GO:0006113 - fermentation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013665.2
GO:0050182 - phosphate butyryltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009598251.1
COORDINATES: protein motif:HMM:NF005507.0
3-methyl-2-oxobutanoate dehydrogenase subunit VorB
COORDINATES: protein motif:HMM:TIGR02175.1
COORDINATES: protein motif:HMM:TIGR00507.1
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014234.2
COORDINATES: similar to AA sequence:RefSeq:WP_016290277.1
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01796.1
GO:0004106 - chorismate mutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015418.2
COORDINATES: protein motif:HMM:NF013183.2
MogA/MoaB family molybdenum cofactor biosynthesis protein
COORDINATES: protein motif:HMM:TIGR00131.1
GO:0004335 - galactokinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00166.1
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_016292916.1
COORDINATES: protein motif:HMM:TIGR00158.1
COORDINATES: protein motif:HMM:NF014062.2
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: protein motif:HMM:TIGR00200.1
CinA family nicotinamide mononucleotide deamidase-related protein
COORDINATES: protein motif:HMM:NF012514.2
COORDINATES: protein motif:HMM:TIGR01695.1
GO:0034204 - lipid translocation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
murein biosynthesis integral membrane protein MurJ
COORDINATES: protein motif:HMM:TIGR00571.1
COORDINATES: protein motif:HMM:NF017933.2
COORDINATES: protein motif:HMM:NF015239.2
COORDINATES: protein motif:HMM:NF005589.0
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019589.2
COORDINATES: protein motif:HMM:NF006829.0
COORDINATES: protein motif:HMM:NF015047.2
COORDINATES: protein motif:HMM:NF012901.2
GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005902726.1
GO:0000036 - acyl carrier activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024587.2
COORDINATES: protein motif:HMM:NF005123.0
COORDINATES: similar to AA sequence:RefSeq:WP_004114069.1
COORDINATES: protein motif:HMM:NF018647.2
COORDINATES: protein motif:HMM:NF014649.2
COORDINATES: protein motif:HMM:NF009222.0
GO:0016835 - carbon-oxygen lyase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009254 - peptidoglycan turnover [Evidence IEA]
N-acetylmuramic acid 6-phosphate etherase
COORDINATES: protein motif:HMM:NF018743.2
COORDINATES: protein motif:HMM:NF013961.2
transglutaminase-like domain-containing protein
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF007148.0
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: protein motif:HMM:NF013073.2
COORDINATES: protein motif:HMM:NF013025.2
COORDINATES: protein motif:HMM:NF016233.2
ribosomal-processing cysteine protease Prp
COORDINATES: similar to AA sequence:RefSeq:WP_009382703.1
COORDINATES: protein motif:HMM:NF024231.2
COORDINATES: similar to AA sequence:RefSeq:WP_020063210.1
COORDINATES: similar to AA sequence:RefSeq:WP_016293468.1
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: protein motif:HMM:NF015912.2
COORDINATES: similar to AA sequence:RefSeq:WP_016176834.1
COORDINATES: protein motif:HMM:TIGR01208.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase
COORDINATES: protein motif:HMM:NF003160.0
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF017964.2
COORDINATES: protein motif:HMM:NF012488.2
alanine--glyoxylate aminotransferase family protein
COORDINATES: protein motif:HMM:NF009555.0
YgeY family selenium metabolism-linked hydrolase
COORDINATES: protein motif:HMM:NF012412.2
functions to transport ribose at high affinity; forms a complex with RbsA2C2B; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF006873.0
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:NF025255.2
COORDINATES: protein motif:HMM:TIGR00744.1
signal recognition particle sRNA large type
COORDINATES: nucleotide motif:Rfam:14.4:RF01854
COORDINATES: protein motif:HMM:TIGR00077.1
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF013867.2
protein-glutamate O-methyltransferase CheR
COORDINATES: protein motif:HMM:NF001030.0
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016293058.1
COORDINATES: protein motif:HMM:TIGR00299.1
nickel pincer cofactor biosynthesis protein LarC
COORDINATES: protein motif:HMM:NF033503.1
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
nickel pincer cofactor biosynthesis protein LarB
COORDINATES: protein motif:HMM:TIGR00268.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]
ATP-dependent sacrificial sulfur transferase LarE
COORDINATES: protein motif:HMM:NF014173.2
COORDINATES: similar to AA sequence:RefSeq:WP_016292462.1
COORDINATES: protein motif:HMM:TIGR02037.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0006508 - proteolysis [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02429.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02428.1
COORDINATES: protein motif:HMM:NF015039.2
COORDINATES: protein motif:HMM:TIGR00539.1
GO:0051989 - coproporphyrinogen dehydrogenase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018076.2
50S ribosomal protein L11 methyltransferase
COORDINATES: protein motif:HMM:NF016206.2
COORDINATES: protein motif:HMM:NF013362.2
transcription antitermination factor NusB
COORDINATES: protein motif:HMM:TIGR00048.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: protein motif:HMM:TIGR00157.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
ribosome small subunit-dependent GTPase A
COORDINATES: protein motif:HMM:TIGR01163.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013222.2
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009245056.1
GO:0003864 - 3-methyl-2-oxobutanoate hydroxymethyltransferase activity [Evidence IEA]
GO:0015940 - pantothenate biosynthetic process [Evidence IEA]
3-methyl-2-oxobutanoate hydroxymethyltransferase
COORDINATES: protein motif:HMM:NF022188.2
xanthine dehydrogenase family protein subunit M
COORDINATES: protein motif:HMM:TIGR00260.1
COORDINATES: protein motif:HMM:TIGR00750.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:1903826 - L-arginine transmembrane transport [Evidence IEA]; GO:0015819 - lysine transport [Evidence IEA]; GO:0015822 - ornithine transport [Evidence IEA]
