Borrelia coriaceae strain Co53 plasmid lp38, complete sequence.
Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia.
Submitted (15-APR-2021) Pediatrics-Tropical Medicine, Baylor College of Medicine, 1102 Bates Ave, Houston, TX 77030, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP075097.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 141.0x\nSequencing Technology :: Oxford Nanopore MinION; Illumina NextSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/09/2023 04:11:48\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,761\nCDSs (total) :: 1,723\nGenes (coding) :: 1,660\nCDSs (with protein) :: 1,660\nGenes (RNA) :: 38\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 32\nncRNAs :: 3\nPseudo Genes (total) :: 63\nCDSs (without protein) :: 63\nPseudo Genes (ambiguous residues) :: 0 of 63\nPseudo Genes (frameshifted) :: 31 of 63\nPseudo Genes (incomplete) :: 29 of 63\nPseudo Genes (internal stop) :: 16 of 63\nPseudo Genes (multiple problems) :: 12 of 63\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF017525.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
CRASP family complement regulator-acquiring lipoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_014696762.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539223.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539728.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890338.1
COORDINATES: similar to AA sequence:RefSeq:WP_002658520.1
chromosome replication/partitioning protein
COORDINATES: protein motif:HMM:NF013114.2
COORDINATES: similar to AA sequence:RefSeq:WP_015633320.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539535.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014683373.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014683290.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633313.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012539666.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633352.1
COORDINATES: protein motif:HMM:NF013599.2
GO:0009279 - cell outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014687021.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539529.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539573.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012539643.1
COORDINATES: similar to AA sequence:RefSeq:WP_012539644.1
COORDINATES: protein motif:HMM:NF014468.2
COORDINATES: similar to AA sequence:RefSeq:WP_015633306.1
COORDINATES: similar to AA sequence:RefSeq:WP_015633307.1
COORDINATES: similar to AA sequence:RefSeq:WP_014486300.1