methylmalonyl Co-A mutase-associated GTPase MeaB
COORDINATES: protein motif:HMM:TIGR00640.1
COORDINATES: protein motif:HMM:TIGR00641.1
COORDINATES: protein motif:HMM:TIGR00594.1
COORDINATES: protein motif:HMM:NF000908.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003814.0
COORDINATES: protein motif:HMM:TIGR00370.1
COORDINATES: protein motif:HMM:TIGR00724.1
biotin-dependent carboxyltransferase family protein
COORDINATES: protein motif:HMM:NF016142.2
COORDINATES: protein motif:HMM:NF018852.2
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: protein motif:HMM:NF015602.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF024848.2
COORDINATES: protein motif:HMM:TIGR01319.1
GlmL-related ornithine degradation protein
COORDINATES: protein motif:HMM:NF016160.2
SoxR reducing system RseC family protein
COORDINATES: protein motif:HMM:NF024874.2
COORDINATES: protein motif:HMM:TIGR01203.1
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF008168.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015559.2
GO:0052913 - 16S rRNA (guanine(966)-N(2))-methyltransferase activity [Evidence IEA]
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD
COORDINATES: similar to AA sequence:RefSeq:WP_003151132.1
COORDINATES: protein motif:HMM:NF005054.0
COORDINATES: protein motif:HMM:NF014750.2
aldehyde ferredoxin oxidoreductase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF009007.0
GO:0008804 - carbamate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006045.0
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: protein motif:HMM:TIGR01048.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00042.1
GO:0016462 - pyrophosphatase activity [Evidence IEA]
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
COORDINATES: protein motif:HMM:NF025038.2
COORDINATES: protein motif:HMM:NF023428.2
replication-associated recombination protein A
COORDINATES: protein motif:HMM:NF013915.2
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: protein motif:HMM:NF004397.1
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF012791.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: protein motif:HMM:TIGR01070.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0030983 - mismatched DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF004978.0
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013591.2
COORDINATES: protein motif:HMM:NF010675.0
diphosphate--fructose-6-phosphate 1-phosphotransferase
bifunctional UDP-sugar hydrolase/5'-nucleotidase
COORDINATES: similar to AA sequence:RefSeq:WP_006236109.1
COORDINATES: protein motif:HMM:NF041118.1
GO:0103031 - L-Ala-D/L-Glu epimerase activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00595.1
GO:0005658 - alpha DNA polymerase:primase complex [Evidence IEA]
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
COORDINATES: protein motif:HMM:NF013408.2
COORDINATES: protein motif:HMM:TIGR00113.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA
COORDINATES: protein motif:HMM:TIGR00608.1
COORDINATES: protein motif:HMM:NF006761.0
COORDINATES: protein motif:HMM:NF015056.2
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003679612.1
COORDINATES: protein motif:HMM:NF014620.2
NifB/NifX family molybdenum-iron cluster-binding protein
COORDINATES: protein motif:HMM:NF021285.2
COORDINATES: similar to AA sequence:RefSeq:WP_009000856.1
COORDINATES: protein motif:HMM:NF003661.0
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: similar to AA sequence:RefSeq:WP_002379278.1
GO:0009330 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex [Evidence IEA]
GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
DNA topoisomerase (ATP-hydrolyzing) subunit B
COORDINATES: protein motif:HMM:NF000711.0
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:NF001688.0
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013465.2
metal ABC transporter substrate-binding protein
metal ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013143.2
COORDINATES: protein motif:HMM:NF036294.2
COORDINATES: protein motif:HMM:NF024585.2
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: protein motif:HMM:NF020400.2
COORDINATES: protein motif:HMM:TIGR03356.1
GO:0008422 - beta-glucosidase activity [Evidence IEA]
GO:0030245 - cellulose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015615.2
COORDINATES: protein motif:HMM:NF001540.0
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: similar to AA sequence:RefSeq:WP_004847070.1
GO:0004592 - pantoate-beta-alanine ligase activity [Evidence IEA]
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016291130.1
COORDINATES: protein motif:HMM:TIGR00416.1
COORDINATES: protein motif:HMM:NF010009.0
DNA integrity scanning diadenylate cyclase DisA
COORDINATES: protein motif:HMM:NF025022.2
COORDINATES: protein motif:HMM:NF013308.2
COORDINATES: protein motif:HMM:TIGR03956.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
[FeFe] hydrogenase H-cluster radical SAM maturase HydE
COORDINATES: protein motif:HMM:TIGR03955.1
[FeFe] hydrogenase H-cluster radical SAM maturase HydG
COORDINATES: protein motif:HMM:NF040763.1
NADH-dependent [FeFe] hydrogenase, group A6
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: protein motif:HMM:NF013786.2
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013799.2
maltose ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF014627.2
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: protein motif:HMM:NF013715.2
COORDINATES: protein motif:HMM:NF015910.2
sodium ion-translocating decarboxylase subunit beta
COORDINATES: protein motif:HMM:TIGR00487.1
COORDINATES: protein motif:HMM:NF013417.2
ribosomal L7Ae/L30e/S12e/Gadd45 family protein
COORDINATES: protein motif:HMM:TIGR01953.1
COORDINATES: protein motif:HMM:NF014617.2
heterodisulfide reductase subunit A-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_011967356.1
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:TIGR00040.1